Wall clock time and date at job start Tue Mar 31 2020 13:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 119.45803 * 2 1 4 4 C 1.38344 * 119.30984 * 179.97438 * 3 2 1 5 5 C 1.40069 * 118.28568 * 359.97438 * 4 3 2 6 6 C 1.47725 * 120.56883 * 180.27436 * 5 4 3 7 7 O 1.21464 * 120.00176 * 174.42323 * 6 5 4 8 8 O 1.34715 * 119.99541 * 354.42913 * 6 5 4 9 9 C 1.45196 * 116.99649 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46854 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00359 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00173 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00307 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00154 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00183 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00074 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47085 * 89.99921 * 18 16 14 20 20 H 1.48497 * 109.47306 * 209.99785 * 18 16 14 21 21 H 1.48496 * 109.46907 * 330.00041 * 18 16 14 22 22 C 1.39580 * 118.87071 * 359.97438 * 5 4 3 23 23 C 1.50703 * 119.71989 * 180.02562 * 22 5 4 24 24 C 1.52996 * 117.49805 * 178.59772 * 23 22 5 25 25 C 1.52998 * 117.49585 * 109.97611 * 23 22 5 26 26 N 1.31680 * 120.55755 * 0.02562 * 22 5 4 27 27 H 1.09001 * 109.47074 * 270.02177 * 1 2 3 28 28 H 1.08998 * 109.46753 * 30.02178 * 1 2 3 29 29 H 1.08998 * 109.47135 * 150.02337 * 1 2 3 30 30 H 1.08003 * 120.34746 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.85613 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.47380 * 299.99681 * 9 8 6 33 33 H 1.08999 * 109.47162 * 60.00161 * 9 8 6 34 34 H 0.97001 * 119.99713 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47087 * 299.99964 * 13 12 10 36 36 H 1.08999 * 109.46843 * 60.00390 * 13 12 10 37 37 H 0.97001 * 120.00433 * 179.97438 * 17 16 14 38 38 H 1.09003 * 115.55018 * 324.30531 * 23 22 5 39 39 H 1.09004 * 117.49857 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.50032 * 145.02305 * 24 23 22 41 41 H 1.09007 * 117.49997 * 214.97650 * 25 23 22 42 42 H 1.09004 * 117.50351 * 359.97318 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5708 1.2011 0.0005 5 6 4.2314 -0.0341 0.0016 6 6 5.7073 -0.0967 0.0083 7 8 6.2692 -1.1686 0.1114 8 8 6.4299 1.0350 -0.0998 9 6 7.8753 0.8980 -0.0854 10 6 8.5101 2.2585 -0.2162 11 8 7.8130 3.2464 -0.3117 12 7 9.8526 2.3777 -0.2261 13 6 10.4697 3.7003 -0.3527 14 6 11.9699 3.5581 -0.3379 15 1 12.4188 2.5804 -0.2432 16 6 12.7694 4.6764 -0.4442 17 7 14.0786 4.5524 -0.4308 18 14 11.9931 6.3677 -0.6059 19 1 11.7867 6.9488 0.7450 20 1 12.8905 7.2512 -1.3929 21 1 10.6849 6.2477 -1.2982 22 6 3.4713 -1.2048 0.0027 23 6 4.1623 -2.5441 0.0044 24 6 3.2804 -3.7939 0.0387 25 6 4.0736 -3.3830 1.2808 26 7 2.1557 -1.1489 0.0021 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6442 2.1382 -0.0004 31 1 4.1271 2.1268 0.0010 32 1 8.1876 0.4398 0.8529 33 1 8.1891 0.2695 -0.9188 34 1 10.4102 1.5876 -0.1494 35 1 10.1578 4.1584 -1.2913 36 1 10.1557 4.3289 0.4805 37 1 14.6412 5.3390 -0.5059 38 1 5.0878 -2.5964 -0.5690 39 1 2.2005 -3.6474 0.0604 40 1 3.6256 -4.6687 -0.5123 41 1 4.9407 -3.9876 1.5470 42 1 3.5159 -2.9661 2.1195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838342662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:52 Heat of formation + Delta-G solvation = -59.188771 kcal Electronic energy + Delta-G solvation = -25321.192894 eV Core-core repulsion = 21460.447550 eV Total energy + Delta-G solvation = -3860.745343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32099 -40.10247 -38.84405 -37.33285 -36.32340 -34.41753 -33.60712 -32.46398 -32.41286 -29.72546 -28.61009 -27.17133 -25.12534 -23.47335 -22.57482 -22.20698 -21.30685 -21.07518 -20.16488 -18.29176 -17.71427 -16.95506 -16.82215 -16.49268 -16.36551 -15.92605 -15.30999 -15.14293 -14.91200 -14.62365 -14.54051 -14.22430 -13.71017 -13.31075 -13.25832 -12.99249 -12.83010 -12.64769 -12.50417 -12.40274 -12.19364 -12.08047 -11.68781 -11.10476 -11.04543 -10.89391 -10.83630 -10.76902 -10.37214 -10.17555 -10.03004 -9.82851 -9.57213 -9.39137 -9.16339 -8.84713 -8.31184 -6.26662 -4.29943 0.16403 0.82016 2.21978 2.26637 2.97759 3.23026 3.24337 3.30012 3.37449 3.59833 3.79336 3.82148 4.16228 4.28366 4.33386 4.43536 4.60599 4.79500 4.86249 4.89593 4.96096 5.07536 5.07862 5.12404 5.12761 5.15627 5.17859 5.26636 5.48113 5.53131 5.62467 5.68038 5.76969 5.93110 6.01970 6.15070 6.28040 6.69363 6.97357 7.04973 7.28440 7.50632 7.53068 8.01130 8.37697 8.64017 8.76146 9.32193 10.85061 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002368 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.694053 B =11819.070733 C =12928.991816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.163 3.837 3 C -0.193 4.193 4 C -0.008 4.008 5 C -0.180 4.180 6 C 0.514 3.486 7 O -0.495 6.495 8 O -0.326 6.326 9 C 0.051 3.949 10 C 0.502 3.498 11 O -0.537 6.537 12 N -0.699 5.699 13 C 0.222 3.778 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.260 1.260 22 C 0.232 3.768 23 C -0.121 4.121 24 C -0.164 4.164 25 C -0.151 4.151 26 N -0.490 5.490 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.268 0.732 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.959 -13.051 1.550 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.026 3.974 3 C -0.213 4.213 4 C -0.033 4.033 5 C -0.183 4.183 6 C 0.358 3.642 7 O -0.384 6.384 8 O -0.241 6.241 9 C -0.027 4.027 10 C 0.286 3.714 11 O -0.415 6.415 12 N -0.349 5.349 13 C 0.101 3.899 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 C 0.094 3.906 23 C -0.139 4.139 24 C -0.201 4.201 25 C -0.189 4.189 26 N -0.199 5.199 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.163 0.837 31 H 0.174 0.826 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.233 0.767 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.541 -13.262 1.494 29.708 hybrid contribution 0.816 1.388 -0.013 1.610 sum -25.725 -11.875 1.481 28.372 Atomic orbital electron populations 1.20815 0.88179 1.04000 1.03559 1.21607 0.97385 0.88145 0.90262 1.21989 0.94489 0.99703 1.05083 1.22072 0.94565 0.98042 0.88652 1.19814 0.90490 0.95310 1.12716 1.20870 0.88024 0.82069 0.73238 1.90795 1.72507 1.29586 1.45559 1.86576 1.19845 1.34481 1.83234 1.22847 0.77135 0.97696 1.04972 1.19911 0.83531 0.89483 0.78523 1.90695 1.62179 1.38948 1.49695 1.46066 1.04524 1.12449 1.71863 1.19556 0.93700 0.79740 0.96930 1.21060 0.87997 0.96204 1.53174 0.90105 1.24791 0.94680 0.99274 0.93838 1.69873 1.03354 1.30557 1.48923 0.86814 0.79963 0.83837 0.79068 1.19792 1.20825 1.18480 1.20499 0.88331 0.93077 0.88735 1.21302 1.01137 0.86792 1.04710 1.22995 0.99186 0.96922 1.00972 1.22874 1.02702 1.01980 0.91315 1.67391 1.08326 1.28992 1.15231 0.89797 0.90141 0.90049 0.83720 0.82572 0.88095 0.88114 0.76660 0.95417 0.95872 0.92163 0.83966 0.87580 0.88541 0.88054 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.16 36.01 0.37 -0.21 16 2 C 0.16 1.44 6.78 -82.50 -0.56 0.88 16 3 C -0.19 -1.62 9.72 -39.50 -0.38 -2.00 16 4 C -0.01 -0.08 9.74 -38.86 -0.38 -0.46 16 5 C -0.18 -2.20 5.89 -104.83 -0.62 -2.81 16 6 C 0.51 7.03 7.87 34.61 0.27 7.30 16 7 O -0.50 -7.07 13.20 -19.24 -0.25 -7.32 16 8 O -0.33 -4.87 9.10 -47.21 -0.43 -5.30 16 9 C 0.05 0.72 5.95 36.01 0.21 0.93 16 10 C 0.50 9.31 7.91 -10.98 -0.09 9.22 16 11 O -0.54 -12.03 16.50 -14.11 -0.23 -12.26 16 12 N -0.70 -13.56 5.55 -61.47 -0.34 -13.90 16 13 C 0.22 5.31 4.50 -5.20 -0.02 5.28 16 14 C -0.55 -14.64 9.83 -34.44 -0.34 -14.98 16 15 H 0.08 2.25 7.84 -52.48 -0.41 1.83 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 18 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 22 C 0.23 2.73 6.50 -82.16 -0.53 2.20 16 23 C -0.12 -1.33 4.62 -91.77 -0.42 -1.75 16 24 C -0.16 -1.46 10.02 -26.73 -0.27 -1.73 16 25 C -0.15 -1.43 10.23 -26.73 -0.27 -1.71 16 26 N -0.49 -5.30 9.19 -5.40 -0.05 -5.35 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.16 1.58 7.71 -52.49 -0.40 1.18 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.67 8.32 -40.82 -0.34 6.33 16 35 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 36 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 1.70 6.11 -51.93 -0.32 1.38 16 39 H 0.11 0.97 7.54 -51.93 -0.39 0.58 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -33.16 364.63 -8.44 -41.60 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.60 Total: 3.72 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.13 Total: 2.23 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.38 Total: -44.51 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.92 Total: -24.88 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.16 -8.44 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838342662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.592 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds