Wall clock time and date at job start Tue Mar 31 2020 13:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38279 * 119.92823 * 2 1 4 4 C 1.38113 * 120.07068 * 179.97438 * 3 2 1 5 5 C 1.38878 * 119.92848 * 0.02805 * 4 3 2 6 6 N 1.39921 * 120.07110 * 179.97438 * 5 4 3 7 7 C 1.46505 * 119.99944 * 236.01982 * 6 5 4 8 8 C 1.50703 * 109.46903 * 90.00535 * 7 6 5 9 9 H 1.07999 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99920 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99990 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47144 * 59.99951 * 12 10 8 14 14 H 1.48505 * 109.47197 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47302 * 299.99978 * 12 10 8 16 16 C 1.34777 * 120.00011 * 56.02046 * 6 5 4 17 17 O 1.21283 * 119.99793 * 4.20349 * 16 6 5 18 18 C 1.50697 * 119.99920 * 184.20239 * 16 6 5 19 19 H 1.09000 * 110.50647 * 40.70766 * 18 16 6 20 20 N 1.47101 * 110.56386 * 163.44239 * 18 16 6 21 21 C 1.34011 * 108.87750 * 118.57302 * 20 18 16 22 22 O 1.21511 * 123.06529 * 180.02562 * 21 20 18 23 23 O 1.33764 * 113.85523 * 0.02562 * 21 20 18 24 24 C 1.46040 * 109.51710 * 0.08108 * 23 21 20 25 25 H 1.08993 * 110.63677 * 118.47392 * 24 23 21 26 26 C 1.53005 * 110.56640 * 241.32171 * 24 23 21 27 27 C 1.38872 * 119.85893 * 359.95913 * 5 4 3 28 28 C 1.38117 * 119.92799 * 0.03652 * 27 5 4 29 29 H 1.08993 * 109.47443 * 89.99413 * 1 2 3 30 30 H 1.09005 * 109.46795 * 209.99773 * 1 2 3 31 31 H 1.09000 * 109.46828 * 329.99166 * 1 2 3 32 32 H 1.07999 * 119.96593 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.04068 * 179.74858 * 4 3 2 34 34 H 1.09004 * 109.46847 * 209.99421 * 7 6 5 35 35 H 1.08993 * 109.47065 * 330.00335 * 7 6 5 36 36 H 0.96994 * 119.99423 * 179.97438 * 11 10 8 37 37 H 0.96998 * 125.55912 * 298.55068 * 20 18 16 38 38 H 1.08995 * 109.46747 * 174.41282 * 26 24 23 39 39 H 1.08998 * 109.46882 * 294.40849 * 26 24 23 40 40 H 1.09001 * 109.47169 * 54.40988 * 26 24 23 41 41 H 1.07997 * 120.03331 * 180.02562 * 27 5 4 42 42 H 1.07998 * 119.96404 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6731 0.0000 0.0005 7 6 6.4056 -0.7091 -1.0517 8 6 6.6569 0.2261 -2.2064 9 1 6.3057 1.2464 -2.1613 10 6 7.3352 -0.2209 -3.3205 11 7 7.7633 -1.4633 -3.3752 12 14 7.6460 0.9380 -4.7521 13 1 8.4477 2.0975 -4.2853 14 1 8.3886 0.2193 -5.8186 15 1 6.3483 1.4183 -5.2909 16 6 6.3470 0.6523 0.9684 17 8 5.7430 1.1746 1.8812 18 6 7.8510 0.7325 0.9164 19 1 8.1889 0.9085 -0.1049 20 7 8.3433 1.7899 1.8128 21 6 9.1268 1.2355 2.7480 22 8 9.6706 1.8788 3.6237 23 8 9.2554 -0.0907 2.6292 24 6 8.4824 -0.5549 1.4804 25 1 9.1349 -1.0171 0.7398 26 6 7.3947 -1.5349 1.9250 27 6 3.5781 -1.2018 0.0008 28 6 2.1969 -1.1984 0.0003 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6552 2.1327 0.0004 33 1 4.1164 2.1380 -0.0036 34 1 7.3581 -1.0623 -0.6564 35 1 5.8166 -1.5597 -1.3944 36 1 8.2401 -1.7778 -4.1591 37 1 8.1350 2.7344 1.7388 38 1 6.7674 -1.7928 1.0718 39 1 7.8592 -2.4381 2.3207 40 1 6.7829 -1.0719 2.6992 41 1 4.1164 -2.1381 0.0011 42 1 1.6552 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841387786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:06 Heat of formation + Delta-G solvation = -75.905426 kcal Electronic energy + Delta-G solvation = -27615.862020 eV Core-core repulsion = 23754.391789 eV Total energy + Delta-G solvation = -3861.470232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78541 -39.98201 -38.34174 -36.97837 -35.58708 -34.46711 -33.03379 -32.25533 -31.15444 -30.67671 -27.76367 -27.23338 -25.71146 -23.58098 -23.11314 -22.19711 -22.09498 -21.21526 -19.23663 -18.11114 -17.17255 -17.01102 -16.73109 -16.27592 -15.63225 -15.33583 -15.13662 -14.77811 -14.59595 -14.53185 -14.10822 -13.77969 -13.56630 -13.32862 -13.18711 -13.02753 -12.69961 -12.55270 -12.15898 -12.02765 -11.84446 -11.66758 -11.44098 -11.39739 -11.18191 -10.96405 -10.84716 -10.65724 -10.50694 -10.41040 -10.07587 -9.98174 -9.04635 -8.84076 -8.78940 -8.62216 -7.65206 -6.42085 -4.51764 1.56325 1.71947 2.69341 2.81493 2.93619 3.10868 3.17390 3.19614 3.30375 3.76886 4.02963 4.15211 4.27176 4.62530 4.90766 4.96685 5.02624 5.06685 5.08267 5.27294 5.33575 5.47257 5.56808 5.64963 5.68146 5.76719 5.79450 5.84678 5.95115 6.00280 6.15872 6.29453 6.43181 6.61175 6.72145 6.83592 6.86431 6.90651 7.05443 7.36758 7.42564 7.51708 7.73745 7.82925 8.24566 8.43697 8.59364 9.17869 10.64172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008484 B = 0.006263 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.718730 B = 4469.591053 C = 6683.380435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.109 4.109 4 C -0.106 4.106 5 C 0.169 3.831 6 N -0.550 5.550 7 C 0.230 3.770 8 C -0.549 4.549 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.886 5.886 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.518 3.482 17 O -0.537 6.537 18 C 0.079 3.921 19 H 0.147 0.853 20 N -0.710 5.710 21 C 0.652 3.348 22 O -0.532 6.532 23 O -0.325 6.325 24 C 0.087 3.913 25 H 0.134 0.866 26 C -0.177 4.177 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.270 0.730 37 H 0.437 0.563 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -0.812 3.339 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.126 4.126 5 C 0.078 3.922 6 N -0.277 5.277 7 C 0.112 3.888 8 C -0.588 4.588 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.725 3.275 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.200 1.200 16 C 0.305 3.695 17 O -0.414 6.414 18 C -0.030 4.030 19 H 0.164 0.836 20 N -0.381 5.381 21 C 0.405 3.595 22 O -0.418 6.418 23 O -0.236 6.236 24 C 0.031 3.969 25 H 0.151 0.849 26 C -0.234 4.234 27 C -0.143 4.143 28 C -0.128 4.128 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.280 0.720 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.741 -0.707 4.309 8.032 hybrid contribution 0.063 0.992 -1.364 1.688 sum -6.678 0.285 2.945 7.304 Atomic orbital electron populations 1.20719 0.91591 1.02261 1.01926 1.19801 0.95744 0.93217 1.01924 1.20793 0.93506 0.97360 1.01147 1.21068 0.94067 0.97388 1.00059 1.17554 0.82921 0.93232 0.98535 1.45955 1.03691 1.51152 1.26861 1.19768 0.91965 0.92899 0.84212 1.21360 1.37923 0.98166 1.01305 0.91848 1.24910 0.94860 0.95290 0.98293 1.69879 1.37061 1.15080 1.30241 0.86543 0.78684 0.80719 0.81576 1.19918 1.20929 1.19985 1.20298 0.89094 0.78395 0.81728 1.90708 1.69750 1.46557 1.34355 1.22550 0.93199 0.88565 0.98698 0.83578 1.45672 1.50711 1.10814 1.30870 1.18402 0.78698 0.81008 0.81430 1.91037 1.52863 1.61688 1.36252 1.87328 1.66407 1.21275 1.48573 1.23881 0.93626 0.93550 0.85881 0.84873 1.22408 0.97763 0.99289 1.03955 1.21065 0.94197 0.97208 1.01854 1.20770 0.93432 0.97343 1.01212 0.91540 0.91904 0.91952 0.86336 0.86345 0.93782 0.93488 0.92068 0.72042 0.88581 0.90183 0.91147 0.85792 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.11 -1.45 5.88 -104.59 -0.62 -2.06 16 3 C -0.11 -1.62 9.69 -39.61 -0.38 -2.00 16 4 C -0.11 -1.84 8.90 -39.39 -0.35 -2.19 16 5 C 0.17 3.07 5.20 -83.69 -0.43 2.63 16 6 N -0.55 -10.08 1.98 -114.73 -0.23 -10.31 16 7 C 0.23 4.59 3.67 -5.19 -0.02 4.57 16 8 C -0.55 -12.52 8.73 -34.44 -0.30 -12.82 16 9 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -21.73 13.29 55.43 0.74 -20.99 16 12 Si 0.90 18.87 29.54 -169.99 -5.02 13.85 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 C 0.52 9.37 4.72 -10.99 -0.05 9.32 16 17 O -0.54 -10.89 15.74 5.56 0.09 -10.80 16 18 C 0.08 1.28 3.19 -68.19 -0.22 1.06 16 19 H 0.15 2.38 6.92 -51.93 -0.36 2.02 16 20 N -0.71 -11.39 5.64 -59.35 -0.33 -11.72 16 21 C 0.65 11.89 9.16 53.71 0.49 12.38 16 22 O -0.53 -11.19 18.04 -19.12 -0.34 -11.54 16 23 O -0.33 -5.55 10.81 -37.81 -0.41 -5.96 16 24 C 0.09 1.29 3.56 -26.16 -0.09 1.20 16 25 H 0.13 1.74 8.01 -51.93 -0.42 1.33 16 26 C -0.18 -2.51 8.35 37.16 0.31 -2.20 16 27 C -0.12 -1.99 9.31 -39.39 -0.37 -2.36 16 28 C -0.11 -1.53 9.69 -39.61 -0.38 -1.91 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.12 2.10 8.01 -52.49 -0.42 1.67 16 34 H 0.04 0.85 5.05 -51.93 -0.26 0.58 16 35 H 0.05 1.01 7.30 -51.93 -0.38 0.63 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.44 6.25 8.96 -40.82 -0.37 5.89 16 38 H 0.10 1.40 5.12 -51.93 -0.27 1.13 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.11 7.46 -51.93 -0.39 0.72 16 41 H 0.12 1.86 7.78 -52.49 -0.41 1.45 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -28.78 351.19 -7.71 -36.49 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.34 Total: 9.22 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.15 Total: 6.47 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.17 Total: -43.03 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.67 Total: -28.29 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.78 -7.71 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841387786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds