Wall clock time and date at job start Tue Mar 31 2020 12:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86802 * 119.99526 * 2 1 4 4 H 1.48501 * 109.46944 * 269.99648 * 3 2 1 5 5 H 1.48495 * 109.47474 * 29.99851 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00106 * 3 2 1 7 7 C 1.39927 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99964 * 196.78860 * 7 2 1 9 9 C 1.41408 * 120.00175 * 16.79492 * 7 2 1 10 10 C 1.40785 * 120.20863 * 25.17897 * 9 7 2 11 11 C 1.37653 * 119.90150 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32388 * 0.02562 * 11 10 9 13 13 C 1.39296 * 120.42372 * 359.97438 * 12 11 10 14 14 N 1.39748 * 119.95117 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00071 * 145.76396 * 14 13 12 16 16 O 1.21382 * 120.00255 * 354.88936 * 15 14 13 17 17 C 1.49353 * 120.00003 * 174.88504 * 15 14 13 18 18 O 1.21355 * 120.00051 * 0.02562 * 17 15 14 19 19 N 1.34781 * 120.00075 * 179.97438 * 17 15 14 20 20 O 1.41606 * 119.99783 * 180.02562 * 19 17 15 21 21 C 1.42900 * 113.99760 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46960 * 179.97438 * 21 20 19 23 23 C 1.53783 * 113.61022 * 85.86565 * 22 21 20 24 24 C 1.54053 * 86.98191 * 140.01777 * 23 22 21 25 25 C 1.53777 * 87.07969 * 334.56678 * 24 23 22 26 26 C 1.38341 * 120.09709 * 0.25500 * 13 12 11 27 27 H 0.96999 * 120.00346 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.04835 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.83983 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78187 * 180.02562 * 12 11 10 31 31 H 0.97002 * 119.99652 * 325.75997 * 14 13 12 32 32 H 0.96994 * 120.00162 * 0.02562 * 19 17 15 33 33 H 1.09003 * 109.47104 * 59.99892 * 21 20 19 34 34 H 1.08995 * 109.47441 * 300.00279 * 21 20 19 35 35 H 1.08998 * 112.85214 * 314.66747 * 22 21 20 36 36 H 1.09000 * 113.60787 * 254.60929 * 23 22 21 37 37 H 1.09000 * 113.61832 * 25.51665 * 23 22 21 38 38 H 1.09005 * 113.61999 * 220.01874 * 24 23 22 39 39 H 1.09004 * 113.61641 * 89.11203 * 24 23 22 40 40 H 1.09003 * 113.61523 * 270.88283 * 25 24 23 41 41 H 1.09005 * 113.69322 * 139.99163 * 25 24 23 42 42 H 1.07998 * 120.16946 * 179.74629 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4404 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2707 9 6 1.3463 -2.4105 -0.3528 10 6 0.2111 -2.3742 -1.1847 11 6 -0.4279 -3.5450 -1.5250 12 6 0.0401 -4.7601 -1.0526 13 6 1.1621 -4.8117 -0.2286 14 7 1.6255 -6.0429 0.2429 15 6 2.9470 -6.2453 0.4128 16 8 3.7406 -5.3933 0.0697 17 6 3.4351 -7.5179 1.0235 18 8 2.6418 -8.3698 1.3662 19 7 4.7568 -7.7205 1.1930 20 8 5.2195 -8.9273 1.7715 21 6 6.6413 -9.0068 1.8912 22 6 7.0257 -10.3448 2.5258 23 6 7.1571 -11.4927 1.5109 24 6 8.3860 -11.9556 2.3163 25 6 8.5352 -10.4962 2.7774 26 6 1.8149 -3.6454 0.1283 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1579 -1.4293 -1.5552 29 1 -1.2989 -3.5160 -2.1629 30 1 -0.4677 -5.6733 -1.3255 31 1 0.9959 -6.7518 0.4478 32 1 5.3909 -7.0398 0.9188 33 1 6.9992 -8.1910 2.5193 34 1 7.0940 -8.9296 0.9027 35 1 6.4116 -10.5950 3.3909 36 1 6.3252 -12.1965 1.5378 37 1 7.3972 -11.1580 0.5017 38 1 9.2105 -12.3033 1.6938 39 1 8.1438 -12.6461 3.1242 40 1 9.1515 -9.8894 2.1139 41 1 8.8155 -10.3945 3.8259 42 1 2.6825 -3.6836 0.7703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850719454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:53 Heat of formation + Delta-G solvation = -38.864296 kcal Electronic energy + Delta-G solvation = -25071.691478 eV Core-core repulsion = 21211.827470 eV Total energy + Delta-G solvation = -3859.864008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99800 -40.37045 -39.85353 -38.90778 -38.06572 -36.41358 -34.92727 -33.53055 -31.78273 -30.34714 -29.35994 -27.29722 -26.54496 -26.01340 -23.90175 -23.14788 -22.70403 -21.42100 -20.39220 -20.16044 -19.58633 -18.67816 -17.78200 -17.49646 -17.26174 -16.92145 -16.60006 -16.45209 -16.20554 -15.80033 -15.60510 -15.24397 -14.78862 -14.68653 -14.47244 -14.01561 -13.57412 -13.39679 -13.36428 -13.10741 -13.05121 -12.89639 -12.81009 -12.71599 -12.20274 -12.18307 -11.92561 -11.62383 -11.53577 -11.35623 -11.20911 -11.17278 -10.94611 -10.72897 -10.25125 -9.42283 -8.85916 -8.62663 -6.36856 0.01719 0.23962 0.95266 1.07091 1.39162 1.51762 1.52217 2.00689 2.05282 2.22234 2.72814 3.08655 3.28927 3.57950 3.65841 3.71025 3.85960 3.93802 4.20826 4.32318 4.41200 4.44538 4.59710 4.80955 4.82367 4.85070 4.86732 5.06827 5.07767 5.08107 5.08336 5.09817 5.23694 5.28997 5.38282 5.49296 5.55060 5.72883 5.80217 6.04666 6.07559 6.26824 6.30380 6.62934 6.72592 6.83906 6.94809 6.99649 8.33388 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.002288 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.718726 B =12232.402641 C =13390.814128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.089 3.911 10 C -0.191 4.191 11 C -0.089 4.089 12 C -0.244 4.244 13 C 0.149 3.851 14 N -0.622 5.622 15 C 0.516 3.484 16 O -0.520 6.520 17 C 0.533 3.467 18 O -0.527 6.527 19 N -0.558 5.558 20 O -0.153 6.153 21 C 0.030 3.970 22 C -0.109 4.109 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.231 4.231 27 H 0.290 0.710 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.427 0.573 32 H 0.431 0.569 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.416 -16.651 3.067 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.087 0.913 9 C 0.086 3.914 10 C -0.210 4.210 11 C -0.108 4.108 12 C -0.265 4.265 13 C 0.057 3.943 14 N -0.269 5.269 15 C 0.297 3.703 16 O -0.395 6.395 17 C 0.313 3.687 18 O -0.402 6.402 19 N -0.261 5.261 20 O -0.157 6.157 21 C -0.046 4.046 22 C -0.129 4.129 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.159 4.159 26 C -0.253 4.253 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.266 0.734 32 H 0.275 0.725 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.120 -16.701 3.188 21.476 hybrid contribution 0.361 0.795 0.133 0.883 sum 13.480 -15.906 3.321 21.113 Atomic orbital electron populations 1.69854 1.08764 1.30637 1.35433 1.26714 0.95582 1.04318 0.91231 0.85203 0.78955 0.75942 0.79600 1.18510 1.18968 1.18644 1.19756 0.97721 0.92357 1.42789 0.91285 1.17820 0.91954 0.92338 0.89260 1.21382 0.99790 0.97624 1.02243 1.20837 0.98960 0.91947 0.99071 1.20489 1.01130 0.98340 1.06522 1.17480 0.96403 0.83067 0.97339 1.42931 1.06638 1.15052 1.62261 1.19740 0.83697 0.86675 0.80214 1.90832 1.54906 1.45266 1.48522 1.19723 0.81780 0.87045 0.80104 1.90761 1.54778 1.44819 1.49832 1.46905 1.06179 1.12554 1.60485 1.90609 1.25069 1.19577 1.80492 1.23521 0.78657 1.00281 1.02170 1.22641 0.98572 0.91944 0.99732 1.23114 0.99024 0.97550 0.98340 1.22852 0.98056 0.96508 1.00110 1.22920 0.92840 0.97229 1.02879 1.20958 1.04823 0.91825 1.07659 0.89970 0.87523 0.85642 0.85054 0.73442 0.72494 0.90269 0.90139 0.88645 0.91899 0.89598 0.90187 0.89602 0.88732 0.90083 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.67 10.94 21.82 0.24 -42.43 16 2 C 0.04 1.87 5.16 85.25 0.44 2.31 16 3 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.55 9.05 23.46 0.21 -27.34 16 8 H 0.07 3.80 7.90 -2.91 -0.02 3.77 16 9 C 0.09 4.93 5.57 -21.31 -0.12 4.81 16 10 C -0.19 -9.92 8.69 22.75 0.20 -9.72 16 11 C -0.09 -3.96 10.02 22.20 0.22 -3.74 16 12 C -0.24 -10.07 9.97 22.59 0.23 -9.85 16 13 C 0.15 6.58 6.25 38.16 0.24 6.82 16 14 N -0.62 -22.53 5.32 -304.99 -1.62 -24.15 16 15 C 0.52 18.38 7.61 87.24 0.66 19.04 16 16 O -0.52 -21.11 14.23 -3.35 -0.05 -21.16 16 17 C 0.53 16.75 8.03 87.24 0.70 17.45 16 18 O -0.53 -18.61 16.89 14.12 0.24 -18.37 16 19 N -0.56 -14.32 6.38 -174.57 -1.11 -15.44 16 20 O -0.15 -3.73 11.11 -21.41 -0.24 -3.96 16 21 C 0.03 0.46 6.05 71.98 0.44 0.90 16 22 C -0.11 -1.43 4.00 -10.27 -0.04 -1.47 16 23 C -0.14 -1.79 7.65 31.21 0.24 -1.55 16 24 C -0.14 -1.25 8.09 31.21 0.25 -1.00 16 25 C -0.12 -1.06 7.64 31.12 0.24 -0.83 16 26 C -0.23 -11.90 8.39 22.86 0.19 -11.71 16 27 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 28 H 0.11 5.75 6.17 -2.91 -0.02 5.74 16 29 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.43 13.03 8.30 -92.71 -0.77 12.26 16 32 H 0.43 9.19 8.01 -92.71 -0.74 8.45 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.01 7.88 -2.39 -0.02 0.99 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.03 7.92 -2.39 -0.02 1.01 16 38 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.09 4.94 6.48 -2.91 -0.02 4.93 16 Total: -1.00 -66.88 361.96 3.14 -63.74 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.44 Total: 36.99 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.10 Total: -15.87 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.50 Total: -82.02 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.05 Total: -43.49 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -66.88 3.14 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850719454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.874 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds