Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00363 * 2 1 4 4 H 1.48498 * 109.47410 * 270.00397 * 3 2 1 5 5 H 1.48505 * 109.47109 * 30.00648 * 3 2 1 6 6 H 1.48500 * 109.47500 * 150.00040 * 3 2 1 7 7 C 1.39934 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 197.86529 * 7 2 1 9 9 C 1.41406 * 119.99981 * 17.86405 * 7 2 1 10 10 C 1.40780 * 120.20880 * 204.45341 * 9 7 2 11 11 C 1.37651 * 119.89465 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32353 * 359.72829 * 11 10 9 13 13 C 1.39293 * 120.42122 * 0.55576 * 12 11 10 14 14 N 1.39686 * 119.95028 * 179.72440 * 13 12 11 15 15 C 1.46501 * 119.99639 * 359.71946 * 14 13 12 16 16 H 1.09001 * 110.54252 * 36.39908 * 15 14 13 17 17 C 1.54228 * 110.73577 * 159.33847 * 15 14 13 18 18 C 1.51317 * 103.55761 * 118.58063 * 17 15 14 19 19 O 1.21226 * 125.40141 * 179.97438 * 18 17 15 20 20 N 1.33878 * 109.20243 * 359.75671 * 18 17 15 21 21 C 1.46507 * 122.76159 * 180.24078 * 20 18 17 22 22 C 1.52992 * 109.46987 * 270.21287 * 21 20 18 23 23 C 1.53003 * 109.47007 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.47332 * 179.97438 * 23 22 21 25 25 C 1.33877 * 114.47800 * 0.43568 * 20 18 17 26 26 O 1.21220 * 125.39948 * 179.82896 * 25 20 18 27 27 C 1.38317 * 120.09836 * 359.44054 * 13 12 11 28 28 H 0.96999 * 119.99642 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05502 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.83862 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.78926 * 180.27003 * 12 11 10 32 32 H 0.97000 * 120.00211 * 179.72893 * 14 13 12 33 33 H 1.08995 * 110.60728 * 237.09898 * 17 15 14 34 34 H 1.09002 * 110.60646 * 0.06262 * 17 15 14 35 35 H 1.09001 * 109.46538 * 30.21131 * 21 20 18 36 36 H 1.08998 * 109.46698 * 150.20719 * 21 20 18 37 37 H 1.09001 * 109.47354 * 299.99345 * 22 21 20 38 38 H 1.08998 * 109.47864 * 60.00147 * 22 21 20 39 39 H 1.09002 * 109.47238 * 299.99857 * 23 22 21 40 40 H 1.09001 * 109.47359 * 60.00083 * 23 22 21 41 41 H 0.96695 * 113.99975 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.16209 * 180.25192 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3520 -2.4068 -0.3767 10 6 1.8256 -3.6500 0.0837 11 6 1.1818 -4.8091 -0.2861 12 6 0.0658 -4.7585 -1.1052 13 6 -0.4107 -3.5362 -1.5733 14 7 -1.5334 -3.4971 -2.4035 15 6 -2.2051 -4.7415 -2.7862 16 1 -2.1936 -5.4521 -1.9597 17 6 -3.6517 -4.4632 -3.2427 18 6 -3.6671 -4.9354 -4.6802 19 8 -4.6254 -4.8972 -5.4217 20 7 -2.4534 -5.3978 -5.0048 21 6 -2.1355 -5.9258 -6.3339 22 6 -2.4175 -7.4292 -6.3662 23 6 -2.0849 -7.9808 -7.7541 24 8 -2.3477 -9.3851 -7.7841 25 6 -1.5551 -5.3417 -4.0137 26 8 -0.4023 -5.7088 -4.0893 27 6 0.2227 -2.3607 -1.2125 28 1 -0.4849 0.8401 0.0004 29 1 2.6922 -3.6942 0.7268 30 1 1.5456 -5.7623 0.0680 31 1 -0.4352 -5.6729 -1.3865 32 1 -1.8683 -2.6460 -2.7267 33 1 -4.3599 -5.0353 -2.6433 34 1 -3.8734 -3.3974 -3.1866 35 1 -2.7513 -5.4245 -7.0807 36 1 -1.0826 -5.7487 -6.5529 37 1 -1.8017 -7.9305 -5.6194 38 1 -3.4704 -7.6063 -6.1472 39 1 -2.7003 -7.4796 -8.5013 40 1 -1.0318 -7.8038 -7.9726 41 1 -2.1593 -9.8024 -8.6358 42 1 -0.1484 -1.4121 -1.5715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840744730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = -89.252929 kcal Electronic energy + Delta-G solvation = -26154.757541 eV Core-core repulsion = 22292.708518 eV Total energy + Delta-G solvation = -3862.049023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00260 -38.67672 -37.83048 -37.43455 -35.96214 -35.47491 -33.70488 -32.85525 -30.73501 -29.47598 -27.59643 -26.10851 -25.41774 -24.99319 -22.41055 -22.16039 -20.95268 -20.23009 -19.47805 -17.86807 -17.57454 -17.25400 -16.69724 -16.45640 -15.90926 -15.73016 -15.10306 -14.95973 -14.80790 -14.31810 -14.18564 -13.96447 -13.91894 -13.47923 -13.22403 -12.86187 -12.69208 -12.39076 -12.18268 -12.14997 -11.64939 -11.57049 -11.47327 -11.37940 -11.08863 -10.77047 -10.59447 -10.43362 -10.33131 -10.16749 -9.89111 -9.68426 -9.49926 -9.30397 -8.87372 -7.33540 -6.77617 -6.35442 -4.33341 1.46559 2.35523 2.59776 2.84742 3.08689 3.12429 3.17635 3.30132 3.77432 3.90137 3.95972 4.10989 4.27117 4.33100 4.56607 4.70828 4.73250 4.88928 4.95903 4.98690 5.17291 5.20065 5.37833 5.45081 5.51323 5.67188 5.80190 5.85959 6.22886 6.54769 6.70985 6.79637 7.00319 7.10755 7.23020 7.25749 7.27571 7.34054 7.67322 7.76512 7.88687 8.03622 8.12483 8.41389 8.46215 8.75186 8.97332 9.05185 10.22578 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002908 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.757657 B = 9624.764970 C =10127.621039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.136 3.864 10 C -0.251 4.251 11 C -0.067 4.067 12 C -0.280 4.280 13 C 0.205 3.795 14 N -0.735 5.735 15 C 0.137 3.863 16 H 0.126 0.874 17 C -0.165 4.165 18 C 0.532 3.468 19 O -0.489 6.489 20 N -0.574 5.574 21 C 0.101 3.899 22 C -0.136 4.136 23 C 0.081 3.919 24 O -0.574 6.574 25 C 0.503 3.497 26 O -0.452 6.452 27 C -0.221 4.221 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.397 0.603 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.381 0.619 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 -8.801 -11.589 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.133 3.867 10 C -0.271 4.271 11 C -0.086 4.086 12 C -0.302 4.302 13 C 0.108 3.892 14 N -0.372 5.372 15 C 0.025 3.975 16 H 0.144 0.856 17 C -0.205 4.205 18 C 0.321 3.679 19 O -0.362 6.362 20 N -0.319 5.319 21 C -0.021 4.021 22 C -0.174 4.174 23 C 0.003 3.997 24 O -0.379 6.379 25 C 0.288 3.712 26 O -0.319 6.319 27 C -0.244 4.244 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.228 0.772 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.186 -8.876 -11.377 16.590 hybrid contribution 0.418 0.962 -0.824 1.334 sum -7.767 -7.915 -12.201 16.488 Atomic orbital electron populations 1.69850 1.07475 1.28803 1.35802 1.25868 0.94702 1.01096 0.92279 0.86373 0.80599 0.80857 0.79214 1.19422 1.20440 1.18670 1.19561 0.98133 0.91251 1.40398 0.90511 1.17312 0.90090 0.91921 0.87365 1.20903 1.04678 0.92888 1.08631 1.20289 0.95012 0.96349 0.96905 1.19848 1.04052 0.94109 1.12176 1.17579 0.86353 0.94694 0.90534 1.44197 1.32641 1.04066 1.56250 1.21283 0.89699 0.91391 0.95143 0.85641 1.22832 0.98223 1.06294 0.93116 1.20785 0.81402 0.75296 0.90386 1.90756 1.35614 1.52886 1.56921 1.46933 1.13761 1.56924 1.14253 1.21569 1.03366 0.93846 0.83296 1.21806 1.03513 0.94450 0.97678 1.22004 0.99342 0.81622 0.96747 1.86475 1.90487 1.21730 1.39227 1.22209 0.85815 0.77043 0.86147 1.90783 1.15402 1.43321 1.82361 1.20710 1.02203 0.94881 1.06601 0.91178 0.89262 0.89474 0.89597 0.76733 0.85377 0.85548 0.88873 0.88677 0.90393 0.90571 0.93270 0.93134 0.77198 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.96 55.55 0.61 -19.40 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.90 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.28 9.05 -37.74 -0.34 -12.62 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.14 3.62 5.57 -106.85 -0.60 3.03 16 10 C -0.25 -6.23 9.79 -38.84 -0.38 -6.61 16 11 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 12 C -0.28 -6.15 8.96 -39.08 -0.35 -6.50 16 13 C 0.20 4.50 6.64 -83.86 -0.56 3.94 16 14 N -0.74 -12.42 5.33 -52.42 -0.28 -12.70 16 15 C 0.14 1.83 3.02 -68.14 -0.21 1.62 16 16 H 0.13 1.64 6.61 -51.93 -0.34 1.30 16 17 C -0.16 -1.61 6.79 -26.94 -0.18 -1.79 16 18 C 0.53 6.29 8.08 -11.08 -0.09 6.20 16 19 O -0.49 -6.86 17.48 5.60 0.10 -6.76 16 20 N -0.57 -7.06 2.55 -115.34 -0.29 -7.36 16 21 C 0.10 1.07 5.55 -4.04 -0.02 1.05 16 22 C -0.14 -1.40 5.91 -26.73 -0.16 -1.56 16 23 C 0.08 0.68 7.05 37.16 0.26 0.94 16 24 O -0.57 -5.27 13.66 -35.23 -0.48 -5.75 16 25 C 0.50 7.41 7.72 -11.08 -0.09 7.32 16 26 O -0.45 -8.35 17.14 5.61 0.10 -8.25 16 27 C -0.22 -5.53 8.53 -38.67 -0.33 -5.86 16 28 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 29 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.09 1.72 6.19 -52.49 -0.32 1.39 16 32 H 0.40 6.15 8.33 -40.82 -0.34 5.81 16 33 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.13 1.11 7.67 -51.93 -0.40 0.71 16 35 H 0.09 0.88 7.83 -51.93 -0.41 0.48 16 36 H 0.09 1.01 7.83 -51.93 -0.41 0.60 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 1.61 9.12 45.56 0.42 2.03 16 42 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -32.46 358.60 -8.04 -40.50 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -4.64 Total: 11.68 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.52 Total: -10.93 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.03 Total: -39.45 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.29 Total: -20.77 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.46 -8.04 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840744730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.750 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds