Wall clock time and date at job start Tue Mar 31 2020 13:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38279 * 119.93095 * 2 1 4 4 C 1.38110 * 120.07168 * 179.97438 * 3 2 1 5 5 C 1.38872 * 119.92818 * 0.02562 * 4 3 2 6 6 N 1.39927 * 120.06858 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00035 * 304.49446 * 6 5 4 8 8 C 1.50705 * 109.47345 * 270.00132 * 7 6 5 9 9 H 1.07999 * 119.99674 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00200 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99735 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00046 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46904 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47116 * 119.99700 * 12 10 8 15 15 H 1.48495 * 109.47081 * 239.99711 * 12 10 8 16 16 C 1.34779 * 120.00144 * 124.49953 * 6 5 4 17 17 O 1.21293 * 119.99600 * 356.27369 * 16 6 5 18 18 C 1.50696 * 120.00181 * 176.28107 * 16 6 5 19 19 H 1.08998 * 110.50614 * 42.73531 * 18 16 6 20 20 N 1.47093 * 110.69247 * 165.56723 * 18 16 6 21 21 C 1.34005 * 108.88124 * 118.62907 * 20 18 16 22 22 O 1.21511 * 123.07007 * 179.97438 * 21 20 18 23 23 O 1.33768 * 113.85679 * 0.02562 * 21 20 18 24 24 C 1.45700 * 109.47774 * 359.97438 * 23 21 20 25 25 H 1.09004 * 110.51919 * 241.37132 * 24 23 21 26 26 C 1.52996 * 110.63712 * 118.69126 * 24 23 21 27 27 C 1.38868 * 119.86049 * 0.26953 * 5 4 3 28 28 C 1.38119 * 119.92722 * 359.47478 * 27 5 4 29 29 H 1.09004 * 109.47303 * 89.99639 * 1 2 3 30 30 H 1.09003 * 109.47513 * 209.99639 * 1 2 3 31 31 H 1.08997 * 109.47399 * 329.99698 * 1 2 3 32 32 H 1.08003 * 119.96711 * 0.02627 * 3 2 1 33 33 H 1.08001 * 120.03567 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47263 * 30.00058 * 7 6 5 35 35 H 1.09001 * 109.47184 * 150.00083 * 7 6 5 36 36 H 0.97005 * 119.99015 * 180.02562 * 11 10 8 37 37 H 0.97000 * 125.55743 * 298.66920 * 20 18 16 38 38 H 1.08994 * 109.47368 * 303.41077 * 26 24 23 39 39 H 1.08999 * 109.47411 * 63.41872 * 26 24 23 40 40 H 1.09008 * 109.46948 * 183.41104 * 26 24 23 41 41 H 1.08006 * 120.03550 * 179.72309 * 27 5 4 42 42 H 1.07999 * 119.96656 * 180.24916 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2738 -0.0001 0.0005 6 7 5.6731 -0.0001 0.0005 7 6 6.4056 0.7184 -1.0451 8 6 6.6568 -0.2062 -2.2084 9 1 6.3062 -1.2270 -2.1722 10 6 7.3350 0.2509 -3.3184 11 7 7.7623 1.4939 -3.3622 12 14 7.6457 -0.8950 -4.7605 13 1 7.0677 -2.2306 -4.4649 14 1 7.0086 -0.3386 -5.9811 15 1 9.1081 -1.0270 -4.9818 16 6 6.3470 -0.6612 0.9625 17 8 5.7424 -1.1992 1.8659 18 6 7.8516 -0.7317 0.9157 19 1 8.2710 0.2374 0.6454 20 7 8.3910 -1.1864 2.2063 21 6 9.0540 -2.3358 2.0185 22 8 9.6047 -2.9382 2.9186 23 8 9.0550 -2.7586 0.7495 24 6 8.3122 -1.8164 -0.0772 25 1 7.4524 -2.3053 -0.5353 26 6 9.2181 -1.2105 -1.1510 27 6 3.5780 -1.2018 -0.0057 28 6 2.1968 -1.1984 -0.0008 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6552 2.1327 0.0004 33 1 4.1163 2.1381 0.0001 34 1 5.8165 1.5721 -1.3802 35 1 7.3580 1.0681 -0.6467 36 1 8.2392 1.8155 -4.1434 37 1 8.2837 -0.7293 3.0551 38 1 10.0777 -0.7373 -0.6765 39 1 9.5612 -1.9970 -1.8231 40 1 8.6605 -0.4653 -1.7185 41 1 4.1163 -2.1382 -0.0102 42 1 1.6551 -2.1327 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841387789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:20 Heat of formation + Delta-G solvation = -90.818931 kcal Electronic energy + Delta-G solvation = -27714.634380 eV Core-core repulsion = 23852.517450 eV Total energy + Delta-G solvation = -3862.116930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09496 -41.33759 -39.60098 -38.48397 -37.11953 -35.88280 -34.87246 -33.17772 -32.42764 -31.87000 -29.37935 -28.69100 -26.63317 -25.21522 -24.12101 -23.51296 -23.39431 -22.62135 -20.74574 -19.14867 -18.88839 -18.61045 -18.02853 -17.82723 -17.09065 -16.62214 -16.41996 -16.23401 -16.00683 -15.63079 -15.43021 -15.12960 -14.58650 -14.49667 -14.45231 -14.35498 -14.26362 -13.91684 -13.70435 -13.11442 -12.95523 -12.92239 -12.77901 -12.50368 -12.49181 -12.34090 -12.12593 -12.02601 -11.99408 -11.80937 -11.68863 -11.48163 -10.54947 -10.36080 -10.26234 -9.83429 -8.99491 -8.20186 -6.29339 0.33053 0.50808 1.30333 1.35206 1.42249 1.51922 1.55788 1.58135 1.93488 2.39519 2.46868 2.83653 3.02083 3.11717 3.28956 3.63396 3.90072 3.97019 4.07218 4.11487 4.19801 4.25326 4.49601 4.51625 4.56103 4.85438 4.87790 4.92122 4.93281 4.98580 5.12551 5.17159 5.23790 5.42990 5.50027 5.57832 5.62689 5.70263 5.71264 5.74897 6.01093 6.04644 6.14144 6.32914 6.74498 6.85989 7.03442 7.36472 8.83885 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.006177 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.329203 B = 4531.555972 C = 6653.643607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.108 4.108 4 C -0.134 4.134 5 C 0.131 3.869 6 N -0.543 5.543 7 C 0.239 3.761 8 C -0.535 4.535 9 H 0.057 0.943 10 C 0.050 3.950 11 N -0.903 5.903 12 Si 0.923 3.077 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.270 1.270 16 C 0.508 3.492 17 O -0.562 6.562 18 C 0.095 3.905 19 H 0.151 0.849 20 N -0.697 5.697 21 C 0.650 3.350 22 O -0.564 6.564 23 O -0.336 6.336 24 C 0.102 3.898 25 H 0.111 0.889 26 C -0.180 4.180 27 C -0.128 4.128 28 C -0.114 4.114 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.445 0.555 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 2.162 2.589 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.154 4.154 5 C 0.040 3.960 6 N -0.268 5.268 7 C 0.120 3.880 8 C -0.574 4.574 9 H 0.075 0.925 10 C -0.153 4.153 11 N -0.541 5.541 12 Si 0.749 3.251 13 H -0.195 1.195 14 H -0.214 1.214 15 H -0.195 1.195 16 C 0.296 3.704 17 O -0.441 6.441 18 C -0.015 4.015 19 H 0.168 0.832 20 N -0.369 5.369 21 C 0.404 3.596 22 O -0.453 6.453 23 O -0.246 6.246 24 C 0.046 3.954 25 H 0.128 0.872 26 C -0.237 4.237 27 C -0.148 4.148 28 C -0.133 4.133 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.290 0.710 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.679 1.432 3.128 8.415 hybrid contribution 0.380 -0.288 -0.683 0.833 sum -7.299 1.144 2.445 7.782 Atomic orbital electron populations 1.20794 0.88561 1.03775 1.03152 1.20274 0.97897 0.92400 0.99549 1.21174 0.92659 0.99007 0.99817 1.21250 0.95388 0.96662 1.02075 1.17889 0.82741 0.94347 1.01036 1.45847 1.04231 1.49897 1.26871 1.19584 0.92092 0.92001 0.84302 1.21438 1.36407 0.98099 1.01445 0.92468 1.25207 0.95156 0.95803 0.99159 1.69962 1.37773 1.15532 1.30839 0.86038 0.78617 0.79986 0.80442 1.19476 1.21383 1.19538 1.20734 0.89881 0.78288 0.81532 1.90692 1.70408 1.46968 1.36024 1.22411 0.91658 1.02913 0.84485 0.83206 1.45599 1.54921 1.24732 1.11602 1.18508 0.78204 0.80420 0.82516 1.90997 1.51561 1.61095 1.41631 1.87282 1.70435 1.48460 1.18444 1.23738 0.95492 0.86065 0.90072 0.87152 1.22712 0.99923 1.03541 0.97484 1.21118 0.95430 0.96551 1.01655 1.21111 0.92571 0.99144 1.00457 0.90272 0.90763 0.90191 0.83067 0.85433 0.94823 0.93160 0.91985 0.70988 0.91258 0.91086 0.84936 0.88026 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.23 0.71 -1.03 16 2 C -0.10 -2.49 5.88 -19.85 -0.12 -2.61 16 3 C -0.11 -2.80 9.69 22.25 0.22 -2.58 16 4 C -0.13 -4.26 9.30 22.39 0.21 -4.05 16 5 C 0.13 4.79 5.21 38.15 0.20 4.98 16 6 N -0.54 -20.15 2.57 -635.30 -1.63 -21.79 16 7 C 0.24 9.33 4.73 85.63 0.40 9.74 16 8 C -0.54 -22.60 5.95 25.60 0.15 -22.45 16 9 H 0.06 2.52 7.39 -2.91 -0.02 2.50 16 10 C 0.05 2.15 3.90 84.65 0.33 2.48 16 11 N -0.90 -41.42 13.29 21.45 0.28 -41.13 16 12 Si 0.92 36.20 29.54 68.60 2.03 38.22 16 13 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 16 C 0.51 18.76 6.59 87.66 0.58 19.34 16 17 O -0.56 -23.49 15.82 -3.07 -0.05 -23.54 16 18 C 0.09 3.04 2.99 44.50 0.13 3.18 16 19 H 0.15 4.29 6.01 -2.39 -0.01 4.27 16 20 N -0.70 -22.03 5.64 -573.43 -3.23 -25.26 16 21 C 0.65 24.43 9.16 129.91 1.19 25.62 16 22 O -0.56 -24.30 18.04 19.65 0.35 -23.94 16 23 O -0.34 -12.42 10.80 -47.29 -0.51 -12.93 16 24 C 0.10 3.44 3.28 30.96 0.10 3.54 16 25 H 0.11 3.94 7.12 -2.39 -0.02 3.92 16 26 C -0.18 -5.81 9.10 71.98 0.65 -5.15 16 27 C -0.13 -4.50 8.88 22.39 0.20 -4.30 16 28 C -0.11 -3.25 9.69 22.25 0.22 -3.04 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.13 3.83 7.75 -2.91 -0.02 3.81 16 34 H 0.03 1.42 7.26 -2.39 -0.02 1.41 16 35 H 0.05 1.90 5.83 -2.39 -0.01 1.89 16 36 H 0.27 12.01 8.31 -92.70 -0.77 11.24 16 37 H 0.45 12.06 8.96 -92.71 -0.83 11.23 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.13 4.83 3.21 -2.38 -0.01 4.82 16 41 H 0.10 3.81 7.98 -2.91 -0.02 3.78 16 42 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -57.43 347.91 2.66 -54.77 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.24 Total: 31.93 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 5.18 Total: 23.67 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.58 Total: -88.18 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -0.20 Total: -60.41 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.22 kcal Total: -57.43 2.66 -54.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841387789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.049 kcal (2) G-P(sol) polarization free energy of solvation -57.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds