Wall clock time and date at job start Tue Mar 31 2020 13:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 C 1.52996 * 109.47154 * 120.00284 * 2 1 3 5 5 C 1.50700 * 109.47089 * 175.00048 * 4 2 1 6 6 N 1.29951 * 126.28994 * 89.97225 * 5 4 2 7 7 O 1.21297 * 110.25276 * 180.02562 * 6 5 4 8 8 C 1.33638 * 109.81456 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.55080 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47223 * 270.02014 * 9 8 7 11 11 C 1.35894 * 117.00094 * 180.02562 * 10 9 8 12 12 C 1.38835 * 120.02202 * 359.97438 * 11 10 9 13 13 C 1.38180 * 120.08160 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.12637 * 359.74227 * 13 12 11 15 15 C 1.38894 * 120.03614 * 0.51160 * 14 13 12 16 16 O 1.35752 * 120.03861 * 179.76456 * 15 14 13 17 17 C 1.34838 * 116.99794 * 174.18471 * 16 15 14 18 18 H 1.07996 * 119.99770 * 5.06444 * 17 16 15 19 19 C 1.38648 * 119.99604 * 185.05747 * 17 16 15 20 20 N 1.31554 * 120.00626 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46957 * 60.00021 * 21 19 17 23 23 H 1.48500 * 109.47058 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47185 * 300.00545 * 21 19 17 25 25 C 1.38566 * 120.02430 * 180.02562 * 11 10 9 26 26 N 1.31135 * 106.89678 * 0.22230 * 8 7 6 27 27 H 1.08991 * 109.47236 * 299.99427 * 1 2 3 28 28 H 1.08996 * 109.47228 * 59.99917 * 1 2 3 29 29 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46887 * 240.00661 * 2 1 3 31 31 H 1.09001 * 109.47860 * 300.00442 * 3 2 1 32 32 H 1.09003 * 109.46846 * 60.00636 * 3 2 1 33 33 H 1.09001 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47516 * 55.00517 * 4 2 1 35 35 H 1.08994 * 109.47457 * 294.99974 * 4 2 1 36 36 H 1.09009 * 109.47180 * 150.02386 * 9 8 7 37 37 H 1.09000 * 109.47353 * 30.02630 * 9 8 7 38 38 H 1.07998 * 119.95805 * 0.04167 * 12 11 10 39 39 H 1.07997 * 119.93999 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.98250 * 180.27801 * 14 13 12 41 41 H 0.97000 * 120.00366 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.05789 * 359.95164 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.3945 0.0345 1.6530 7 8 5.5288 -0.3429 1.4475 8 6 5.5070 -1.5189 0.8130 9 6 6.7028 -2.3249 0.3755 10 8 7.0785 -1.9396 -0.9483 11 6 8.1469 -2.5759 -1.4963 12 6 8.8202 -3.5515 -0.7734 13 6 9.9070 -4.1989 -1.3292 14 6 10.3239 -3.8816 -2.6076 15 6 9.6574 -2.9028 -3.3334 16 8 10.0699 -2.5876 -4.5877 17 6 9.3088 -1.7176 -5.2819 18 1 8.4625 -1.2428 -4.8078 19 6 9.6129 -1.4324 -6.6042 20 7 10.6436 -2.0109 -7.1818 21 14 8.5589 -0.2265 -7.5658 22 1 8.5880 1.0991 -6.8970 23 1 9.0898 -0.0967 -8.9465 24 1 7.1606 -0.7237 -7.6183 25 6 8.5658 -2.2509 -2.7765 26 7 4.2462 -1.8348 0.6390 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.6766 1.9565 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6055 -1.7199 1.2950 35 1 1.7517 -0.1585 2.1369 36 1 6.4503 -3.3853 0.3873 37 1 7.5335 -2.1417 1.0569 38 1 8.4939 -3.8048 0.2245 39 1 10.4293 -4.9571 -0.7647 40 1 11.1709 -4.3923 -3.0414 41 1 10.8560 -1.8116 -8.1070 42 1 8.0433 -1.4922 -3.3403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:50 Heat of formation + Delta-G solvation = 0.788484 kcal Electronic energy + Delta-G solvation = -25361.400597 eV Core-core repulsion = 21503.256063 eV Total energy + Delta-G solvation = -3858.144534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.79799 -41.28763 -39.91267 -38.27198 -37.43855 -36.34658 -34.31407 -34.04639 -31.48479 -30.34739 -29.26482 -28.90063 -28.09333 -27.35998 -24.90154 -23.61710 -23.37356 -22.41250 -21.20903 -20.10725 -19.70213 -19.12714 -18.61312 -17.44776 -17.30629 -16.89754 -16.79876 -16.37938 -16.06960 -15.69608 -15.51499 -15.39507 -15.20776 -14.66850 -14.34294 -14.11033 -13.86243 -13.60382 -13.47146 -13.22858 -13.13998 -13.04402 -12.86394 -12.71672 -12.62392 -12.31514 -12.24368 -12.14429 -12.03444 -11.93921 -11.85127 -11.72860 -11.39190 -11.08852 -10.80439 -9.41338 -8.97305 -8.50047 -6.18866 -0.22124 0.57687 0.67707 0.93236 1.32792 1.42924 1.45304 1.48354 2.15181 2.25996 2.60232 2.79671 2.89081 3.13542 3.50315 3.63549 3.79649 3.86588 3.92781 4.05457 4.10269 4.15989 4.30236 4.39070 4.45633 4.56323 4.56981 4.63541 4.69633 4.73858 4.79619 4.81655 4.89736 4.99182 5.03501 5.09161 5.16355 5.28525 5.36956 5.38216 5.62402 5.66439 5.88309 6.00668 6.43641 6.94714 6.94764 7.72313 8.72286 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003002 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.096435 B = 9326.223271 C =11333.230262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.025 4.025 5 C 0.172 3.828 6 N -0.391 5.391 7 O 0.080 5.920 8 C 0.185 3.815 9 C 0.151 3.849 10 O -0.333 6.333 11 C 0.171 3.829 12 C -0.265 4.265 13 C -0.025 4.025 14 C -0.232 4.232 15 C 0.148 3.852 16 O -0.222 6.222 17 C -0.416 4.416 18 H 0.096 0.904 19 C -0.016 4.016 20 N -0.915 5.915 21 Si 1.013 2.987 22 H -0.260 1.260 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.282 4.282 26 N -0.477 5.477 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.120 0.880 41 H 0.275 0.725 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 0.437 20.045 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.064 4.064 5 C -0.101 4.101 6 N -0.098 5.098 7 O 0.022 5.978 8 C -0.036 4.036 9 C 0.075 3.925 10 O -0.246 6.246 11 C 0.126 3.874 12 C -0.284 4.284 13 C -0.043 4.043 14 C -0.251 4.251 15 C 0.097 3.903 16 O -0.128 6.128 17 C -0.492 4.492 18 H 0.113 0.887 19 C -0.215 4.215 20 N -0.553 5.553 21 Si 0.832 3.168 22 H -0.184 1.184 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.302 4.302 26 N -0.213 5.213 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.780 1.007 19.894 26.045 hybrid contribution 0.195 0.592 -0.960 1.145 sum -16.585 1.599 18.934 25.221 Atomic orbital electron populations 1.21767 0.91878 1.02986 1.02975 1.21085 0.97968 0.95677 0.96390 1.21880 0.99517 0.96346 1.02836 1.20353 0.80739 1.04460 1.00823 1.26463 1.01487 0.86524 0.95610 1.74658 0.90026 1.22411 1.22750 1.85296 1.24707 1.31873 1.55958 1.28461 0.95402 0.86006 0.93750 1.21190 0.90541 0.97202 0.83569 1.85982 1.46166 1.61749 1.30717 1.18479 0.85863 0.91840 0.91226 1.21263 1.01719 1.02453 1.02985 1.20990 0.94230 0.97030 0.92074 1.20529 1.05154 1.02028 0.97430 1.19592 0.92093 0.92912 0.85712 1.83965 1.48363 1.57961 1.22523 1.21716 1.11518 1.21302 0.94703 0.88678 1.26490 0.98430 1.00102 0.96443 1.70150 1.27997 1.43322 1.13819 0.84737 0.77612 0.77306 0.77140 1.18433 1.19022 1.18490 1.20285 1.03791 1.09208 0.96922 1.71933 1.01785 1.27507 1.20109 0.91055 0.92004 0.91395 0.92493 0.91906 0.91133 0.95538 0.86960 0.87276 0.84666 0.84451 0.81226 0.81397 0.86236 0.91636 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.48 2.91 -10.79 -0.03 -1.51 16 3 C -0.15 -2.68 9.00 71.98 0.65 -2.03 16 4 C -0.03 -0.40 5.32 29.85 0.16 -0.24 16 5 C 0.17 4.00 6.68 138.46 0.93 4.93 16 6 N -0.39 -9.95 11.46 -60.31 -0.69 -10.65 16 7 O 0.08 2.01 11.31 74.89 0.85 2.86 16 8 C 0.18 4.38 8.14 88.38 0.72 5.10 16 9 C 0.15 2.96 5.36 71.23 0.38 3.35 16 10 O -0.33 -10.35 10.12 -92.36 -0.93 -11.29 16 11 C 0.17 5.95 6.68 22.49 0.15 6.10 16 12 C -0.27 -7.12 9.04 22.40 0.20 -6.92 16 13 C -0.03 -0.74 10.03 22.24 0.22 -0.51 16 14 C -0.23 -9.29 9.99 22.41 0.22 -9.07 16 15 C 0.15 7.33 6.65 22.56 0.15 7.48 16 16 O -0.22 -13.39 9.76 -22.84 -0.22 -13.61 16 17 C -0.42 -24.75 9.49 67.92 0.64 -24.11 16 18 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 19 C -0.02 -0.94 5.49 84.83 0.47 -0.47 16 20 N -0.92 -56.20 13.67 21.61 0.30 -55.90 16 21 Si 1.01 43.88 29.55 68.60 2.03 45.91 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.28 -12.80 9.10 22.48 0.20 -12.59 16 26 N -0.48 -12.22 11.55 -303.18 -3.50 -15.72 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.03 0.61 6.84 -2.39 -0.02 0.59 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.14 2.00 7.66 -2.38 -0.02 1.98 16 37 H 0.14 1.71 7.66 -2.39 -0.02 1.69 16 38 H 0.17 2.72 6.29 -2.91 -0.02 2.70 16 39 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.11 5.45 5.64 -2.91 -0.02 5.44 16 Total: -1.00 -76.47 360.67 4.59 -71.88 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.05 Total: 17.84 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.73 Total: -31.32 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.90 Total: -82.27 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.31 Total: -22.04 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.47 4.59 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.669 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds