Wall clock time and date at job start Tue Mar 31 2020 13:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.92619 * 2 1 4 4 C 1.38111 * 120.06815 * 180.02562 * 3 2 1 5 5 C 1.38868 * 119.93271 * 359.97438 * 4 3 2 6 6 N 1.39927 * 120.07025 * 179.72211 * 5 4 3 7 7 C 1.46501 * 119.99960 * 55.57219 * 6 5 4 8 8 C 1.50708 * 109.46970 * 90.00203 * 7 6 5 9 9 H 1.07999 * 119.99832 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99807 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00128 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99992 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46798 * 90.00341 * 12 10 8 14 14 H 1.48501 * 109.47158 * 209.99678 * 12 10 8 15 15 H 1.48491 * 109.46988 * 330.00166 * 12 10 8 16 16 C 1.34776 * 119.99707 * 235.56804 * 6 5 4 17 17 O 1.21291 * 119.99973 * 3.93289 * 16 6 5 18 18 C 1.50698 * 120.00043 * 183.92672 * 16 6 5 19 19 H 1.09003 * 110.50084 * 319.30242 * 18 16 6 20 20 N 1.47089 * 110.56546 * 196.56353 * 18 16 6 21 21 C 1.34328 * 108.70308 * 241.47660 * 20 18 16 22 22 O 1.21504 * 123.02728 * 179.97438 * 21 20 18 23 23 O 1.33770 * 113.90072 * 359.86141 * 21 20 18 24 24 C 1.45706 * 109.47685 * 0.08703 * 23 21 20 25 25 H 1.08998 * 110.52252 * 118.63211 * 24 23 21 26 26 C 1.53002 * 110.63644 * 241.30896 * 24 23 21 27 27 C 1.38873 * 119.85818 * 359.97438 * 5 4 3 28 28 C 1.38113 * 119.92816 * 0.02562 * 27 5 4 29 29 H 1.08999 * 109.46958 * 90.00404 * 1 2 3 30 30 H 1.09003 * 109.47092 * 209.99459 * 1 2 3 31 31 H 1.08997 * 109.47409 * 330.00180 * 1 2 3 32 32 H 1.08001 * 119.96456 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.03373 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.46686 * 209.99598 * 7 6 5 35 35 H 1.08999 * 109.47409 * 329.99955 * 7 6 5 36 36 H 0.96999 * 120.00088 * 180.02562 * 11 10 8 37 37 H 0.96997 * 125.56293 * 61.43035 * 20 18 16 38 38 H 1.08999 * 109.46847 * 174.66187 * 26 24 23 39 39 H 1.09007 * 109.47155 * 294.65494 * 26 24 23 40 40 H 1.08998 * 109.47428 * 54.65887 * 26 24 23 41 41 H 1.08001 * 120.03717 * 179.97438 * 27 5 4 42 42 H 1.08004 * 119.96423 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0002 -0.0005 6 7 5.6731 0.0003 -0.0069 7 6 6.4104 0.7204 1.0343 8 6 6.6670 -0.2025 2.1977 9 1 6.3156 -1.2232 2.1649 10 6 7.3502 0.2562 3.3039 11 7 7.7776 1.4993 3.3440 12 14 7.6677 -0.8876 4.7462 13 1 8.9614 -1.5888 4.5465 14 1 7.7220 -0.0971 6.0022 15 1 6.5723 -1.8860 4.8366 16 6 6.3426 -0.6622 -0.9710 17 8 5.7341 -1.1984 -1.8729 18 6 7.8471 -0.7366 -0.9285 19 1 8.2683 0.2217 -0.6242 20 7 8.3815 -1.1436 -2.2371 21 6 9.0413 -2.3045 -2.0907 22 8 9.5875 -2.8766 -3.0130 23 8 9.0443 -2.7719 -0.8373 24 6 8.3070 -1.8569 0.0242 25 1 7.4468 -2.3587 0.4672 26 6 9.2179 -1.2923 1.1161 27 6 3.5781 -1.2017 0.0005 28 6 2.1970 -1.1983 0.0011 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1328 0.0004 33 1 4.1162 2.1383 -0.0010 34 1 7.3610 1.0695 0.6309 35 1 5.8228 1.5746 1.3708 36 1 8.2586 1.8220 4.1221 37 1 8.2738 -0.6540 -3.0674 38 1 8.6750 -0.5410 1.6896 39 1 9.5326 -2.0981 1.7794 40 1 10.0949 -0.8356 0.6575 41 1 4.1164 -2.1379 0.0001 42 1 1.6553 -2.1327 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841387788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:16 Heat of formation + Delta-G solvation = -75.822737 kcal Electronic energy + Delta-G solvation = -27694.694764 eV Core-core repulsion = 23833.228118 eV Total energy + Delta-G solvation = -3861.466646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61958 -39.95000 -38.29615 -36.93593 -35.62486 -34.44196 -33.26484 -31.81738 -31.16816 -30.67444 -27.77697 -27.42164 -25.42550 -23.63754 -22.71623 -22.20464 -21.99776 -21.35754 -19.38002 -17.70063 -17.43922 -16.99915 -16.57165 -16.30109 -15.61329 -15.26057 -15.12878 -14.72844 -14.58356 -14.20722 -14.06384 -13.76281 -13.62652 -13.21640 -13.13636 -12.94106 -12.72991 -12.44952 -12.21820 -12.13105 -11.74677 -11.45836 -11.44062 -11.22397 -10.95364 -10.89165 -10.82216 -10.54805 -10.43078 -10.32619 -10.12158 -9.98461 -9.01386 -8.88444 -8.74884 -8.62348 -7.65930 -6.48336 -4.55638 1.56091 1.71884 2.73904 2.81800 3.01189 3.05856 3.16176 3.19094 3.37284 3.85534 4.03191 4.10797 4.42425 4.72690 4.83699 4.99876 5.06503 5.07766 5.26899 5.30835 5.47045 5.57793 5.61055 5.64313 5.68709 5.78874 5.95279 6.00063 6.21295 6.29199 6.31206 6.42457 6.60744 6.72451 6.83521 6.85931 6.93285 6.99707 7.04990 7.37637 7.45836 7.50680 7.68415 7.80871 8.29128 8.40986 8.55113 9.08646 10.56496 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.006183 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.499781 B = 4527.451747 C = 6670.726003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.109 4.109 4 C -0.123 4.123 5 C 0.168 3.832 6 N -0.547 5.547 7 C 0.228 3.772 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.073 3.927 11 N -0.881 5.881 12 Si 0.887 3.113 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.509 3.491 17 O -0.536 6.536 18 C 0.087 3.913 19 H 0.132 0.868 20 N -0.715 5.715 21 C 0.651 3.349 22 O -0.534 6.534 23 O -0.328 6.328 24 C 0.100 3.900 25 H 0.118 0.882 26 C -0.185 4.185 27 C -0.106 4.106 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.271 0.729 37 H 0.435 0.565 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 1.380 -2.667 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.143 4.143 5 C 0.076 3.924 6 N -0.274 5.274 7 C 0.110 3.890 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.517 5.517 12 Si 0.713 3.287 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.295 3.705 17 O -0.413 6.413 18 C -0.022 4.022 19 H 0.149 0.851 20 N -0.386 5.386 21 C 0.405 3.595 22 O -0.420 6.420 23 O -0.238 6.238 24 C 0.044 3.956 25 H 0.136 0.864 26 C -0.241 4.241 27 C -0.126 4.126 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.278 0.722 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.267 0.642 -3.234 7.081 hybrid contribution 0.098 -0.097 0.717 0.730 sum -6.169 0.545 -2.517 6.685 Atomic orbital electron populations 1.20717 0.91583 1.02373 1.01821 1.19804 0.95748 0.93209 1.01922 1.20770 0.93424 0.97338 1.01245 1.21058 0.94175 0.97226 1.01792 1.17568 0.82914 0.93256 0.98632 1.45941 1.03770 1.50194 1.27454 1.19799 0.91964 0.92753 0.84480 1.21374 1.37117 0.98481 1.01219 0.91506 1.24880 0.95130 0.95257 0.97966 1.69901 1.36584 1.14621 1.30642 0.86652 0.79365 0.80874 0.81804 1.19667 1.20795 1.19426 1.20500 0.89303 0.78766 0.81945 1.90712 1.69471 1.45907 1.35171 1.22407 0.92847 1.02504 0.84444 0.85082 1.45769 1.56478 1.25027 1.11337 1.18529 0.78135 0.80022 0.82850 1.91018 1.50212 1.62252 1.38561 1.87301 1.70509 1.47491 1.18542 1.23705 0.95756 0.86477 0.89615 0.86434 1.22790 0.99671 1.04178 0.97505 1.21067 0.94097 0.97359 1.00075 1.20797 0.93495 0.97375 1.01104 0.91663 0.91881 0.91845 0.86162 0.85776 0.93836 0.93388 0.91935 0.72244 0.83630 0.91566 0.92668 0.86326 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.11 -1.45 5.88 -104.59 -0.62 -2.07 16 3 C -0.11 -1.54 9.69 -39.61 -0.38 -1.92 16 4 C -0.12 -1.99 9.30 -39.39 -0.37 -2.36 16 5 C 0.17 3.06 5.22 -83.69 -0.44 2.62 16 6 N -0.55 -10.10 2.57 -114.73 -0.29 -10.40 16 7 C 0.23 4.48 4.76 -5.19 -0.02 4.45 16 8 C -0.54 -11.52 6.10 -34.44 -0.21 -11.73 16 9 H 0.07 1.46 7.57 -52.49 -0.40 1.06 16 10 C 0.07 1.60 4.00 -17.82 -0.07 1.53 16 11 N -0.88 -20.49 13.29 55.43 0.74 -19.76 16 12 Si 0.89 17.89 29.54 -169.99 -5.02 12.87 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 C 0.51 9.36 6.57 -10.99 -0.07 9.29 16 17 O -0.54 -11.09 15.81 5.55 0.09 -11.00 16 18 C 0.09 1.43 3.01 -68.20 -0.21 1.23 16 19 H 0.13 1.98 5.91 -51.93 -0.31 1.67 16 20 N -0.71 -11.54 5.67 -59.28 -0.34 -11.88 16 21 C 0.65 12.35 9.16 53.85 0.49 12.85 16 22 O -0.53 -11.52 18.04 -19.11 -0.34 -11.87 16 23 O -0.33 -6.11 10.80 -37.83 -0.41 -6.52 16 24 C 0.10 1.71 3.38 -26.16 -0.09 1.62 16 25 H 0.12 2.05 7.42 -51.93 -0.39 1.67 16 26 C -0.19 -3.07 9.14 37.16 0.34 -2.73 16 27 C -0.11 -1.86 8.87 -39.39 -0.35 -2.20 16 28 C -0.11 -1.62 9.69 -39.61 -0.38 -2.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.90 7.75 -52.48 -0.41 1.49 16 34 H 0.04 0.84 5.91 -51.93 -0.31 0.53 16 35 H 0.05 1.01 7.26 -51.93 -0.38 0.64 16 36 H 0.27 6.11 8.31 -40.82 -0.34 5.78 16 37 H 0.43 6.07 8.96 -40.82 -0.37 5.71 16 38 H 0.15 2.71 3.44 -51.93 -0.18 2.53 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 2.13 7.96 -52.49 -0.42 1.71 16 42 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -27.10 349.01 -7.57 -34.67 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.23 Total: 10.79 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.01 Total: 7.83 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.11 Total: -42.03 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.67 Total: -29.39 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.10 -7.57 -34.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841387788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.156 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds