Wall clock time and date at job start Tue Mar 31 2020 13:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 C 1.52996 * 110.53478 * 187.12938 * 3 2 1 5 5 O 1.42897 * 109.47154 * 177.86807 * 4 3 2 6 6 C 1.42901 * 114.00332 * 179.97438 * 5 4 3 7 7 N 1.47314 * 110.59506 * 310.12718 * 3 2 1 8 8 C 1.34530 * 106.61735 * 118.30717 * 7 3 2 9 9 O 1.21521 * 123.77229 * 180.21068 * 8 7 3 10 10 N 1.33796 * 112.45246 * 0.37754 * 8 7 3 11 11 C 1.39609 * 124.17203 * 179.86706 * 10 8 7 12 12 C 1.39403 * 119.82285 * 185.81417 * 11 10 8 13 13 C 1.36405 * 120.17379 * 179.97438 * 12 11 10 14 14 C 1.40855 * 119.81880 * 0.02562 * 13 12 11 15 15 C 1.41182 * 120.16576 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00265 * 24.54036 * 15 14 13 17 17 C 1.39916 * 119.99570 * 204.81031 * 15 14 13 18 18 N 1.30861 * 120.00159 * 14.98096 * 17 15 14 19 19 Si 1.86801 * 119.99872 * 194.97802 * 17 15 14 20 20 H 1.48499 * 109.47256 * 89.99976 * 19 17 15 21 21 H 1.48502 * 109.47191 * 210.00533 * 19 17 15 22 22 H 1.48506 * 109.46889 * 330.00218 * 19 17 15 23 23 C 1.40841 * 119.65987 * 0.25453 * 14 13 12 24 24 C 1.36408 * 119.82372 * 359.48545 * 23 14 13 25 25 C 1.34763 * 111.64915 * 359.59935 * 10 8 7 26 26 O 1.21231 * 127.15622 * 180.19284 * 25 10 8 27 27 H 1.09000 * 109.47092 * 299.99837 * 1 2 3 28 28 H 1.09003 * 109.47581 * 59.99867 * 1 2 3 29 29 H 1.08996 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47002 * 240.00159 * 2 1 3 31 31 H 1.09003 * 109.47581 * 120.00133 * 2 1 3 32 32 H 1.08998 * 109.47233 * 297.87151 * 4 3 2 33 33 H 1.09006 * 109.47041 * 57.87310 * 4 3 2 34 34 H 1.09002 * 109.47223 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47143 * 300.00686 * 6 5 4 36 36 H 1.08998 * 109.46820 * 60.00348 * 6 5 4 37 37 H 0.96997 * 126.69430 * 298.55647 * 7 3 2 38 38 H 1.08005 * 119.91151 * 359.96362 * 12 11 10 39 39 H 1.07997 * 120.09145 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.08747 * 179.71852 * 23 14 13 42 42 H 1.07994 * 119.91497 * 180.27402 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5592 1.4745 -0.1778 5 8 4.0049 2.8314 -0.2243 6 6 5.4173 2.9741 -0.3885 7 7 1.3748 2.2274 -1.0544 8 6 0.7044 3.2149 -0.4339 9 8 0.0390 4.0490 -1.0156 10 7 0.8550 3.1783 0.8951 11 6 0.2689 4.0889 1.7761 12 6 0.5830 4.0407 3.1334 13 6 0.0149 4.9273 4.0005 14 6 -0.8917 5.8929 3.5211 15 6 -1.4844 6.8138 4.4121 16 1 -0.9912 7.0607 5.3407 17 6 -2.7135 7.4022 4.0947 18 7 -3.4526 6.8990 3.1392 19 14 -3.2994 8.9062 5.0350 20 1 -2.8172 10.1346 4.3540 21 1 -4.7838 8.9150 5.0794 22 1 -2.7631 8.8646 6.4192 23 6 -1.2083 5.9312 2.1492 24 6 -0.6278 5.0412 1.2939 25 6 1.6377 2.1504 1.2785 26 8 1.9546 1.8540 2.4105 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 4.0340 0.9646 0.6604 33 1 3.8269 0.9722 -1.1075 34 1 5.6750 4.0329 -0.4138 35 1 5.9302 2.4954 0.4456 36 1 5.7238 2.5028 -1.3223 37 1 1.4101 2.0620 -2.0095 38 1 1.2778 3.2993 3.4995 39 1 0.2595 4.8891 5.0517 40 1 -4.3049 7.3068 2.9195 41 1 -1.9060 6.6657 1.7749 42 1 -0.8661 5.0720 0.2411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840898817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:01 Heat of formation + Delta-G solvation = -53.952777 kcal Electronic energy + Delta-G solvation = -27477.469895 eV Core-core repulsion = 23616.951601 eV Total energy + Delta-G solvation = -3860.518294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.49214 -38.53318 -38.14153 -37.40671 -36.14613 -34.94310 -33.40027 -32.16606 -29.69303 -29.45918 -29.16212 -26.63528 -25.66035 -24.12779 -23.29904 -22.40422 -21.29722 -19.99449 -19.86051 -17.75421 -17.23150 -16.93448 -16.54089 -16.19298 -16.16837 -15.62344 -15.27678 -15.18661 -14.89605 -14.24190 -14.02944 -13.89940 -13.44264 -13.20410 -13.07982 -12.74949 -12.53940 -12.15901 -12.02303 -11.82317 -11.80749 -11.58018 -11.52513 -11.35406 -11.18995 -11.06314 -10.74843 -10.32988 -10.12956 -9.97351 -9.82129 -9.40372 -9.35169 -9.09126 -8.85019 -7.51378 -7.08470 -6.74123 -4.32483 1.90886 2.62483 2.64637 3.07296 3.09564 3.11807 3.15224 3.23639 3.40995 3.72327 3.93158 4.04866 4.47560 4.55871 4.66791 4.90041 4.97430 5.05222 5.11576 5.16524 5.20895 5.41506 5.50560 5.57570 5.67632 5.73326 5.82216 6.07841 6.19672 6.45711 6.49432 6.82851 6.85245 7.00224 7.06815 7.16589 7.25773 7.57519 7.65331 7.73698 7.94890 8.06334 8.16510 8.28557 8.60466 8.64105 8.88104 8.98087 10.17304 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003562 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.618618 B = 7859.057187 C = 8090.735776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C 0.122 3.878 4 C 0.067 3.933 5 O -0.381 6.381 6 C 0.034 3.966 7 N -0.719 5.719 8 C 0.706 3.294 9 O -0.534 6.534 10 N -0.480 5.480 11 C -0.026 4.026 12 C -0.095 4.095 13 C -0.216 4.216 14 C 0.108 3.892 15 C -0.453 4.453 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.788 5.788 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.156 4.156 24 C -0.104 4.104 25 C 0.529 3.471 26 O -0.469 6.469 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.434 0.566 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.282 0.718 41 H 0.127 0.873 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 -12.413 -8.881 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C 0.030 3.970 4 C -0.011 4.011 5 O -0.300 6.300 6 C -0.062 4.062 7 N -0.383 5.383 8 C 0.408 3.592 9 O -0.408 6.408 10 N -0.215 5.215 11 C -0.115 4.115 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.105 3.895 15 C -0.482 4.482 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.413 5.413 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.176 4.176 24 C -0.124 4.124 25 C 0.316 3.684 26 O -0.341 6.341 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.278 0.722 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.795 -11.862 -8.596 18.197 hybrid contribution -0.033 0.342 -0.101 0.358 sum 10.763 -11.520 -8.697 18.005 Atomic orbital electron populations 1.21800 0.94016 1.02613 1.03092 1.21677 0.97711 0.91426 1.04305 1.21567 0.93282 0.94528 0.87596 1.22646 0.91265 0.85218 1.01935 1.88001 1.23078 1.24422 1.94451 1.22763 0.80881 1.03007 0.99588 1.45420 1.53256 1.30927 1.08739 1.15772 0.80135 0.81926 0.81405 1.90864 1.43007 1.38830 1.68075 1.43141 1.44114 1.27086 1.07121 1.17274 1.07036 0.98724 0.88500 1.20566 1.00103 0.99861 0.90915 1.20600 1.06198 0.99330 0.97523 1.17784 0.89516 0.89806 0.92405 1.19633 1.03180 1.20528 1.04825 0.90227 1.25971 0.96288 0.97432 0.94852 1.69835 1.10170 1.35739 1.25587 0.86248 0.78002 0.81429 0.80664 1.19214 1.20265 1.18577 1.21082 1.02925 1.00913 0.92693 1.21029 0.95618 0.94904 1.00820 1.20271 0.78158 0.80306 0.89666 1.90656 1.54981 1.67397 1.21032 0.92329 0.91813 0.91447 0.89775 0.89149 0.90815 0.91391 0.89311 0.93807 0.93997 0.72249 0.86238 0.88314 0.90720 0.85503 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.35 37.15 0.35 -1.35 16 2 C -0.11 -1.03 5.33 -26.73 -0.14 -1.17 16 3 C 0.12 1.51 0.93 -132.09 -0.12 1.39 16 4 C 0.07 0.69 5.21 37.16 0.19 0.88 16 5 O -0.38 -5.01 10.16 -35.23 -0.36 -5.37 16 6 C 0.03 0.31 11.01 101.05 1.11 1.42 16 7 N -0.72 -9.46 4.64 -52.94 -0.25 -9.70 16 8 C 0.71 13.41 8.40 -88.01 -0.74 12.67 16 9 O -0.53 -11.78 14.61 5.35 0.08 -11.70 16 10 N -0.48 -9.96 2.81 -64.21 -0.18 -10.14 16 11 C -0.03 -0.64 6.57 -83.45 -0.55 -1.19 16 12 C -0.09 -2.35 9.24 -39.81 -0.37 -2.72 16 13 C -0.22 -5.58 9.74 -39.25 -0.38 -5.97 16 14 C 0.11 2.97 5.59 -106.81 -0.60 2.37 16 15 C -0.45 -12.16 9.05 -37.84 -0.34 -12.50 16 16 H 0.08 2.04 7.89 -52.49 -0.41 1.63 16 17 C 0.07 1.84 5.20 -17.34 -0.09 1.75 16 18 N -0.79 -20.65 10.78 55.55 0.60 -20.05 16 19 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.16 -4.29 8.64 -39.26 -0.34 -4.62 16 24 C -0.10 -2.72 9.18 -39.81 -0.37 -3.08 16 25 C 0.53 9.49 5.54 -10.56 -0.06 9.43 16 26 O -0.47 -9.26 15.02 5.60 0.08 -9.17 16 27 H 0.06 0.82 7.42 -51.93 -0.39 0.43 16 28 H 0.06 0.70 7.42 -51.93 -0.39 0.31 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.43 4.26 8.96 -40.82 -0.37 3.89 16 38 H 0.12 2.84 5.32 -52.48 -0.28 2.56 16 39 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 41 H 0.13 3.56 6.04 -52.48 -0.32 3.24 16 42 H 0.13 3.37 5.13 -52.49 -0.27 3.10 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -32.80 347.60 -7.61 -40.41 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.36 Total: 9.39 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.44 Total: -2.69 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.17 Total: -39.89 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.20 Total: -26.24 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.80 -7.61 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840898817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.542 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds