Wall clock time and date at job start Tue Mar 31 2020 11:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00422 * 3 2 1 5 5 H 1.48504 * 109.47175 * 30.00169 * 3 2 1 6 6 H 1.48497 * 109.47129 * 150.00149 * 3 2 1 7 7 C 1.38949 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00122 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00068 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00089 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46832 * 179.97438 * 12 10 9 14 14 C 1.34714 * 116.99651 * 180.02562 * 13 12 10 15 15 O 1.21473 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.47744 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.39663 * 120.11239 * 359.97438 * 16 14 13 18 18 C 1.37968 * 119.99918 * 180.02562 * 17 16 14 19 19 C 1.38257 * 120.23143 * 359.97438 * 18 17 16 20 20 C 1.38988 * 120.23370 * 359.97438 * 19 18 17 21 21 N 1.39704 * 120.00475 * 180.02562 * 20 19 18 22 22 C 1.47909 * 111.00295 * 54.23397 * 21 20 19 23 23 C 1.53997 * 107.06029 * 214.15843 * 22 21 20 24 24 C 1.54598 * 105.13805 * 1.22581 * 23 22 21 25 25 C 1.48536 * 110.99811 * 296.83818 * 21 20 19 26 26 C 1.38669 * 119.99513 * 0.29150 * 20 19 18 27 27 H 0.96990 * 120.00289 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.46891 * 60.00433 * 12 10 9 30 30 H 1.08995 * 109.47110 * 300.00124 * 12 10 9 31 31 H 1.07999 * 120.00140 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.88806 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.88441 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.91437 * 94.80329 * 22 21 20 35 35 H 1.09000 * 109.91379 * 333.50873 * 22 21 20 36 36 H 1.08998 * 110.30650 * 120.13521 * 23 22 21 37 37 H 1.08991 * 110.30667 * 242.30732 * 23 22 21 38 38 H 1.08995 * 110.72596 * 140.32002 * 24 23 22 39 39 H 1.09006 * 110.71863 * 263.60275 * 24 23 22 40 40 H 1.09002 * 110.66596 * 41.28904 * 25 21 20 41 41 H 1.08998 * 110.66714 * 278.15181 * 25 21 20 42 42 H 1.07993 * 120.11437 * 179.72879 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 8 2.1875 -5.9665 -0.0039 14 6 1.6726 -7.2114 -0.0051 15 8 0.4683 -7.3706 -0.0043 16 6 2.5726 -8.3831 -0.0063 17 6 3.9575 -8.2028 -0.0067 18 6 4.7958 -9.2986 -0.0084 19 6 4.2700 -10.5773 -0.0091 20 6 2.8933 -10.7679 -0.0077 21 7 2.3672 -12.0620 -0.0079 22 6 2.9164 -12.8578 1.1114 23 6 3.0399 -14.3104 0.6151 24 6 2.5590 -14.2774 -0.8538 25 6 2.7453 -12.7901 -1.2462 26 6 2.0419 -9.6733 -0.0116 27 1 -0.4850 0.8399 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6169 -4.9201 -0.8920 30 1 0.6175 -4.9213 0.8880 31 1 4.3723 -7.2056 -0.0057 32 1 5.8665 -9.1571 -0.0083 33 1 4.9314 -11.4311 -0.0100 34 1 2.2405 -12.8133 1.9653 35 1 3.8984 -12.4764 1.3913 36 1 4.0774 -14.6407 0.6661 37 1 2.4031 -14.9677 1.2070 38 1 3.1792 -14.9214 -1.4773 39 1 1.5101 -14.5660 -0.9228 40 1 3.7838 -12.5888 -1.5089 41 1 2.0807 -12.5228 -2.0677 42 1 0.9719 -9.8192 -0.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850247502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:09 Heat of formation + Delta-G solvation = -102.553992 kcal Electronic energy + Delta-G solvation = -25149.721519 eV Core-core repulsion = 21287.095718 eV Total energy + Delta-G solvation = -3862.625800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89731 -41.05911 -40.04825 -38.63638 -37.52517 -36.04713 -33.75628 -33.42739 -32.43666 -30.28526 -29.83201 -29.36461 -26.77601 -25.40995 -23.72577 -22.68731 -21.81370 -21.49454 -21.30985 -20.09189 -19.23413 -18.28779 -17.80454 -17.76731 -17.17454 -16.92862 -16.81929 -16.37652 -15.84497 -15.79615 -15.72597 -15.09971 -14.94166 -14.67817 -14.31374 -14.01961 -13.84644 -13.68780 -13.56639 -13.18310 -13.04942 -12.94122 -12.85894 -12.48541 -12.43623 -12.23982 -12.12353 -12.08093 -11.93102 -11.79712 -11.58880 -11.44222 -10.53855 -10.17235 -10.13212 -9.86972 -9.57526 -8.53211 -6.04113 -0.47890 0.19915 1.25163 1.32888 1.35865 1.43711 1.56906 1.84997 2.28636 2.59611 2.80457 3.02423 3.12102 3.53063 3.67902 3.82293 3.89011 3.94628 4.01689 4.04816 4.12005 4.14947 4.19114 4.32096 4.32416 4.42806 4.58674 4.70993 4.84666 4.88581 4.96749 5.05704 5.08485 5.15704 5.20826 5.26940 5.29005 5.33635 5.36180 5.56455 5.78193 5.87472 6.28748 6.42347 6.54317 7.01303 7.37882 7.90969 8.63810 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.002027 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.483439 B =13811.758482 C =14244.996408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.335 6.335 14 C 0.506 3.494 15 O -0.530 6.530 16 C -0.131 4.131 17 C -0.069 4.069 18 C -0.112 4.112 19 C -0.104 4.104 20 C 0.067 3.933 21 N -0.500 5.500 22 C 0.032 3.968 23 C -0.127 4.127 24 C -0.119 4.119 25 C 0.034 3.966 26 C -0.041 4.041 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -28.421 -0.353 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.007 4.007 13 O -0.250 6.250 14 C 0.352 3.648 15 O -0.421 6.421 16 C -0.133 4.133 17 C -0.087 4.087 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.027 4.027 21 N -0.222 5.222 22 C -0.094 4.094 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.092 4.092 26 C -0.060 4.060 27 H 0.091 0.909 28 H 0.234 0.766 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.153 0.847 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.317 -28.237 -0.299 28.937 hybrid contribution 0.047 1.252 -0.015 1.253 sum 6.364 -26.985 -0.314 27.727 Atomic orbital electron populations 1.69675 1.06980 1.29767 1.49077 1.26159 0.96612 1.02667 0.95625 0.84828 0.77878 0.76230 0.78800 1.19432 1.19425 1.19487 1.19735 0.92982 0.83298 1.50695 0.89651 1.41736 1.09579 1.04166 1.63946 1.20013 0.88066 0.85252 0.84240 1.90519 1.15320 1.87659 1.56778 1.22571 0.90197 0.82407 1.05477 1.86580 1.40334 1.14553 1.83565 1.21711 0.87429 0.83555 0.72111 1.90799 1.16929 1.86986 1.47380 1.18974 0.93406 0.90013 1.10920 1.21704 0.91533 1.01226 0.94263 1.21350 1.01483 0.90940 0.99264 1.22169 0.95052 0.98712 0.96394 1.18854 0.91315 0.90835 1.01677 1.62336 1.56044 0.99197 1.04658 1.23111 0.99084 0.93592 0.93662 1.22419 1.02772 0.94882 0.96380 1.22500 1.02522 0.94478 0.96233 1.23457 1.00117 0.94004 0.91604 1.21029 1.00837 0.89233 0.94944 0.90944 0.76556 0.87494 0.87498 0.84682 0.81946 0.82652 0.90614 0.92267 0.89746 0.90151 0.88950 0.90928 0.92157 0.90325 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -28.95 5.29 -306.98 -1.62 -30.58 16 10 C 0.44 21.77 7.86 87.66 0.69 22.46 16 11 O -0.62 -35.28 16.08 15.72 0.25 -35.03 16 12 C 0.07 2.78 5.95 71.24 0.42 3.21 16 13 O -0.34 -13.15 9.00 -49.86 -0.45 -13.60 16 14 C 0.51 17.75 7.90 70.34 0.56 18.30 16 15 O -0.53 -20.14 16.13 19.92 0.32 -19.82 16 16 C -0.13 -3.76 5.87 -20.11 -0.12 -3.88 16 17 C -0.07 -1.69 9.61 22.55 0.22 -1.48 16 18 C -0.11 -1.93 10.02 22.21 0.22 -1.71 16 19 C -0.10 -1.61 7.90 22.45 0.18 -1.43 16 20 C 0.07 1.34 4.86 38.17 0.19 1.52 16 21 N -0.50 -8.59 5.27 -682.87 -3.60 -12.19 16 22 C 0.03 0.41 6.48 86.45 0.56 0.97 16 23 C -0.13 -1.04 6.93 31.48 0.22 -0.82 16 24 C -0.12 -1.05 7.06 31.80 0.22 -0.83 16 25 C 0.03 0.43 6.43 86.65 0.56 0.99 16 26 C -0.04 -1.05 9.52 22.68 0.22 -0.84 16 27 H 0.28 13.99 8.31 -92.72 -0.77 13.22 16 28 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 29 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.14 3.62 7.60 -2.91 -0.02 3.60 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.49 7.02 -2.91 -0.02 1.47 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.67 6.29 -2.39 -0.02 0.66 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.66 7.02 -2.39 -0.02 0.65 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.13 3.60 7.65 -2.91 -0.02 3.58 16 Total: -1.00 -70.63 359.40 2.94 -67.69 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.32 Total: 29.80 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.41 Total: 18.13 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -4.94 Total: -91.41 kcal Atomic # 8 Polarization: -68.57 SS G_CDS: 0.13 Total: -68.45 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.63 2.94 -67.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850247502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.866 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds