Wall clock time and date at job start Tue Mar 31 2020 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38290 * 119.92619 * 2 1 4 4 C 1.38111 * 120.06815 * 180.02562 * 3 2 1 5 5 C 1.38868 * 119.93271 * 359.97438 * 4 3 2 6 6 N 1.39927 * 120.07025 * 179.72211 * 5 4 3 7 7 C 1.46501 * 119.99960 * 55.57219 * 6 5 4 8 8 C 1.50708 * 109.46970 * 90.00203 * 7 6 5 9 9 H 1.07999 * 119.99832 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99807 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00128 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99992 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46798 * 90.00341 * 12 10 8 14 14 H 1.48501 * 109.47158 * 209.99678 * 12 10 8 15 15 H 1.48491 * 109.46988 * 330.00166 * 12 10 8 16 16 C 1.34776 * 119.99707 * 235.56804 * 6 5 4 17 17 O 1.21291 * 119.99973 * 3.93289 * 16 6 5 18 18 C 1.50698 * 120.00043 * 183.92672 * 16 6 5 19 19 H 1.09003 * 110.50084 * 319.30242 * 18 16 6 20 20 N 1.47089 * 110.56546 * 196.56353 * 18 16 6 21 21 C 1.34328 * 108.70308 * 241.47660 * 20 18 16 22 22 O 1.21504 * 123.02728 * 179.97438 * 21 20 18 23 23 O 1.33770 * 113.90072 * 359.86141 * 21 20 18 24 24 C 1.45706 * 109.47685 * 0.08703 * 23 21 20 25 25 H 1.08998 * 110.52252 * 118.63211 * 24 23 21 26 26 C 1.53002 * 110.63644 * 241.30896 * 24 23 21 27 27 C 1.38873 * 119.85818 * 359.97438 * 5 4 3 28 28 C 1.38113 * 119.92816 * 0.02562 * 27 5 4 29 29 H 1.08999 * 109.46958 * 90.00404 * 1 2 3 30 30 H 1.09003 * 109.47092 * 209.99459 * 1 2 3 31 31 H 1.08997 * 109.47409 * 330.00180 * 1 2 3 32 32 H 1.08001 * 119.96456 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.03373 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.46686 * 209.99598 * 7 6 5 35 35 H 1.08999 * 109.47409 * 329.99955 * 7 6 5 36 36 H 0.96999 * 120.00088 * 180.02562 * 11 10 8 37 37 H 0.96997 * 125.56293 * 61.43035 * 20 18 16 38 38 H 1.08999 * 109.46847 * 174.66187 * 26 24 23 39 39 H 1.09007 * 109.47155 * 294.65494 * 26 24 23 40 40 H 1.08998 * 109.47428 * 54.65887 * 26 24 23 41 41 H 1.08001 * 120.03717 * 179.97438 * 27 5 4 42 42 H 1.08004 * 119.96423 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0002 -0.0005 6 7 5.6731 0.0003 -0.0069 7 6 6.4104 0.7204 1.0343 8 6 6.6670 -0.2025 2.1977 9 1 6.3156 -1.2232 2.1649 10 6 7.3502 0.2562 3.3039 11 7 7.7776 1.4993 3.3440 12 14 7.6677 -0.8876 4.7462 13 1 8.9614 -1.5888 4.5465 14 1 7.7220 -0.0971 6.0022 15 1 6.5723 -1.8860 4.8366 16 6 6.3426 -0.6622 -0.9710 17 8 5.7341 -1.1984 -1.8729 18 6 7.8471 -0.7366 -0.9285 19 1 8.2683 0.2217 -0.6242 20 7 8.3815 -1.1436 -2.2371 21 6 9.0413 -2.3045 -2.0907 22 8 9.5875 -2.8766 -3.0130 23 8 9.0443 -2.7719 -0.8373 24 6 8.3070 -1.8569 0.0242 25 1 7.4468 -2.3587 0.4672 26 6 9.2179 -1.2923 1.1161 27 6 3.5781 -1.2017 0.0005 28 6 2.1970 -1.1983 0.0011 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1328 0.0004 33 1 4.1162 2.1383 -0.0010 34 1 7.3610 1.0695 0.6309 35 1 5.8228 1.5746 1.3708 36 1 8.2586 1.8220 4.1221 37 1 8.2738 -0.6540 -3.0674 38 1 8.6750 -0.5410 1.6896 39 1 9.5326 -2.0981 1.7794 40 1 10.0949 -0.8356 0.6575 41 1 4.1164 -2.1379 0.0001 42 1 1.6553 -2.1327 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841387788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:15 Heat of formation + Delta-G solvation = -91.657224 kcal Electronic energy + Delta-G solvation = -27695.381399 eV Core-core repulsion = 23833.228118 eV Total energy + Delta-G solvation = -3862.153281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.07826 -41.33616 -39.59973 -38.48463 -37.10718 -35.87490 -34.84693 -33.17612 -32.44444 -31.87120 -29.37241 -28.69390 -26.63438 -25.21431 -24.12386 -23.51305 -23.40022 -22.61266 -20.74078 -19.14870 -18.88858 -18.60921 -18.02604 -17.83084 -17.08858 -16.62229 -16.42022 -16.23226 -16.00690 -15.63840 -15.43108 -15.11575 -14.63590 -14.46464 -14.45456 -14.35183 -14.25675 -13.89935 -13.69606 -13.11951 -12.96824 -12.92992 -12.78425 -12.49229 -12.42526 -12.37569 -12.13430 -12.03369 -11.99663 -11.81953 -11.71424 -11.48184 -10.55605 -10.34888 -10.26641 -9.83541 -8.99151 -8.19401 -6.29119 0.32927 0.50731 1.29413 1.35518 1.44472 1.52281 1.54988 1.57742 1.93334 2.40062 2.46747 2.83575 3.02333 3.12506 3.28799 3.62724 3.89099 3.96928 4.07116 4.11389 4.18631 4.24702 4.49582 4.51519 4.56009 4.85385 4.87100 4.91236 4.93804 4.97455 5.12511 5.17159 5.23711 5.42962 5.49798 5.56536 5.62545 5.70068 5.71156 5.75056 6.01001 6.04130 6.13978 6.33122 6.74731 6.85662 7.03521 7.37087 8.84568 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.006183 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.499781 B = 4527.451747 C = 6670.726003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.108 4.108 4 C -0.135 4.135 5 C 0.131 3.869 6 N -0.543 5.543 7 C 0.240 3.760 8 C -0.536 4.536 9 H 0.057 0.943 10 C 0.049 3.951 11 N -0.904 5.904 12 Si 0.924 3.076 13 H -0.261 1.261 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.508 3.492 17 O -0.562 6.562 18 C 0.094 3.906 19 H 0.150 0.850 20 N -0.698 5.698 21 C 0.650 3.350 22 O -0.563 6.563 23 O -0.335 6.335 24 C 0.102 3.898 25 H 0.111 0.889 26 C -0.179 4.179 27 C -0.128 4.128 28 C -0.114 4.114 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.270 0.730 37 H 0.445 0.555 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 1.901 -2.491 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.154 4.154 5 C 0.040 3.960 6 N -0.268 5.268 7 C 0.121 3.879 8 C -0.574 4.574 9 H 0.075 0.925 10 C -0.154 4.154 11 N -0.542 5.542 12 Si 0.750 3.250 13 H -0.186 1.186 14 H -0.214 1.214 15 H -0.202 1.202 16 C 0.296 3.704 17 O -0.441 6.441 18 C -0.015 4.015 19 H 0.167 0.833 20 N -0.370 5.370 21 C 0.404 3.596 22 O -0.452 6.452 23 O -0.245 6.245 24 C 0.047 3.953 25 H 0.129 0.871 26 C -0.235 4.235 27 C -0.148 4.148 28 C -0.133 4.133 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.290 0.710 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.617 1.181 -3.050 8.290 hybrid contribution 0.372 -0.251 0.673 0.809 sum -7.246 0.929 -2.378 7.682 Atomic orbital electron populations 1.20793 0.88557 1.03798 1.03126 1.20277 0.97900 0.92401 0.99570 1.21175 0.92655 0.99010 0.99818 1.21247 0.95394 0.96666 1.02117 1.17892 0.82756 0.94348 1.01013 1.45852 1.04246 1.49785 1.26946 1.19573 0.91950 0.91972 0.84429 1.21410 1.36283 0.98123 1.01631 0.92455 1.25224 0.95169 0.95795 0.99203 1.69951 1.37588 1.15555 1.31101 0.86081 0.79387 0.79612 0.79950 1.18556 1.21437 1.20224 1.20738 0.89915 0.78280 0.81503 1.90692 1.70179 1.47074 1.36136 1.22421 0.91675 1.03087 0.84333 0.83287 1.45671 1.55358 1.24134 1.11838 1.18588 0.78104 0.80311 0.82620 1.90994 1.51605 1.63153 1.39420 1.87283 1.70617 1.47994 1.18605 1.23727 0.95591 0.86369 0.89663 0.87105 1.22677 0.99774 1.03863 0.97177 1.21116 0.95433 0.96545 1.01666 1.21112 0.92578 0.99145 1.00444 0.90243 0.90749 0.90235 0.83079 0.85466 0.93209 0.94892 0.92019 0.70966 0.85180 0.91041 0.91223 0.87975 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 2 C -0.10 -2.51 5.88 -19.84 -0.12 -2.63 16 3 C -0.11 -2.81 9.69 22.25 0.22 -2.60 16 4 C -0.13 -4.29 9.30 22.39 0.21 -4.08 16 5 C 0.13 4.80 5.22 38.15 0.20 5.00 16 6 N -0.54 -20.18 2.57 -635.28 -1.63 -21.81 16 7 C 0.24 9.39 4.76 85.64 0.41 9.79 16 8 C -0.54 -22.65 6.10 25.60 0.16 -22.49 16 9 H 0.06 2.52 7.57 -2.91 -0.02 2.50 16 10 C 0.05 2.13 4.00 84.65 0.34 2.47 16 11 N -0.90 -41.65 13.29 21.45 0.28 -41.37 16 12 Si 0.92 36.09 29.54 68.60 2.03 38.12 16 13 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 16 C 0.51 18.76 6.57 87.66 0.58 19.33 16 17 O -0.56 -23.49 15.81 -3.06 -0.05 -23.54 16 18 C 0.09 3.03 3.01 44.50 0.13 3.16 16 19 H 0.15 4.31 5.91 -2.39 -0.01 4.29 16 20 N -0.70 -22.04 5.67 -572.82 -3.25 -25.28 16 21 C 0.65 24.36 9.16 129.86 1.19 25.55 16 22 O -0.56 -24.19 18.04 19.67 0.35 -23.83 16 23 O -0.33 -12.30 10.80 -47.30 -0.51 -12.81 16 24 C 0.10 3.42 3.38 30.96 0.10 3.52 16 25 H 0.11 3.89 7.42 -2.39 -0.02 3.87 16 26 C -0.18 -5.71 9.14 71.98 0.66 -5.05 16 27 C -0.13 -4.50 8.87 22.39 0.20 -4.31 16 28 C -0.11 -3.26 9.69 22.25 0.22 -3.04 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.08 1.08 8.08 -2.39 -0.02 1.07 16 32 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.13 3.84 7.75 -2.91 -0.02 3.82 16 34 H 0.05 1.89 5.91 -2.38 -0.01 1.88 16 35 H 0.03 1.40 7.26 -2.39 -0.02 1.38 16 36 H 0.27 12.09 8.31 -92.71 -0.77 11.32 16 37 H 0.45 12.05 8.96 -92.71 -0.83 11.22 16 38 H 0.13 4.71 3.44 -2.39 -0.01 4.70 16 39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 3.81 7.96 -2.91 -0.02 3.79 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -57.47 349.01 2.66 -54.81 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.24 Total: 32.11 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 5.20 Total: 23.60 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -4.59 Total: -88.46 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.20 Total: -60.18 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -57.47 2.66 -54.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841387788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.850 kcal (2) G-P(sol) polarization free energy of solvation -57.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds