Wall clock time and date at job start Tue Mar 31 2020 11:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00422 * 3 2 1 5 5 H 1.48504 * 109.47175 * 30.00169 * 3 2 1 6 6 H 1.48497 * 109.47129 * 150.00149 * 3 2 1 7 7 C 1.38949 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00122 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00068 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00089 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46832 * 179.97438 * 12 10 9 14 14 C 1.34714 * 116.99651 * 180.02562 * 13 12 10 15 15 O 1.21473 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.47744 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.39663 * 120.11239 * 359.97438 * 16 14 13 18 18 C 1.37968 * 119.99918 * 180.02562 * 17 16 14 19 19 C 1.38257 * 120.23143 * 359.97438 * 18 17 16 20 20 C 1.38988 * 120.23370 * 359.97438 * 19 18 17 21 21 N 1.39704 * 120.00475 * 180.02562 * 20 19 18 22 22 C 1.47909 * 111.00295 * 54.23397 * 21 20 19 23 23 C 1.53997 * 107.06029 * 214.15843 * 22 21 20 24 24 C 1.54598 * 105.13805 * 1.22581 * 23 22 21 25 25 C 1.48536 * 110.99811 * 296.83818 * 21 20 19 26 26 C 1.38669 * 119.99513 * 0.29150 * 20 19 18 27 27 H 0.96990 * 120.00289 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.46891 * 60.00433 * 12 10 9 30 30 H 1.08995 * 109.47110 * 300.00124 * 12 10 9 31 31 H 1.07999 * 120.00140 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.88806 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.88441 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.91437 * 94.80329 * 22 21 20 35 35 H 1.09000 * 109.91379 * 333.50873 * 22 21 20 36 36 H 1.08998 * 110.30650 * 120.13521 * 23 22 21 37 37 H 1.08991 * 110.30667 * 242.30732 * 23 22 21 38 38 H 1.08995 * 110.72596 * 140.32002 * 24 23 22 39 39 H 1.09006 * 110.71863 * 263.60275 * 24 23 22 40 40 H 1.09002 * 110.66596 * 41.28904 * 25 21 20 41 41 H 1.08998 * 110.66714 * 278.15181 * 25 21 20 42 42 H 1.07993 * 120.11437 * 179.72879 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 8 2.1875 -5.9665 -0.0039 14 6 1.6726 -7.2114 -0.0051 15 8 0.4683 -7.3706 -0.0043 16 6 2.5726 -8.3831 -0.0063 17 6 3.9575 -8.2028 -0.0067 18 6 4.7958 -9.2986 -0.0084 19 6 4.2700 -10.5773 -0.0091 20 6 2.8933 -10.7679 -0.0077 21 7 2.3672 -12.0620 -0.0079 22 6 2.9164 -12.8578 1.1114 23 6 3.0399 -14.3104 0.6151 24 6 2.5590 -14.2774 -0.8538 25 6 2.7453 -12.7901 -1.2462 26 6 2.0419 -9.6733 -0.0116 27 1 -0.4850 0.8399 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6169 -4.9201 -0.8920 30 1 0.6175 -4.9213 0.8880 31 1 4.3723 -7.2056 -0.0057 32 1 5.8665 -9.1571 -0.0083 33 1 4.9314 -11.4311 -0.0100 34 1 2.2405 -12.8133 1.9653 35 1 3.8984 -12.4764 1.3913 36 1 4.0774 -14.6407 0.6661 37 1 2.4031 -14.9677 1.2070 38 1 3.1792 -14.9214 -1.4773 39 1 1.5101 -14.5660 -0.9228 40 1 3.7838 -12.5888 -1.5089 41 1 2.0807 -12.5228 -2.0677 42 1 0.9719 -9.8192 -0.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850247502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:10 Heat of formation + Delta-G solvation = -83.014527 kcal Electronic energy + Delta-G solvation = -25148.874224 eV Core-core repulsion = 21287.095718 eV Total energy + Delta-G solvation = -3861.778506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78704 -40.00159 -38.25801 -37.71176 -36.04317 -33.99665 -33.05188 -31.52493 -31.34875 -29.31121 -29.04632 -28.16407 -25.02212 -24.14130 -22.92245 -21.77913 -21.32280 -20.31017 -19.57250 -18.19147 -18.06361 -16.98722 -16.59532 -16.27840 -16.15595 -15.99480 -15.44736 -14.97327 -14.55753 -14.49981 -14.15202 -14.08432 -13.90932 -13.56252 -13.23314 -13.00997 -12.57755 -12.48763 -12.15689 -12.11595 -11.93224 -11.78811 -11.61863 -11.60774 -11.50910 -11.13129 -11.01881 -10.47520 -10.43987 -10.40151 -10.28740 -9.60176 -9.26591 -9.06834 -8.86623 -8.52050 -8.07885 -6.49454 -3.91535 0.51896 1.07519 2.50810 2.64574 3.13630 3.23772 3.29765 3.52083 3.55376 3.74564 4.11629 4.20186 4.36486 4.51058 4.51314 4.64595 4.77371 4.84100 5.00038 5.05493 5.06795 5.10800 5.15703 5.28087 5.35623 5.36374 5.39694 5.54557 5.56151 5.60848 5.68515 5.71110 5.73487 6.04041 6.09966 6.12539 6.17436 6.33532 6.39059 6.60309 7.02934 7.48232 7.84051 7.96534 8.48914 9.07435 9.39820 9.89605 10.67768 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.002027 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.483439 B =13811.758482 C =14244.996408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.321 6.321 14 C 0.505 3.495 15 O -0.508 6.508 16 C -0.112 4.112 17 C -0.059 4.059 18 C -0.123 4.123 19 C -0.119 4.119 20 C 0.063 3.937 21 N -0.481 5.481 22 C 0.035 3.965 23 C -0.132 4.132 24 C -0.124 4.124 25 C 0.037 3.963 26 C -0.031 4.031 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -26.788 -0.295 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.349 3.651 15 O -0.398 6.398 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.031 4.031 21 N -0.203 5.203 22 C -0.091 4.091 23 C -0.170 4.170 24 C -0.162 4.162 25 C -0.089 4.089 26 C -0.050 4.050 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.105 -26.582 -0.239 27.068 hybrid contribution 0.438 0.867 -0.033 0.972 sum 5.543 -25.714 -0.272 26.306 Atomic orbital electron populations 1.69613 1.05991 1.28488 1.49634 1.25318 0.95697 0.99878 0.96909 0.85790 0.79214 0.80415 0.78480 1.20275 1.20818 1.19294 1.19723 0.93474 0.81746 1.48191 0.87608 1.41702 1.09395 1.04075 1.63795 1.19303 0.88322 0.84051 0.85950 1.90555 1.13405 1.86804 1.55312 1.22776 0.90823 0.84363 1.03662 1.86580 1.40017 1.13841 1.83056 1.21160 0.87104 0.83758 0.73083 1.90825 1.15997 1.86948 1.46074 1.19066 0.93137 0.90925 1.08236 1.21713 0.91955 1.00674 0.93334 1.21049 1.00350 0.91702 1.01036 1.21856 0.95397 0.97942 0.98691 1.18752 0.90863 0.90701 1.02819 1.62363 1.55241 0.99444 1.03248 1.23036 0.99119 0.92518 0.94425 1.22420 1.01630 0.96250 0.96694 1.22502 1.02335 0.95556 0.95800 1.23381 0.99846 0.93049 0.92593 1.21069 1.01026 0.88998 0.93873 0.91624 0.77126 0.89400 0.89389 0.83468 0.84954 0.85784 0.89833 0.92922 0.91340 0.90689 0.90768 0.90426 0.93080 0.89512 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 10 C 0.44 10.63 7.86 -10.99 -0.09 10.54 16 11 O -0.58 -15.97 16.08 -14.12 -0.23 -16.19 16 12 C 0.06 1.19 5.95 36.01 0.21 1.40 16 13 O -0.32 -6.12 9.00 -47.21 -0.42 -6.54 16 14 C 0.50 8.59 7.90 34.62 0.27 8.87 16 15 O -0.51 -9.41 16.13 -19.24 -0.31 -9.72 16 16 C -0.11 -1.57 5.87 -105.01 -0.62 -2.18 16 17 C -0.06 -0.73 9.61 -39.15 -0.38 -1.10 16 18 C -0.12 -1.20 10.02 -39.67 -0.40 -1.60 16 19 C -0.12 -1.09 7.90 -39.30 -0.31 -1.40 16 20 C 0.06 0.66 4.86 -83.83 -0.41 0.26 16 21 N -0.48 -4.49 5.27 -167.19 -0.88 -5.37 16 22 C 0.04 0.27 6.48 -2.75 -0.02 0.25 16 23 C -0.13 -0.73 6.93 -25.37 -0.18 -0.90 16 24 C -0.12 -0.70 7.06 -24.87 -0.18 -0.88 16 25 C 0.04 0.28 6.43 -1.89 -0.01 0.27 16 26 C -0.03 -0.39 9.52 -38.95 -0.37 -0.76 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.88 7.02 -52.49 -0.37 0.51 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.38 6.29 -51.93 -0.33 0.05 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.36 7.02 -51.93 -0.36 0.00 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -32.24 359.40 -8.98 -41.22 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.50 Total: 8.13 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.70 Total: 4.81 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.22 Total: -42.84 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.96 Total: -32.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.24 -8.98 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850247502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.791 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds