Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 C 1.52996 * 110.53478 * 187.12938 * 3 2 1 5 5 O 1.42897 * 109.47154 * 177.86807 * 4 3 2 6 6 C 1.42901 * 114.00332 * 179.97438 * 5 4 3 7 7 N 1.47314 * 110.59506 * 310.12718 * 3 2 1 8 8 C 1.34530 * 106.61735 * 118.30717 * 7 3 2 9 9 O 1.21521 * 123.77229 * 180.21068 * 8 7 3 10 10 N 1.33796 * 112.45246 * 0.37754 * 8 7 3 11 11 C 1.39609 * 124.17203 * 179.86706 * 10 8 7 12 12 C 1.39403 * 119.82285 * 185.81417 * 11 10 8 13 13 C 1.36405 * 120.17379 * 179.97438 * 12 11 10 14 14 C 1.40855 * 119.81880 * 0.02562 * 13 12 11 15 15 C 1.41182 * 120.16576 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00265 * 24.54036 * 15 14 13 17 17 C 1.39916 * 119.99570 * 204.81031 * 15 14 13 18 18 N 1.30861 * 120.00159 * 14.98096 * 17 15 14 19 19 Si 1.86801 * 119.99872 * 194.97802 * 17 15 14 20 20 H 1.48499 * 109.47256 * 89.99976 * 19 17 15 21 21 H 1.48502 * 109.47191 * 210.00533 * 19 17 15 22 22 H 1.48506 * 109.46889 * 330.00218 * 19 17 15 23 23 C 1.40841 * 119.65987 * 0.25453 * 14 13 12 24 24 C 1.36408 * 119.82372 * 359.48545 * 23 14 13 25 25 C 1.34763 * 111.64915 * 359.59935 * 10 8 7 26 26 O 1.21231 * 127.15622 * 180.19284 * 25 10 8 27 27 H 1.09000 * 109.47092 * 299.99837 * 1 2 3 28 28 H 1.09003 * 109.47581 * 59.99867 * 1 2 3 29 29 H 1.08996 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47002 * 240.00159 * 2 1 3 31 31 H 1.09003 * 109.47581 * 120.00133 * 2 1 3 32 32 H 1.08998 * 109.47233 * 297.87151 * 4 3 2 33 33 H 1.09006 * 109.47041 * 57.87310 * 4 3 2 34 34 H 1.09002 * 109.47223 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47143 * 300.00686 * 6 5 4 36 36 H 1.08998 * 109.46820 * 60.00348 * 6 5 4 37 37 H 0.96997 * 126.69430 * 298.55647 * 7 3 2 38 38 H 1.08005 * 119.91151 * 359.96362 * 12 11 10 39 39 H 1.07997 * 120.09145 * 180.02562 * 13 12 11 40 40 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.08747 * 179.71852 * 23 14 13 42 42 H 1.07994 * 119.91497 * 180.27402 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5592 1.4745 -0.1778 5 8 4.0049 2.8314 -0.2243 6 6 5.4173 2.9741 -0.3885 7 7 1.3748 2.2274 -1.0544 8 6 0.7044 3.2149 -0.4339 9 8 0.0390 4.0490 -1.0156 10 7 0.8550 3.1783 0.8951 11 6 0.2689 4.0889 1.7761 12 6 0.5830 4.0407 3.1334 13 6 0.0149 4.9273 4.0005 14 6 -0.8917 5.8929 3.5211 15 6 -1.4844 6.8138 4.4121 16 1 -0.9912 7.0607 5.3407 17 6 -2.7135 7.4022 4.0947 18 7 -3.4526 6.8990 3.1392 19 14 -3.2994 8.9062 5.0350 20 1 -2.8172 10.1346 4.3540 21 1 -4.7838 8.9150 5.0794 22 1 -2.7631 8.8646 6.4192 23 6 -1.2083 5.9312 2.1492 24 6 -0.6278 5.0412 1.2939 25 6 1.6377 2.1504 1.2785 26 8 1.9546 1.8540 2.4105 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 4.0340 0.9646 0.6604 33 1 3.8269 0.9722 -1.1075 34 1 5.6750 4.0329 -0.4138 35 1 5.9302 2.4954 0.4456 36 1 5.7238 2.5028 -1.3223 37 1 1.4101 2.0620 -2.0095 38 1 1.2778 3.2993 3.4995 39 1 0.2595 4.8891 5.0517 40 1 -4.3049 7.3068 2.9195 41 1 -1.9060 6.6657 1.7749 42 1 -0.8661 5.0720 0.2411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840898817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = -76.305478 kcal Electronic energy + Delta-G solvation = -27478.439181 eV Core-core repulsion = 23616.951601 eV Total energy + Delta-G solvation = -3861.487579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.89016 -39.91669 -39.71622 -38.77029 -37.47288 -36.57168 -35.16462 -33.35176 -31.52508 -31.09483 -30.52112 -27.62006 -27.26863 -25.42986 -24.39618 -24.00819 -22.96409 -21.73377 -21.26220 -19.45356 -18.99392 -18.15649 -17.80048 -17.50863 -17.23352 -17.13353 -16.80489 -16.29707 -16.10860 -15.89882 -15.35183 -15.08650 -14.99729 -14.76788 -14.45400 -14.15899 -14.01773 -13.78460 -13.56689 -13.31616 -13.01064 -12.82936 -12.78659 -12.59715 -12.56826 -12.32763 -12.15477 -11.92889 -11.87776 -11.64392 -11.16920 -10.98751 -10.71584 -10.64783 -10.52073 -9.58714 -9.07155 -8.66681 -6.36925 0.46934 0.76686 1.04905 1.26304 1.38307 1.46864 1.53166 2.10014 2.13085 2.19756 2.53755 2.72429 2.82760 3.60000 3.66046 3.69168 4.09176 4.21733 4.26817 4.32971 4.39876 4.41473 4.49704 4.50708 4.53474 4.59332 4.69497 4.86277 4.93906 4.96884 5.01328 5.07427 5.21664 5.24693 5.26627 5.60176 5.69312 5.81039 5.89283 6.01534 6.11618 6.23760 6.33430 6.45138 6.59895 6.84853 6.90189 7.17432 8.27912 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003562 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.618618 B = 7859.057187 C = 8090.735776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.105 4.105 3 C 0.133 3.867 4 C 0.065 3.935 5 O -0.424 6.424 6 C 0.030 3.970 7 N -0.687 5.687 8 C 0.699 3.301 9 O -0.575 6.575 10 N -0.499 5.499 11 C -0.021 4.021 12 C -0.099 4.099 13 C -0.227 4.227 14 C 0.080 3.920 15 C -0.485 4.485 16 H 0.084 0.916 17 C 0.031 3.969 18 N -0.821 5.821 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.255 1.255 23 C -0.175 4.175 24 C -0.114 4.114 25 C 0.518 3.482 26 O -0.493 6.493 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.453 0.547 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.291 0.709 41 H 0.113 0.887 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 -14.368 -9.918 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.143 4.143 3 C 0.043 3.957 4 C -0.012 4.012 5 O -0.344 6.344 6 C -0.066 4.066 7 N -0.353 5.353 8 C 0.400 3.600 9 O -0.452 6.452 10 N -0.234 5.234 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.247 4.247 14 C 0.077 3.923 15 C -0.514 4.514 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.446 5.446 19 Si 0.811 3.189 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.178 1.178 23 C -0.195 4.195 24 C -0.134 4.134 25 C 0.308 3.692 26 O -0.365 6.365 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.301 0.699 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.450 -13.895 -9.677 21.017 hybrid contribution -0.457 0.808 0.164 0.943 sum 11.993 -13.086 -9.513 20.139 Atomic orbital electron populations 1.21839 0.95649 1.03575 1.00757 1.21821 0.96113 0.88982 1.07404 1.21874 0.95247 0.95246 0.83356 1.22902 0.88622 0.84689 1.05011 1.87947 1.25241 1.26269 1.94906 1.22907 0.79155 1.03124 1.01382 1.45235 1.51316 1.28888 1.09812 1.15954 0.80390 0.82680 0.80942 1.90822 1.45009 1.40812 1.68542 1.43313 1.44950 1.27527 1.07626 1.17339 1.05943 0.98658 0.89277 1.20721 1.00218 0.99862 0.91081 1.20812 1.06165 0.99282 0.98397 1.18090 0.90581 0.90903 0.92693 1.19913 1.04368 1.21787 1.05289 0.89793 1.26919 0.95717 1.00116 0.95683 1.69894 1.10782 1.37114 1.26812 0.85066 0.77827 0.76779 0.79195 1.18636 1.19065 1.17821 1.21029 1.03678 1.01558 0.93247 1.21088 0.96264 0.95451 1.00583 1.21379 0.76728 0.79576 0.91509 1.90618 1.55436 1.67791 1.22678 0.96574 0.92236 0.88910 0.84534 0.88065 0.89554 0.86442 0.90077 0.92945 0.91217 0.69882 0.85178 0.87101 0.89837 0.86957 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.35 71.98 0.67 -2.43 16 2 C -0.11 -1.46 5.33 30.59 0.16 -1.30 16 3 C 0.13 2.91 0.93 2.98 0.00 2.91 16 4 C 0.06 1.05 5.21 71.98 0.38 1.42 16 5 O -0.42 -10.08 10.16 -148.98 -1.51 -11.59 16 6 C 0.03 0.47 11.01 113.37 1.25 1.72 16 7 N -0.69 -16.56 4.64 -439.83 -2.04 -18.60 16 8 C 0.70 26.68 8.40 179.44 1.51 28.19 16 9 O -0.57 -26.14 14.61 -3.78 -0.06 -26.20 16 10 N -0.50 -21.09 2.81 -594.30 -1.67 -22.76 16 11 C -0.02 -1.10 6.57 38.46 0.25 -0.85 16 12 C -0.10 -5.10 9.24 22.12 0.20 -4.89 16 13 C -0.23 -12.18 9.74 22.48 0.22 -11.96 16 14 C 0.08 4.63 5.59 -21.28 -0.12 4.51 16 15 C -0.48 -26.99 9.05 23.40 0.21 -26.78 16 16 H 0.08 4.43 7.89 -2.91 -0.02 4.41 16 17 C 0.03 1.61 5.20 85.24 0.44 2.05 16 18 N -0.82 -44.43 10.78 21.82 0.24 -44.19 16 19 Si 0.99 38.87 29.59 68.60 2.03 40.90 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 23 C -0.18 -10.19 8.64 22.48 0.19 -10.00 16 24 C -0.11 -6.30 9.18 22.12 0.20 -6.10 16 25 C 0.52 18.30 5.54 87.94 0.49 18.79 16 26 O -0.49 -19.32 15.02 -2.88 -0.04 -19.36 16 27 H 0.01 0.43 7.42 -2.39 -0.02 0.41 16 28 H 0.06 1.18 7.42 -2.39 -0.02 1.17 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.45 7.40 8.96 -92.71 -0.83 6.57 16 38 H 0.13 6.34 5.32 -2.91 -0.02 6.33 16 39 H 0.11 5.51 8.06 -2.91 -0.02 5.49 16 40 H 0.29 14.15 8.30 -92.70 -0.77 13.38 16 41 H 0.11 6.74 6.04 -2.91 -0.02 6.72 16 42 H 0.13 7.03 5.13 -2.91 -0.01 7.02 16 Total: -1.00 -77.78 347.60 3.24 -74.54 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.24 Total: 32.00 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 6.07 Total: -4.72 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.48 Total: -85.55 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.61 Total: -57.15 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -77.78 3.24 -74.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840898817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.768 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds