Wall clock time and date at job start Tue Mar 31 2020 13:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 C 1.52997 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47586 * 180.02562 * 4 3 2 6 6 N 1.31134 * 126.55410 * 90.24294 * 5 4 3 7 7 C 1.34488 * 105.61534 * 180.12682 * 6 5 4 8 8 C 1.50707 * 126.28688 * 179.90431 * 7 6 5 9 9 O 1.42898 * 109.47020 * 269.71436 * 8 7 6 10 10 C 1.35896 * 116.99435 * 179.97438 * 9 8 7 11 11 C 1.38827 * 120.02371 * 0.02562 * 10 9 8 12 12 C 1.38189 * 120.07970 * 179.74213 * 11 10 9 13 13 C 1.38150 * 120.12814 * 0.26171 * 12 11 10 14 14 C 1.38896 * 120.03743 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.04371 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00669 * 174.46733 * 15 14 13 17 17 H 1.07999 * 119.99389 * 5.06001 * 16 15 14 18 18 C 1.38644 * 120.00140 * 185.06143 * 16 15 14 19 19 N 1.31562 * 119.99922 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00328 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46747 * 90.00001 * 20 18 16 22 22 H 1.48493 * 109.47150 * 210.00100 * 20 18 16 23 23 H 1.48497 * 109.46595 * 330.00088 * 20 18 16 24 24 C 1.38580 * 120.01785 * 180.25709 * 10 9 8 25 25 N 1.29947 * 107.42703 * 359.64601 * 7 6 5 26 26 O 1.21301 * 110.24988 * 0.22517 * 25 7 6 27 27 H 1.08992 * 109.47549 * 59.99860 * 1 2 3 28 28 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46658 * 299.99674 * 1 2 3 30 30 H 1.09006 * 109.47385 * 240.00226 * 2 1 3 31 31 H 1.09004 * 109.47567 * 119.99729 * 2 1 3 32 32 H 1.08994 * 109.47140 * 60.00021 * 3 2 1 33 33 H 1.09001 * 109.47157 * 300.00232 * 3 2 1 34 34 H 1.09001 * 109.47545 * 59.99519 * 4 3 2 35 35 H 1.09001 * 109.46914 * 300.00049 * 4 3 2 36 36 H 1.09004 * 109.46628 * 149.71620 * 8 7 6 37 37 H 1.08997 * 109.46892 * 29.71764 * 8 7 6 38 38 H 1.07992 * 119.95806 * 0.02689 * 11 10 9 39 39 H 1.08004 * 119.93592 * 180.27629 * 12 11 10 40 40 H 1.07994 * 119.98454 * 180.02562 * 13 12 11 41 41 H 0.96997 * 120.00107 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.06310 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3374 3.5976 1.0537 7 6 4.7513 4.7837 0.5736 8 6 5.1743 5.9778 1.3900 9 8 4.0379 6.8047 1.6486 10 6 4.2483 7.9313 2.3789 11 6 5.5233 8.2344 2.8367 12 6 5.7395 9.3824 3.5749 13 6 4.6870 10.2292 3.8643 14 6 3.4083 9.9284 3.4130 15 8 2.3741 10.7607 3.6968 16 6 1.1835 10.4718 3.1337 17 1 1.0646 9.5667 2.5566 18 6 0.1120 11.3366 3.2957 19 7 -1.0499 11.0545 2.7467 20 14 0.3175 12.9018 4.2945 21 1 0.7530 14.0053 3.4013 22 1 -0.9775 13.2589 4.9273 23 1 1.3406 12.6853 5.3488 24 6 3.1891 8.7758 2.6711 25 7 4.7248 4.7092 -0.7234 26 8 4.3376 3.6142 -1.0733 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 5.9212 6.5487 0.8384 37 1 5.6001 5.6396 2.3346 38 1 6.3481 7.5745 2.6118 39 1 6.7332 9.6182 3.9262 40 1 4.8586 11.1259 4.4410 41 1 -1.7996 11.6593 2.8603 42 1 2.1958 8.5396 2.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:26 Heat of formation + Delta-G solvation = -2.732219 kcal Electronic energy + Delta-G solvation = -24995.427874 eV Core-core repulsion = 21137.130671 eV Total energy + Delta-G solvation = -3858.297203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.86911 -41.40111 -40.08227 -37.70856 -37.37959 -36.65477 -34.49721 -34.17675 -31.73672 -30.87312 -30.58917 -29.18367 -27.31976 -26.04057 -24.74124 -23.62860 -23.17074 -22.22313 -21.89915 -20.00316 -19.96996 -19.24840 -18.72831 -17.58313 -17.21764 -16.98293 -16.89957 -16.49828 -16.21089 -15.83924 -15.66081 -15.34512 -14.91365 -14.85237 -14.47427 -14.23023 -14.04658 -13.83852 -13.70585 -13.36538 -13.29065 -13.01359 -12.77960 -12.72635 -12.42848 -12.33942 -12.21015 -12.12028 -12.07122 -11.91271 -11.89316 -11.49994 -11.44563 -11.10672 -10.93748 -9.52012 -9.09481 -8.54444 -6.29937 -0.07436 0.48539 0.55715 0.76307 1.30001 1.35381 1.51592 1.70624 2.01869 2.25798 2.61394 2.70109 2.81173 2.98822 3.09537 3.61987 3.82275 3.89785 3.98004 4.01954 4.12642 4.15209 4.24235 4.36218 4.43192 4.46436 4.50647 4.68237 4.68710 4.69488 4.76072 4.87310 4.93871 5.01356 5.08303 5.27598 5.30193 5.31808 5.38167 5.49383 5.51902 5.67919 5.74405 6.00100 6.37062 6.78255 6.95044 7.47982 8.57499 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.002637 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.614769 B =10615.498660 C =12399.956450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C -0.121 4.121 4 C -0.022 4.022 5 C 0.194 3.806 6 N -0.493 5.493 7 C 0.154 3.846 8 C 0.151 3.849 9 O -0.338 6.338 10 C 0.162 3.838 11 C -0.263 4.263 12 C -0.025 4.025 13 C -0.219 4.219 14 C 0.157 3.843 15 O -0.233 6.233 16 C -0.406 4.406 17 H 0.072 0.928 18 C 0.010 3.990 19 N -0.923 5.923 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.279 4.279 25 N -0.383 5.383 26 O 0.090 5.910 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.139 0.861 41 H 0.287 0.713 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 -21.503 -4.604 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.160 4.160 4 C -0.060 4.060 5 C -0.026 4.026 6 N -0.227 5.227 7 C -0.119 4.119 8 C 0.075 3.925 9 O -0.251 6.251 10 C 0.117 3.883 11 C -0.282 4.282 12 C -0.042 4.042 13 C -0.238 4.238 14 C 0.107 3.893 15 O -0.140 6.140 16 C -0.482 4.482 17 H 0.090 0.910 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.182 1.182 24 C -0.299 4.299 25 N -0.089 5.089 26 O 0.026 5.974 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.179 0.821 39 H 0.193 0.807 40 H 0.157 0.843 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.128 -20.524 -4.636 25.344 hybrid contribution -0.936 0.488 -0.062 1.057 sum 13.192 -20.037 -4.698 24.445 Atomic orbital electron populations 1.21821 0.96328 1.02181 1.01449 1.21465 0.95525 0.94332 1.03866 1.21664 0.92454 0.99389 1.02447 1.20678 0.96197 0.80452 1.08684 1.29811 0.94069 0.99341 0.79379 1.71888 1.18213 1.02513 1.30037 1.25457 1.02234 0.95911 0.88283 1.20838 0.87001 0.85148 0.99471 1.86010 1.36540 1.33521 1.69065 1.18641 0.94092 0.84718 0.90854 1.21275 0.94789 1.03126 1.08985 1.21051 0.98965 0.91028 0.93193 1.20590 0.89180 1.04588 1.09429 1.19338 0.88853 0.88530 0.92575 1.83532 1.17134 1.48674 1.64623 1.20669 0.85611 1.09110 1.32775 0.91032 1.25394 0.93194 1.02308 0.97983 1.69747 1.02201 1.39763 1.44624 0.85130 0.78474 0.77416 0.79136 1.18773 1.19007 1.18182 1.20353 0.98989 0.98812 1.11744 1.74655 1.17751 1.00734 1.15799 1.85274 1.58949 1.16985 1.36180 0.93015 0.91559 0.93781 0.89568 0.90538 0.93070 0.91613 0.84239 0.85304 0.87077 0.86421 0.82088 0.80717 0.84268 0.90381 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.11 -0.90 5.93 30.59 0.18 -0.72 16 3 C -0.12 -1.43 5.20 30.59 0.16 -1.27 16 4 C -0.02 -0.20 5.84 29.85 0.17 -0.03 16 5 C 0.19 3.91 7.77 88.38 0.69 4.60 16 6 N -0.49 -13.25 11.55 -303.19 -3.50 -16.76 16 7 C 0.15 4.50 7.85 138.47 1.09 5.58 16 8 C 0.15 4.16 5.36 71.24 0.38 4.54 16 9 O -0.34 -12.96 10.12 -92.38 -0.93 -13.89 16 10 C 0.16 6.42 6.68 22.49 0.15 6.57 16 11 C -0.26 -7.89 9.04 22.40 0.20 -7.69 16 12 C -0.02 -0.71 10.03 22.24 0.22 -0.49 16 13 C -0.22 -8.20 9.99 22.41 0.22 -7.97 16 14 C 0.16 7.64 6.65 22.56 0.15 7.79 16 15 O -0.23 -13.01 8.58 -22.79 -0.20 -13.21 16 16 C -0.41 -25.03 9.95 67.92 0.68 -24.36 16 17 H 0.07 4.77 5.43 -2.91 -0.02 4.76 16 18 C 0.01 0.58 5.49 84.83 0.47 1.05 16 19 N -0.92 -56.99 13.96 21.61 0.30 -56.69 16 20 Si 0.98 46.04 28.62 68.60 1.96 48.01 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 C -0.28 -13.69 9.10 22.49 0.20 -13.49 16 25 N -0.38 -11.23 12.16 -60.31 -0.73 -11.96 16 26 O 0.09 2.14 11.31 74.82 0.85 2.98 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 2.52 7.66 -2.38 -0.02 2.50 16 37 H 0.12 2.63 7.66 -2.39 -0.02 2.61 16 38 H 0.16 3.37 6.29 -2.91 -0.02 3.36 16 39 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.29 16.09 8.31 -92.71 -0.77 15.31 16 42 H 0.10 5.65 5.64 -2.91 -0.02 5.63 16 Total: -1.00 -78.84 362.80 4.47 -74.37 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.04 Total: 14.06 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 5.68 Total: -26.93 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.93 Total: -85.40 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.28 Total: -24.12 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.96 Total: 48.01 kcal Total: -78.84 4.47 -74.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.641 kcal (2) G-P(sol) polarization free energy of solvation -78.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds