Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00363 * 2 1 4 4 H 1.48498 * 109.47410 * 270.00397 * 3 2 1 5 5 H 1.48505 * 109.47109 * 30.00648 * 3 2 1 6 6 H 1.48500 * 109.47500 * 150.00040 * 3 2 1 7 7 C 1.39934 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 197.86529 * 7 2 1 9 9 C 1.41406 * 119.99981 * 17.86405 * 7 2 1 10 10 C 1.40780 * 120.20880 * 204.45341 * 9 7 2 11 11 C 1.37651 * 119.89465 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32353 * 359.72829 * 11 10 9 13 13 C 1.39293 * 120.42122 * 0.55576 * 12 11 10 14 14 N 1.39686 * 119.95028 * 179.72440 * 13 12 11 15 15 C 1.46501 * 119.99639 * 359.71946 * 14 13 12 16 16 H 1.09001 * 110.54252 * 36.39908 * 15 14 13 17 17 C 1.54228 * 110.73577 * 159.33847 * 15 14 13 18 18 C 1.51317 * 103.55761 * 118.58063 * 17 15 14 19 19 O 1.21226 * 125.40141 * 179.97438 * 18 17 15 20 20 N 1.33878 * 109.20243 * 359.75671 * 18 17 15 21 21 C 1.46507 * 122.76159 * 180.24078 * 20 18 17 22 22 C 1.52992 * 109.46987 * 270.21287 * 21 20 18 23 23 C 1.53003 * 109.47007 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.47332 * 179.97438 * 23 22 21 25 25 C 1.33877 * 114.47800 * 0.43568 * 20 18 17 26 26 O 1.21220 * 125.39948 * 179.82896 * 25 20 18 27 27 C 1.38317 * 120.09836 * 359.44054 * 13 12 11 28 28 H 0.96999 * 119.99642 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05502 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.83862 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.78926 * 180.27003 * 12 11 10 32 32 H 0.97000 * 120.00211 * 179.72893 * 14 13 12 33 33 H 1.08995 * 110.60728 * 237.09898 * 17 15 14 34 34 H 1.09002 * 110.60646 * 0.06262 * 17 15 14 35 35 H 1.09001 * 109.46538 * 30.21131 * 21 20 18 36 36 H 1.08998 * 109.46698 * 150.20719 * 21 20 18 37 37 H 1.09001 * 109.47354 * 299.99345 * 22 21 20 38 38 H 1.08998 * 109.47864 * 60.00147 * 22 21 20 39 39 H 1.09002 * 109.47238 * 299.99857 * 23 22 21 40 40 H 1.09001 * 109.47359 * 60.00083 * 23 22 21 41 41 H 0.96695 * 113.99975 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.16209 * 180.25192 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3520 -2.4068 -0.3767 10 6 1.8256 -3.6500 0.0837 11 6 1.1818 -4.8091 -0.2861 12 6 0.0658 -4.7585 -1.1052 13 6 -0.4107 -3.5362 -1.5733 14 7 -1.5334 -3.4971 -2.4035 15 6 -2.2051 -4.7415 -2.7862 16 1 -2.1936 -5.4521 -1.9597 17 6 -3.6517 -4.4632 -3.2427 18 6 -3.6671 -4.9354 -4.6802 19 8 -4.6254 -4.8972 -5.4217 20 7 -2.4534 -5.3978 -5.0048 21 6 -2.1355 -5.9258 -6.3339 22 6 -2.4175 -7.4292 -6.3662 23 6 -2.0849 -7.9808 -7.7541 24 8 -2.3477 -9.3851 -7.7841 25 6 -1.5551 -5.3417 -4.0137 26 8 -0.4023 -5.7088 -4.0893 27 6 0.2227 -2.3607 -1.2125 28 1 -0.4849 0.8401 0.0004 29 1 2.6922 -3.6942 0.7268 30 1 1.5456 -5.7623 0.0680 31 1 -0.4352 -5.6729 -1.3865 32 1 -1.8683 -2.6460 -2.7267 33 1 -4.3599 -5.0353 -2.6433 34 1 -3.8734 -3.3974 -3.1866 35 1 -2.7513 -5.4245 -7.0807 36 1 -1.0826 -5.7487 -6.5529 37 1 -1.8017 -7.9305 -5.6194 38 1 -3.4704 -7.6063 -6.1472 39 1 -2.7003 -7.4796 -8.5013 40 1 -1.0318 -7.8038 -7.9726 41 1 -2.1593 -9.8024 -8.6358 42 1 -0.1484 -1.4121 -1.5715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840744730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = -112.477178 kcal Electronic energy + Delta-G solvation = -26155.764620 eV Core-core repulsion = 22292.708518 eV Total energy + Delta-G solvation = -3863.056102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.06645 -39.91593 -39.39629 -38.19153 -37.20368 -36.69546 -35.34115 -34.12425 -31.83835 -31.33551 -29.09467 -27.23377 -26.92034 -26.26632 -23.60731 -22.98899 -22.66361 -21.82830 -20.59184 -19.21164 -18.74253 -18.29934 -17.83655 -17.64471 -17.40136 -16.58791 -16.47165 -16.46199 -16.12543 -15.86639 -15.30888 -15.02253 -14.85764 -14.63094 -14.51657 -14.25545 -14.05496 -13.74576 -13.65421 -13.41483 -13.08729 -12.93239 -12.76395 -12.47503 -12.32604 -12.31628 -12.11295 -11.87720 -11.56959 -11.32375 -11.30354 -11.01528 -10.96521 -10.93946 -10.50832 -9.22601 -8.61437 -8.03289 -6.29103 0.38302 1.09120 1.25816 1.40627 1.44310 1.52331 1.54867 1.60771 2.24682 2.59055 2.81242 3.09433 3.19376 3.25980 3.30464 3.74524 3.89108 3.94830 4.05511 4.19455 4.26195 4.36807 4.47093 4.51371 4.52224 4.54425 4.71404 4.81164 4.88930 4.98312 5.01964 5.22068 5.27751 5.42158 5.55844 5.70214 5.92004 6.07748 6.18880 6.21744 6.23160 6.56338 6.67677 6.84819 6.89875 6.92047 7.06139 7.19880 8.39795 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002908 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.757657 B = 9624.764970 C =10127.621039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.040 3.960 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.069 0.931 9 C 0.105 3.895 10 C -0.280 4.280 11 C -0.068 4.068 12 C -0.281 4.281 13 C 0.217 3.783 14 N -0.728 5.728 15 C 0.132 3.868 16 H 0.135 0.865 17 C -0.147 4.147 18 C 0.537 3.463 19 O -0.507 6.507 20 N -0.572 5.572 21 C 0.097 3.903 22 C -0.130 4.130 23 C 0.082 3.918 24 O -0.596 6.596 25 C 0.506 3.494 26 O -0.495 6.495 27 C -0.247 4.247 28 H 0.286 0.714 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.404 0.596 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.401 0.599 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 -8.882 -12.519 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.175 4.175 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.300 4.300 11 C -0.086 4.086 12 C -0.304 4.304 13 C 0.118 3.882 14 N -0.363 5.363 15 C 0.022 3.978 16 H 0.153 0.847 17 C -0.186 4.186 18 C 0.327 3.673 19 O -0.380 6.380 20 N -0.316 5.316 21 C -0.024 4.024 22 C -0.169 4.169 23 C 0.004 3.996 24 O -0.406 6.406 25 C 0.292 3.708 26 O -0.365 6.365 27 C -0.271 4.271 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.241 0.759 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.252 0.748 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.833 -8.981 -12.351 18.163 hybrid contribution 0.814 0.838 -0.623 1.324 sum -9.019 -8.144 -12.974 17.776 Atomic orbital electron populations 1.69884 1.08605 1.30138 1.35713 1.26625 0.95547 1.03970 0.91389 0.85295 0.79136 0.76468 0.79324 1.18941 1.19090 1.18691 1.19770 0.98170 0.92723 1.42658 0.91323 1.17701 0.91158 0.92707 0.88182 1.21040 1.05611 0.93415 1.09973 1.20634 0.94851 0.96816 0.96341 1.20156 1.03781 0.94993 1.11439 1.17592 0.86971 0.93714 0.89948 1.44167 1.31246 1.05953 1.54959 1.21525 0.91347 0.89939 0.95001 0.84732 1.22876 0.96080 1.07939 0.91726 1.21056 0.80684 0.74559 0.90958 1.90763 1.36029 1.53636 1.57612 1.46938 1.13658 1.56512 1.14463 1.21711 1.03631 0.94204 0.82814 1.21722 1.02437 0.94082 0.98611 1.22011 1.00315 0.81522 0.95758 1.86414 1.90708 1.22189 1.41251 1.22310 0.85322 0.76246 0.86897 1.90769 1.17217 1.45352 1.83147 1.20655 1.03002 0.95526 1.07892 0.90328 0.89357 0.86779 0.87245 0.75912 0.81833 0.83827 0.87392 0.88863 0.92425 0.91390 0.91378 0.92209 0.74837 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.80 10.96 21.82 0.24 -41.56 16 2 C 0.04 2.01 5.14 85.25 0.44 2.45 16 3 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.50 -27.73 9.05 23.46 0.21 -27.52 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.69 16 9 C 0.11 5.81 5.57 -21.31 -0.12 5.69 16 10 C -0.28 -14.32 9.79 22.75 0.22 -14.10 16 11 C -0.07 -3.07 10.02 22.20 0.22 -2.85 16 12 C -0.28 -12.10 8.96 22.59 0.20 -11.90 16 13 C 0.22 9.44 6.64 38.16 0.25 9.69 16 14 N -0.73 -23.48 5.33 -319.76 -1.70 -25.18 16 15 C 0.13 3.22 3.02 44.86 0.14 3.36 16 16 H 0.14 3.12 6.61 -2.39 -0.02 3.10 16 17 C -0.15 -2.34 6.79 30.46 0.21 -2.13 16 18 C 0.54 11.27 8.08 87.99 0.71 11.98 16 19 O -0.51 -12.90 17.48 -2.86 -0.05 -12.95 16 20 N -0.57 -13.10 2.55 -756.66 -1.93 -15.03 16 21 C 0.10 1.94 5.55 86.38 0.48 2.42 16 22 C -0.13 -2.56 5.91 30.59 0.18 -2.38 16 23 C 0.08 1.24 7.05 71.98 0.51 1.74 16 24 O -0.60 -10.10 13.66 -148.98 -2.04 -12.13 16 25 C 0.51 14.19 7.72 87.99 0.68 14.87 16 26 O -0.50 -18.03 17.14 -2.84 -0.05 -18.08 16 27 C -0.25 -12.68 8.53 22.86 0.20 -12.48 16 28 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 29 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.11 4.15 6.19 -2.91 -0.02 4.13 16 32 H 0.40 11.92 8.33 -92.71 -0.77 11.15 16 33 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.14 1.94 7.67 -2.39 -0.02 1.92 16 35 H 0.11 1.84 7.83 -2.39 -0.02 1.82 16 36 H 0.09 1.90 7.83 -2.39 -0.02 1.89 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.40 2.72 9.12 -74.06 -0.68 2.04 16 42 H 0.11 5.56 6.16 -2.91 -0.02 5.55 16 Total: -1.00 -72.17 358.60 0.66 -71.51 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.37 Total: 34.09 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 4.53 Total: -21.17 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.40 Total: -81.78 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.13 Total: -43.16 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -72.17 0.66 -71.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840744730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.964 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds