Wall clock time and date at job start Tue Mar 31 2020 13:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 119.45803 * 2 1 4 4 C 1.38344 * 119.30984 * 179.97438 * 3 2 1 5 5 C 1.40069 * 118.28568 * 359.97438 * 4 3 2 6 6 C 1.47725 * 120.56883 * 180.27436 * 5 4 3 7 7 O 1.21464 * 120.00176 * 174.42323 * 6 5 4 8 8 O 1.34715 * 119.99541 * 354.42913 * 6 5 4 9 9 C 1.45196 * 116.99649 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46854 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00359 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00173 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00307 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00154 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00183 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00074 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47085 * 89.99921 * 18 16 14 20 20 H 1.48497 * 109.47306 * 209.99785 * 18 16 14 21 21 H 1.48496 * 109.46907 * 330.00041 * 18 16 14 22 22 C 1.39580 * 118.87071 * 359.97438 * 5 4 3 23 23 C 1.50703 * 119.71989 * 180.02562 * 22 5 4 24 24 C 1.52996 * 117.49805 * 178.59772 * 23 22 5 25 25 C 1.52998 * 117.49585 * 109.97611 * 23 22 5 26 26 N 1.31680 * 120.55755 * 0.02562 * 22 5 4 27 27 H 1.09001 * 109.47074 * 270.02177 * 1 2 3 28 28 H 1.08998 * 109.46753 * 30.02178 * 1 2 3 29 29 H 1.08998 * 109.47135 * 150.02337 * 1 2 3 30 30 H 1.08003 * 120.34746 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.85613 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.47380 * 299.99681 * 9 8 6 33 33 H 1.08999 * 109.47162 * 60.00161 * 9 8 6 34 34 H 0.97001 * 119.99713 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47087 * 299.99964 * 13 12 10 36 36 H 1.08999 * 109.46843 * 60.00390 * 13 12 10 37 37 H 0.97001 * 120.00433 * 179.97438 * 17 16 14 38 38 H 1.09003 * 115.55018 * 324.30531 * 23 22 5 39 39 H 1.09004 * 117.49857 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.50032 * 145.02305 * 24 23 22 41 41 H 1.09007 * 117.49997 * 214.97650 * 25 23 22 42 42 H 1.09004 * 117.50351 * 359.97318 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5708 1.2011 0.0005 5 6 4.2314 -0.0341 0.0016 6 6 5.7073 -0.0967 0.0083 7 8 6.2692 -1.1686 0.1114 8 8 6.4299 1.0350 -0.0998 9 6 7.8753 0.8980 -0.0854 10 6 8.5101 2.2585 -0.2162 11 8 7.8130 3.2464 -0.3117 12 7 9.8526 2.3777 -0.2261 13 6 10.4697 3.7003 -0.3527 14 6 11.9699 3.5581 -0.3379 15 1 12.4188 2.5804 -0.2432 16 6 12.7694 4.6764 -0.4442 17 7 14.0786 4.5524 -0.4308 18 14 11.9931 6.3677 -0.6059 19 1 11.7867 6.9488 0.7450 20 1 12.8905 7.2512 -1.3929 21 1 10.6849 6.2477 -1.2982 22 6 3.4713 -1.2048 0.0027 23 6 4.1623 -2.5441 0.0044 24 6 3.2804 -3.7939 0.0387 25 6 4.0736 -3.3830 1.2808 26 7 2.1557 -1.1489 0.0021 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6442 2.1382 -0.0004 31 1 4.1271 2.1268 0.0010 32 1 8.1876 0.4398 0.8529 33 1 8.1891 0.2695 -0.9188 34 1 10.4102 1.5876 -0.1494 35 1 10.1578 4.1584 -1.2913 36 1 10.1557 4.3289 0.4805 37 1 14.6412 5.3390 -0.5059 38 1 5.0878 -2.5964 -0.5690 39 1 2.2005 -3.6474 0.0604 40 1 3.6256 -4.6687 -0.5123 41 1 4.9407 -3.9876 1.5470 42 1 3.5159 -2.9661 2.1195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838342662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:51 Heat of formation + Delta-G solvation = -79.708797 kcal Electronic energy + Delta-G solvation = -25322.082709 eV Core-core repulsion = 21460.447550 eV Total energy + Delta-G solvation = -3861.635158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21479 -41.14994 -40.28638 -38.14809 -37.37580 -36.21440 -34.48248 -34.34468 -33.11522 -31.19611 -29.52167 -28.61586 -25.98543 -24.37593 -23.95777 -23.25891 -22.30003 -21.88281 -21.70657 -19.53956 -19.04151 -18.40359 -17.91153 -17.45558 -17.35849 -17.18489 -16.80566 -16.33849 -16.08715 -15.82073 -15.47041 -15.22602 -14.95683 -14.64583 -14.50927 -14.27659 -13.85667 -13.81469 -13.54157 -13.38636 -13.09297 -13.06744 -12.95453 -12.71559 -12.38363 -11.97153 -11.93995 -11.85438 -11.67841 -11.61285 -11.20403 -11.01593 -10.95291 -10.93011 -10.58499 -10.05678 -9.89648 -8.40509 -6.48268 -0.64798 0.06612 1.10522 1.31361 1.33455 1.36322 1.47331 1.49982 2.27668 2.42339 2.47704 2.91043 2.94803 3.05458 3.39359 3.55443 3.62962 3.67975 3.86897 4.02076 4.03172 4.04467 4.14909 4.20045 4.26747 4.55206 4.69472 4.73614 4.76297 4.78794 4.89037 4.96526 4.99615 5.04160 5.05840 5.13362 5.22606 5.26259 5.33927 5.38496 5.54467 6.04695 6.47259 6.52269 6.70257 6.76274 7.10223 7.25564 8.73998 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002368 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.694053 B =11819.070733 C =12928.991816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.186 4.186 4 C -0.016 4.016 5 C -0.204 4.204 6 C 0.515 3.485 7 O -0.506 6.506 8 O -0.341 6.341 9 C 0.059 3.941 10 C 0.506 3.494 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.233 3.767 14 C -0.548 4.548 15 H 0.061 0.939 16 C 0.026 3.974 17 N -0.930 5.930 18 Si 0.938 3.062 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.258 1.258 22 C 0.222 3.778 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.149 4.149 26 N -0.502 5.502 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.413 0.587 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.273 0.727 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.442 -13.103 1.662 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.205 4.205 4 C -0.042 4.042 5 C -0.207 4.207 6 C 0.361 3.639 7 O -0.396 6.396 8 O -0.257 6.257 9 C -0.017 4.017 10 C 0.292 3.708 11 O -0.457 6.457 12 N -0.348 5.348 13 C 0.109 3.891 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.182 1.182 22 C 0.084 3.916 23 C -0.158 4.158 24 C -0.185 4.185 25 C -0.186 4.186 26 N -0.212 5.212 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.195 0.805 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.249 0.751 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.027 -13.355 1.610 31.993 hybrid contribution 1.512 1.336 -0.043 2.018 sum -27.516 -12.019 1.567 30.067 Atomic orbital electron populations 1.20941 0.85455 1.05167 1.04707 1.22282 0.99135 0.87717 0.88522 1.22339 0.93647 1.01019 1.03474 1.22183 0.95667 0.97357 0.88950 1.19858 0.89610 0.96362 1.14882 1.21127 0.88545 0.81491 0.72759 1.90783 1.72813 1.29706 1.46279 1.86562 1.20010 1.35445 1.83634 1.22764 0.77062 0.94685 1.07226 1.20524 0.82729 0.90792 0.76798 1.90674 1.62900 1.40833 1.51279 1.45856 1.05343 1.11462 1.72132 1.19173 0.92012 0.81829 0.96057 1.21271 0.89585 0.95474 1.52293 0.92063 1.25610 0.95075 1.03141 0.93654 1.69979 1.04721 1.31846 1.50357 0.85852 0.79146 0.79454 0.79422 1.18956 1.19948 1.18218 1.20621 0.88861 0.93150 0.88933 1.21269 1.01323 0.87494 1.05732 1.23032 0.98852 0.96316 1.00337 1.22913 1.03075 1.01594 0.91059 1.67462 1.07805 1.30121 1.15861 0.88433 0.87798 0.90084 0.80506 0.82732 0.85714 0.85737 0.75061 0.96446 0.96530 0.91819 0.85323 0.87672 0.87049 0.87331 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 71.24 0.72 -0.08 16 2 C 0.16 2.49 6.78 42.57 0.29 2.78 16 3 C -0.19 -2.72 9.72 22.32 0.22 -2.50 16 4 C -0.02 -0.33 9.74 22.74 0.22 -0.11 16 5 C -0.20 -4.93 5.89 -20.00 -0.12 -5.05 16 6 C 0.52 13.99 7.87 70.33 0.55 14.54 16 7 O -0.51 -14.28 13.20 19.95 0.26 -14.02 16 8 O -0.34 -9.99 9.10 -49.87 -0.45 -10.44 16 9 C 0.06 1.60 5.95 71.24 0.42 2.03 16 10 C 0.51 18.37 7.91 87.66 0.69 19.07 16 11 O -0.58 -25.68 16.50 15.76 0.26 -25.42 16 12 N -0.70 -26.63 5.55 -466.79 -2.59 -29.22 16 13 C 0.23 11.05 4.50 85.63 0.38 11.43 16 14 C -0.55 -29.58 9.83 25.60 0.25 -29.33 16 15 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 16 C 0.03 1.43 5.47 84.65 0.46 1.89 16 17 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 18 Si 0.94 43.18 27.47 68.60 1.88 45.06 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 22 C 0.22 5.15 6.50 42.91 0.28 5.43 16 23 C -0.14 -3.03 4.62 -11.54 -0.05 -3.08 16 24 C -0.15 -2.50 10.02 30.59 0.31 -2.19 16 25 C -0.15 -2.72 10.23 30.59 0.31 -2.41 16 26 N -0.50 -10.29 9.19 -171.01 -1.57 -11.86 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.33 8.07 -2.39 -0.02 0.31 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.15 3.08 7.71 -2.91 -0.02 3.06 16 32 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.41 13.48 8.32 -92.71 -0.77 12.71 16 35 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 36 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.13 3.11 6.11 -2.39 -0.01 3.10 16 39 H 0.10 1.80 7.54 -2.38 -0.02 1.78 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.76 364.63 3.27 -68.49 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.23 Total: 19.62 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 4.95 Total: 12.41 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.86 Total: -95.70 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: 0.07 Total: -49.88 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -71.76 3.27 -68.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838342662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.223 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds