Wall clock time and date at job start Tue Mar 31 2020 13:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 C 1.52996 * 109.47154 * 120.00284 * 2 1 3 5 5 C 1.50700 * 109.47089 * 175.00048 * 4 2 1 6 6 N 1.29951 * 126.28994 * 89.97225 * 5 4 2 7 7 O 1.21297 * 110.25276 * 180.02562 * 6 5 4 8 8 C 1.33638 * 109.81456 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.55080 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47223 * 270.02014 * 9 8 7 11 11 C 1.35894 * 117.00094 * 180.02562 * 10 9 8 12 12 C 1.38835 * 120.02202 * 359.97438 * 11 10 9 13 13 C 1.38180 * 120.08160 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.12637 * 359.74227 * 13 12 11 15 15 C 1.38894 * 120.03614 * 0.51160 * 14 13 12 16 16 O 1.35752 * 120.03861 * 179.76456 * 15 14 13 17 17 C 1.34838 * 116.99794 * 174.18471 * 16 15 14 18 18 H 1.07996 * 119.99770 * 5.06444 * 17 16 15 19 19 C 1.38648 * 119.99604 * 185.05747 * 17 16 15 20 20 N 1.31554 * 120.00626 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46957 * 60.00021 * 21 19 17 23 23 H 1.48500 * 109.47058 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47185 * 300.00545 * 21 19 17 25 25 C 1.38566 * 120.02430 * 180.02562 * 11 10 9 26 26 N 1.31135 * 106.89678 * 0.22230 * 8 7 6 27 27 H 1.08991 * 109.47236 * 299.99427 * 1 2 3 28 28 H 1.08996 * 109.47228 * 59.99917 * 1 2 3 29 29 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46887 * 240.00661 * 2 1 3 31 31 H 1.09001 * 109.47860 * 300.00442 * 3 2 1 32 32 H 1.09003 * 109.46846 * 60.00636 * 3 2 1 33 33 H 1.09001 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47516 * 55.00517 * 4 2 1 35 35 H 1.08994 * 109.47457 * 294.99974 * 4 2 1 36 36 H 1.09009 * 109.47180 * 150.02386 * 9 8 7 37 37 H 1.09000 * 109.47353 * 30.02630 * 9 8 7 38 38 H 1.07998 * 119.95805 * 0.04167 * 12 11 10 39 39 H 1.07997 * 119.93999 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.98250 * 180.27801 * 14 13 12 41 41 H 0.97000 * 120.00366 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.05789 * 359.95164 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.3945 0.0345 1.6530 7 8 5.5288 -0.3429 1.4475 8 6 5.5070 -1.5189 0.8130 9 6 6.7028 -2.3249 0.3755 10 8 7.0785 -1.9396 -0.9483 11 6 8.1469 -2.5759 -1.4963 12 6 8.8202 -3.5515 -0.7734 13 6 9.9070 -4.1989 -1.3292 14 6 10.3239 -3.8816 -2.6076 15 6 9.6574 -2.9028 -3.3334 16 8 10.0699 -2.5876 -4.5877 17 6 9.3088 -1.7176 -5.2819 18 1 8.4625 -1.2428 -4.8078 19 6 9.6129 -1.4324 -6.6042 20 7 10.6436 -2.0109 -7.1818 21 14 8.5589 -0.2265 -7.5658 22 1 8.5880 1.0991 -6.8970 23 1 9.0898 -0.0967 -8.9465 24 1 7.1606 -0.7237 -7.6183 25 6 8.5658 -2.2509 -2.7765 26 7 4.2462 -1.8348 0.6390 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6055 -1.7199 1.2950 35 1 1.7517 -0.1585 2.1369 36 1 6.4503 -3.3853 0.3873 37 1 7.5335 -2.1417 1.0569 38 1 8.4939 -3.8048 0.2245 39 1 10.4293 -4.9571 -0.7647 40 1 11.1709 -4.3923 -3.0414 41 1 10.8560 -1.8116 -8.1070 42 1 8.0433 -1.4922 -3.3403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:51 Heat of formation + Delta-G solvation = 21.909680 kcal Electronic energy + Delta-G solvation = -25360.484713 eV Core-core repulsion = 21503.256063 eV Total energy + Delta-G solvation = -3857.228651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.81577 -39.81708 -38.28827 -37.48321 -35.90808 -35.39259 -33.08827 -32.30922 -30.05717 -28.76053 -28.46400 -27.82472 -27.42708 -25.40169 -23.92178 -22.32153 -21.95456 -21.12503 -20.44275 -18.65533 -18.19590 -17.83296 -17.48919 -16.15834 -15.82564 -15.81000 -15.38229 -15.22527 -14.69063 -14.51226 -14.40071 -14.19715 -13.65988 -13.24897 -13.03140 -12.97003 -12.60987 -12.56457 -12.44273 -12.27112 -12.12032 -11.84488 -11.68110 -11.34542 -11.31481 -11.26477 -11.09609 -11.05890 -11.03416 -10.70388 -10.48417 -10.45384 -10.12870 -9.52059 -8.88009 -7.84530 -7.35359 -6.50075 -4.09713 0.78698 1.90784 2.11939 2.22499 2.42644 3.12926 3.14061 3.16494 3.24634 3.63112 3.81704 3.94657 4.44451 4.46776 4.50634 4.60234 4.74111 4.89241 4.99153 5.04082 5.12932 5.19359 5.24896 5.31774 5.36090 5.43891 5.49355 5.54669 5.60275 5.64386 5.73354 5.81897 5.94923 6.00125 6.03549 6.14847 6.25373 6.56679 6.88468 7.01111 7.13554 7.33960 7.42794 7.85280 7.92384 7.95129 8.95349 9.61312 10.67177 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003002 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.096435 B = 9326.223271 C =11333.230262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.024 4.024 5 C 0.172 3.828 6 N -0.376 5.376 7 O 0.088 5.912 8 C 0.187 3.813 9 C 0.158 3.842 10 O -0.313 6.313 11 C 0.166 3.834 12 C -0.297 4.297 13 C -0.042 4.042 14 C -0.216 4.216 15 C 0.184 3.816 16 O -0.168 6.168 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.042 3.958 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.259 4.259 26 N -0.458 5.458 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 1.182 16.733 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.063 4.063 5 C -0.100 4.100 6 N -0.082 5.082 7 O 0.028 5.972 8 C -0.034 4.034 9 C 0.081 3.919 10 O -0.226 6.226 11 C 0.122 3.878 12 C -0.317 4.317 13 C -0.061 4.061 14 C -0.235 4.235 15 C 0.128 3.872 16 O -0.070 6.070 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.494 5.494 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.279 4.279 26 N -0.194 5.194 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.833 1.764 16.513 22.266 hybrid contribution -0.294 0.472 -0.350 0.657 sum -15.127 2.236 16.163 22.250 Atomic orbital electron populations 1.21804 0.93962 1.02152 1.02239 1.21115 0.96334 0.96596 0.97326 1.21887 1.01368 0.95454 1.02016 1.20131 0.82794 1.03239 1.00166 1.25861 1.00205 0.87269 0.96695 1.74661 0.89844 1.21916 1.21818 1.85319 1.24554 1.31667 1.55668 1.28205 0.95110 0.86109 0.94006 1.20673 0.89682 0.96103 0.85450 1.86027 1.47010 1.61564 1.28029 1.18525 0.85403 0.91605 0.92304 1.20610 1.03916 1.05712 1.01448 1.20402 0.94682 0.97153 0.93817 1.20203 1.04998 1.02526 0.95807 1.19016 0.90545 0.91218 0.86376 1.84007 1.46617 1.56078 1.20299 1.21340 1.11073 1.20723 0.93893 0.88846 1.25297 0.97060 0.98169 0.95752 1.70024 1.25525 1.40582 1.13270 0.85779 0.79391 0.79793 0.78530 1.19378 1.20181 1.19378 1.20305 1.03635 1.09053 0.94890 1.71917 1.01211 1.26655 1.19597 0.92421 0.92088 0.92257 0.90355 0.92251 0.92385 0.92791 0.88457 0.89005 0.87263 0.88145 0.86858 0.86481 0.86192 0.91821 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.82 2.91 -90.62 -0.26 -1.09 16 3 C -0.15 -1.41 9.00 37.16 0.33 -1.08 16 4 C -0.02 -0.22 5.32 -27.89 -0.15 -0.37 16 5 C 0.17 2.13 6.68 -156.36 -1.05 1.08 16 6 N -0.38 -5.00 11.46 30.90 0.35 -4.65 16 7 O 0.09 1.17 11.31 18.12 0.20 1.38 16 8 C 0.19 2.42 8.14 -13.06 -0.11 2.31 16 9 C 0.16 1.87 5.36 36.00 0.19 2.07 16 10 O -0.31 -5.21 10.12 -19.41 -0.20 -5.41 16 11 C 0.17 3.06 6.68 -39.24 -0.26 2.80 16 12 C -0.30 -4.76 9.04 -39.38 -0.36 -5.11 16 13 C -0.04 -0.70 10.03 -39.63 -0.40 -1.10 16 14 C -0.22 -4.37 9.99 -39.37 -0.39 -4.77 16 15 C 0.18 4.36 6.65 -39.13 -0.26 4.10 16 16 O -0.17 -4.70 9.76 0.02 0.00 -4.70 16 17 C -0.39 -10.95 9.49 30.88 0.29 -10.66 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 20 N -0.86 -24.89 13.67 55.48 0.76 -24.14 16 21 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.26 -5.70 9.10 -39.25 -0.36 -6.06 16 26 N -0.46 -6.26 11.55 -9.87 -0.11 -6.37 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.63 6.84 -51.93 -0.36 0.28 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.11 7.66 -51.92 -0.40 0.71 16 37 H 0.10 0.91 7.66 -51.93 -0.40 0.52 16 38 H 0.11 1.38 6.29 -52.49 -0.33 1.05 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 3.09 5.64 -52.49 -0.30 2.79 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -31.62 360.67 -6.52 -38.13 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.41 Total: 2.23 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.52 Total: -17.42 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 1.00 Total: -35.15 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.01 Total: -8.73 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.62 -6.52 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.043 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds