Wall clock time and date at job start Tue Mar 31 2020 13:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.52997 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47586 * 180.02562 * 4 3 2 6 6 N 1.31134 * 126.55410 * 90.24294 * 5 4 3 7 7 C 1.34488 * 105.61534 * 180.12682 * 6 5 4 8 8 C 1.50707 * 126.28688 * 179.90431 * 7 6 5 9 9 O 1.42898 * 109.47020 * 269.71436 * 8 7 6 10 10 C 1.35896 * 116.99435 * 179.97438 * 9 8 7 11 11 C 1.38827 * 120.02371 * 0.02562 * 10 9 8 12 12 C 1.38189 * 120.07970 * 179.74213 * 11 10 9 13 13 C 1.38150 * 120.12814 * 0.26171 * 12 11 10 14 14 C 1.38896 * 120.03743 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.04371 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00669 * 174.46733 * 15 14 13 17 17 H 1.07999 * 119.99389 * 5.06001 * 16 15 14 18 18 C 1.38644 * 120.00140 * 185.06143 * 16 15 14 19 19 N 1.31562 * 119.99922 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00328 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46747 * 90.00001 * 20 18 16 22 22 H 1.48493 * 109.47150 * 210.00100 * 20 18 16 23 23 H 1.48497 * 109.46595 * 330.00088 * 20 18 16 24 24 C 1.38580 * 120.01785 * 180.25709 * 10 9 8 25 25 N 1.29947 * 107.42703 * 359.64601 * 7 6 5 26 26 O 1.21301 * 110.24988 * 0.22517 * 25 7 6 27 27 H 1.08992 * 109.47549 * 59.99860 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46658 * 299.99674 * 1 2 3 30 30 H 1.09006 * 109.47385 * 240.00226 * 2 1 3 31 31 H 1.09004 * 109.47567 * 119.99729 * 2 1 3 32 32 H 1.08994 * 109.47140 * 60.00021 * 3 2 1 33 33 H 1.09001 * 109.47157 * 300.00232 * 3 2 1 34 34 H 1.09001 * 109.47545 * 59.99519 * 4 3 2 35 35 H 1.09001 * 109.46914 * 300.00049 * 4 3 2 36 36 H 1.09004 * 109.46628 * 149.71620 * 8 7 6 37 37 H 1.08997 * 109.46892 * 29.71764 * 8 7 6 38 38 H 1.07992 * 119.95806 * 0.02689 * 11 10 9 39 39 H 1.08004 * 119.93592 * 180.27629 * 12 11 10 40 40 H 1.07994 * 119.98454 * 180.02562 * 13 12 11 41 41 H 0.96997 * 120.00107 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.06310 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3374 3.5976 1.0537 7 6 4.7513 4.7837 0.5736 8 6 5.1743 5.9778 1.3900 9 8 4.0379 6.8047 1.6486 10 6 4.2483 7.9313 2.3789 11 6 5.5233 8.2344 2.8367 12 6 5.7395 9.3824 3.5749 13 6 4.6870 10.2292 3.8643 14 6 3.4083 9.9284 3.4130 15 8 2.3741 10.7607 3.6968 16 6 1.1835 10.4718 3.1337 17 1 1.0646 9.5667 2.5566 18 6 0.1120 11.3366 3.2957 19 7 -1.0499 11.0545 2.7467 20 14 0.3175 12.9018 4.2945 21 1 0.7530 14.0053 3.4013 22 1 -0.9775 13.2589 4.9273 23 1 1.3406 12.6853 5.3488 24 6 3.1891 8.7758 2.6711 25 7 4.7248 4.7092 -0.7234 26 8 4.3376 3.6142 -1.0733 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 5.9212 6.5487 0.8384 37 1 5.6001 5.6396 2.3346 38 1 6.3481 7.5745 2.6118 39 1 6.7332 9.6182 3.9262 40 1 4.8586 11.1259 4.4410 41 1 -1.7996 11.6593 2.8603 42 1 2.1958 8.5396 2.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:27 Heat of formation + Delta-G solvation = 19.145122 kcal Electronic energy + Delta-G solvation = -24994.479202 eV Core-core repulsion = 21137.130671 eV Total energy + Delta-G solvation = -3857.348531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.84009 -39.82177 -38.39898 -36.77512 -36.19623 -35.54812 -33.33732 -32.39356 -30.46898 -29.94676 -28.96301 -27.91820 -25.35191 -25.30258 -23.71194 -22.02648 -21.98081 -21.54133 -20.77211 -18.55569 -18.10918 -17.99438 -17.60317 -16.06154 -15.93448 -15.86276 -15.56286 -15.34060 -14.99296 -14.41149 -14.36159 -13.85603 -13.82279 -13.56198 -13.34981 -12.93597 -12.77425 -12.55873 -12.28331 -12.19092 -12.05525 -11.91606 -11.74019 -11.66232 -11.44931 -11.24316 -11.13010 -11.00561 -10.98136 -10.64393 -10.45746 -10.27554 -10.13480 -9.48930 -8.89765 -7.85902 -7.45403 -6.43616 -4.11479 0.89776 1.82404 2.07351 2.15995 2.53942 3.12321 3.21299 3.24874 3.39045 3.62652 3.97329 4.21950 4.37508 4.41523 4.47544 4.48493 4.77652 4.80556 4.85650 4.95186 5.06928 5.09099 5.13934 5.22353 5.36768 5.40257 5.40984 5.51196 5.54698 5.61597 5.73848 5.76024 5.83643 5.93672 5.94285 6.13033 6.20590 6.50445 6.86458 7.04483 7.06373 7.34131 7.75175 7.83096 7.93795 8.01284 8.90569 9.50021 10.63657 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.002637 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.614769 B =10615.498660 C =12399.956450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.025 4.025 5 C 0.178 3.822 6 N -0.465 5.465 7 C 0.172 3.828 8 C 0.157 3.843 9 O -0.312 6.312 10 C 0.166 3.834 11 C -0.290 4.290 12 C -0.043 4.043 13 C -0.218 4.218 14 C 0.191 3.809 15 O -0.208 6.208 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.876 5.876 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.249 4.249 25 N -0.361 5.361 26 O 0.086 5.914 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.508 -20.358 -5.180 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.064 4.064 5 C -0.042 4.042 6 N -0.198 5.198 7 C -0.101 4.101 8 C 0.080 3.920 9 O -0.225 6.225 10 C 0.122 3.878 11 C -0.309 4.309 12 C -0.062 4.062 13 C -0.238 4.238 14 C 0.137 3.863 15 O -0.113 6.113 16 C -0.467 4.467 17 H 0.126 0.874 18 C -0.139 4.139 19 N -0.513 5.513 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.269 4.269 25 N -0.067 5.067 26 O 0.023 5.977 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.342 -19.337 -5.206 22.539 hybrid contribution -0.011 0.475 0.239 0.532 sum 10.332 -18.863 -4.967 22.073 Atomic orbital electron populations 1.21776 0.95358 1.01827 1.02329 1.21488 0.96435 0.95487 1.02418 1.21694 0.92006 0.98415 1.03963 1.20312 0.96960 0.83118 1.06011 1.28878 0.96345 0.98446 0.80569 1.71887 1.16844 1.02314 1.28805 1.25290 1.01420 0.95298 0.88045 1.20479 0.88063 0.85467 0.97965 1.86048 1.33660 1.33441 1.69314 1.18588 0.93733 0.84768 0.90709 1.20690 0.95279 1.03000 1.11969 1.20400 0.97554 0.92733 0.95464 1.20172 0.90411 1.03247 1.09925 1.18738 0.87865 0.88459 0.91200 1.83595 1.17375 1.47298 1.63000 1.20819 0.83881 1.09743 1.32285 0.87437 1.24485 0.93798 0.98836 0.96774 1.69652 1.01215 1.37984 1.42435 0.86177 0.78005 0.81907 0.80805 1.19792 1.20696 1.18260 1.20420 0.99376 0.97058 1.10010 1.74682 1.16886 0.99519 1.15584 1.85311 1.59122 1.17397 1.35853 0.92524 0.92546 0.92420 0.91574 0.91514 0.90577 0.90910 0.87877 0.87096 0.89219 0.88738 0.86808 0.86351 0.86200 0.90952 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.12 -0.78 5.20 -26.73 -0.14 -0.92 16 4 C -0.03 -0.15 5.84 -27.89 -0.16 -0.31 16 5 C 0.18 1.91 7.77 -13.06 -0.10 1.81 16 6 N -0.46 -6.42 11.55 -9.87 -0.11 -6.53 16 7 C 0.17 2.58 7.85 -156.37 -1.23 1.35 16 8 C 0.16 2.30 5.36 36.01 0.19 2.49 16 9 O -0.31 -5.93 10.12 -19.41 -0.20 -6.13 16 10 C 0.17 3.33 6.68 -39.24 -0.26 3.07 16 11 C -0.29 -4.95 9.04 -39.38 -0.36 -5.31 16 12 C -0.04 -0.73 10.03 -39.63 -0.40 -1.13 16 13 C -0.22 -4.33 9.99 -39.37 -0.39 -4.72 16 14 C 0.19 4.50 6.65 -39.13 -0.26 4.24 16 15 O -0.21 -5.56 8.58 0.04 0.00 -5.55 16 16 C -0.39 -11.24 9.95 30.88 0.31 -10.94 16 17 H 0.11 3.20 5.43 -52.49 -0.29 2.92 16 18 C 0.06 1.84 5.49 -17.52 -0.10 1.74 16 19 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 20 Si 0.91 21.70 28.62 -169.99 -4.86 16.83 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.25 -5.76 9.10 -39.25 -0.36 -6.12 16 25 N -0.36 -5.37 12.16 30.90 0.38 -4.99 16 26 O 0.09 1.06 11.31 18.10 0.20 1.27 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 37 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 38 H 0.11 1.56 6.29 -52.49 -0.33 1.23 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.14 3.52 5.64 -52.49 -0.30 3.22 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -32.72 362.80 -6.89 -39.61 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.49 Total: 0.84 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.04 Total: -16.01 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 1.04 Total: -36.32 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.01 Total: -10.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.72 -6.89 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.750 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds