Wall clock time and date at job start Tue Mar 31 2020 12:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86802 * 119.99526 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99648 * 3 2 1 5 5 H 1.48495 * 109.47474 * 29.99851 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00106 * 3 2 1 7 7 C 1.39927 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99964 * 196.78860 * 7 2 1 9 9 C 1.41408 * 120.00175 * 16.79492 * 7 2 1 10 10 C 1.40785 * 120.20863 * 25.17897 * 9 7 2 11 11 C 1.37653 * 119.90150 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32388 * 0.02562 * 11 10 9 13 13 C 1.39296 * 120.42372 * 359.97438 * 12 11 10 14 14 N 1.39748 * 119.95117 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00071 * 145.76396 * 14 13 12 16 16 O 1.21382 * 120.00255 * 354.88936 * 15 14 13 17 17 C 1.49353 * 120.00003 * 174.88504 * 15 14 13 18 18 O 1.21355 * 120.00051 * 0.02562 * 17 15 14 19 19 N 1.34781 * 120.00075 * 179.97438 * 17 15 14 20 20 O 1.41606 * 119.99783 * 180.02562 * 19 17 15 21 21 C 1.42900 * 113.99760 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46960 * 179.97438 * 21 20 19 23 23 C 1.53783 * 113.61022 * 85.86565 * 22 21 20 24 24 C 1.54053 * 86.98191 * 140.01777 * 23 22 21 25 25 C 1.53777 * 87.07969 * 334.56678 * 24 23 22 26 26 C 1.38341 * 120.09709 * 0.25500 * 13 12 11 27 27 H 0.96999 * 120.00346 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.04835 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.83983 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78187 * 180.02562 * 12 11 10 31 31 H 0.97002 * 119.99652 * 325.75997 * 14 13 12 32 32 H 0.96994 * 120.00162 * 0.02562 * 19 17 15 33 33 H 1.09003 * 109.47104 * 59.99892 * 21 20 19 34 34 H 1.08995 * 109.47441 * 300.00279 * 21 20 19 35 35 H 1.08998 * 112.85214 * 314.66747 * 22 21 20 36 36 H 1.09000 * 113.60787 * 254.60929 * 23 22 21 37 37 H 1.09000 * 113.61832 * 25.51665 * 23 22 21 38 38 H 1.09005 * 113.61999 * 220.01874 * 24 23 22 39 39 H 1.09004 * 113.61641 * 89.11203 * 24 23 22 40 40 H 1.09003 * 113.61523 * 270.88283 * 25 24 23 41 41 H 1.09005 * 113.69322 * 139.99163 * 25 24 23 42 42 H 1.07998 * 120.16946 * 179.74629 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4404 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2707 9 6 1.3463 -2.4105 -0.3528 10 6 0.2111 -2.3742 -1.1847 11 6 -0.4279 -3.5450 -1.5250 12 6 0.0401 -4.7601 -1.0526 13 6 1.1621 -4.8117 -0.2286 14 7 1.6255 -6.0429 0.2429 15 6 2.9470 -6.2453 0.4128 16 8 3.7406 -5.3933 0.0697 17 6 3.4351 -7.5179 1.0235 18 8 2.6418 -8.3698 1.3662 19 7 4.7568 -7.7205 1.1930 20 8 5.2195 -8.9273 1.7715 21 6 6.6413 -9.0068 1.8912 22 6 7.0257 -10.3448 2.5258 23 6 7.1571 -11.4927 1.5109 24 6 8.3860 -11.9556 2.3163 25 6 8.5352 -10.4962 2.7774 26 6 1.8149 -3.6454 0.1283 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1579 -1.4293 -1.5552 29 1 -1.2989 -3.5160 -2.1629 30 1 -0.4677 -5.6733 -1.3255 31 1 0.9959 -6.7518 0.4478 32 1 5.3909 -7.0398 0.9188 33 1 6.9992 -8.1910 2.5193 34 1 7.0940 -8.9296 0.9027 35 1 6.4116 -10.5950 3.3909 36 1 6.3252 -12.1965 1.5378 37 1 7.3972 -11.1580 0.5017 38 1 9.2105 -12.3033 1.6938 39 1 8.1438 -12.6461 3.1242 40 1 9.1515 -9.8894 2.1139 41 1 8.8155 -10.3945 3.8259 42 1 2.6825 -3.6836 0.7703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850719454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:54 Heat of formation + Delta-G solvation = -20.979836 kcal Electronic energy + Delta-G solvation = -25070.915949 eV Core-core repulsion = 21211.827470 eV Total energy + Delta-G solvation = -3859.088480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54729 -39.53492 -38.65625 -37.22146 -37.03240 -34.71983 -33.15929 -32.37735 -29.90287 -28.85304 -28.37432 -26.05363 -25.40537 -24.57472 -23.27539 -21.49751 -20.94667 -20.04559 -19.71592 -18.82989 -18.08574 -17.23146 -16.53871 -16.27449 -15.88194 -15.62911 -15.25586 -15.14108 -14.91785 -14.64208 -14.29547 -13.81848 -13.60183 -13.10155 -12.94444 -12.90390 -12.67051 -12.26169 -12.21932 -11.78100 -11.56396 -11.43842 -11.30131 -11.17936 -11.09914 -10.94772 -10.83730 -10.63285 -10.50647 -10.15532 -9.74144 -9.52986 -9.17473 -9.14610 -9.09872 -7.52931 -7.05088 -6.77243 -4.39622 1.36701 1.46534 2.71733 2.86340 3.07130 3.11223 3.17309 3.39056 3.48887 3.92589 3.98090 4.12178 4.21665 4.38192 4.53318 4.56469 4.59716 4.81740 4.90978 5.03993 5.26363 5.29601 5.39006 5.47628 5.60463 5.63449 5.74951 6.01130 6.17608 6.32489 6.45207 6.51052 6.68287 6.93093 6.94775 6.99503 7.18711 7.38058 7.60050 7.81602 7.85922 8.00706 8.03529 8.10592 8.37508 8.60504 8.86706 8.90561 10.16746 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.002288 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.718726 B =12232.402641 C =13390.814128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.166 4.166 11 C -0.091 4.091 12 C -0.253 4.253 13 C 0.143 3.857 14 N -0.627 5.627 15 C 0.512 3.488 16 O -0.497 6.497 17 C 0.523 3.477 18 O -0.505 6.505 19 N -0.573 5.573 20 O -0.138 6.138 21 C 0.038 3.962 22 C -0.105 4.105 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.209 4.209 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.413 0.587 32 H 0.421 0.579 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.581 -15.702 3.169 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.186 4.186 11 C -0.111 4.111 12 C -0.274 4.274 13 C 0.052 3.948 14 N -0.272 5.272 15 C 0.291 3.709 16 O -0.371 6.371 17 C 0.304 3.696 18 O -0.378 6.378 19 N -0.277 5.277 20 O -0.141 6.141 21 C -0.040 4.040 22 C -0.124 4.124 23 C -0.174 4.174 24 C -0.180 4.180 25 C -0.167 4.167 26 C -0.230 4.230 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.260 -15.717 3.285 20.203 hybrid contribution 0.573 0.686 0.090 0.898 sum 12.833 -15.031 3.375 20.050 Atomic orbital electron populations 1.69819 1.07541 1.29264 1.35247 1.25917 0.94765 1.01353 0.92230 0.86279 0.80480 0.80436 0.79343 1.19238 1.20333 1.18595 1.19582 0.97820 0.90862 1.40391 0.90246 1.17480 0.90977 0.91547 0.88417 1.21403 0.99114 0.96962 1.01086 1.20482 0.98584 0.92536 0.99448 1.20074 1.01882 0.97240 1.08201 1.17433 0.96740 0.82501 0.98101 1.43052 1.05930 1.15897 1.62328 1.19420 0.84142 0.86231 0.81065 1.90836 1.54335 1.44202 1.47773 1.20364 0.80983 0.88214 0.80035 1.90766 1.54041 1.44481 1.48520 1.47117 1.06795 1.11868 1.61907 1.90595 1.22311 1.20560 1.80664 1.23176 0.80861 0.99085 1.00858 1.22558 0.97300 0.92614 0.99953 1.23057 0.98533 0.97721 0.98075 1.22856 0.98585 0.96344 1.00200 1.22916 0.94424 0.97257 1.02125 1.20968 1.04390 0.90945 1.06697 0.90826 0.86135 0.88720 0.88846 0.75103 0.73697 0.91536 0.91595 0.87842 0.90912 0.89818 0.91107 0.89934 0.89699 0.90831 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.21 10.94 55.55 0.61 -19.60 16 2 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 3 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 9 C 0.12 3.17 5.57 -106.85 -0.59 2.58 16 10 C -0.17 -4.24 8.69 -38.83 -0.34 -4.58 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 12 C -0.25 -5.47 9.97 -39.08 -0.39 -5.86 16 13 C 0.14 3.20 6.25 -83.82 -0.52 2.67 16 14 N -0.63 -11.65 5.32 -10.34 -0.06 -11.70 16 15 C 0.51 9.23 7.61 -11.63 -0.09 9.14 16 16 O -0.50 -10.04 14.23 5.47 0.08 -9.96 16 17 C 0.52 8.44 8.03 -11.63 -0.09 8.35 16 18 O -0.51 -9.18 16.89 -12.69 -0.21 -9.39 16 19 N -0.57 -7.68 6.38 30.88 0.20 -7.48 16 20 O -0.14 -1.76 11.11 -29.65 -0.33 -2.09 16 21 C 0.04 0.32 6.05 37.16 0.22 0.54 16 22 C -0.10 -0.76 4.00 -89.80 -0.36 -1.12 16 23 C -0.14 -0.94 7.65 -25.77 -0.20 -1.14 16 24 C -0.14 -0.78 8.09 -25.78 -0.21 -0.99 16 25 C -0.13 -0.71 7.64 -25.92 -0.20 -0.91 16 26 C -0.21 -5.23 8.39 -38.67 -0.32 -5.55 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.41 6.64 8.30 -40.82 -0.34 6.30 16 32 H 0.42 4.73 8.01 -40.82 -0.33 4.40 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 2.69 6.48 -52.49 -0.34 2.35 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -30.44 361.96 -8.71 -39.15 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.50 Total: 12.08 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -3.92 Total: -10.05 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.75 Total: -38.78 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.47 Total: -21.44 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.44 -8.71 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850719454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds