Wall clock time and date at job start Tue Mar 31 2020 13:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.27649 * 125.76643 * 2 1 4 4 O 1.41377 * 113.16855 * 180.34632 * 3 2 1 5 5 C 1.44256 * 107.50886 * 342.63006 * 4 3 2 6 6 H 1.09000 * 111.00888 * 267.00787 * 5 4 3 7 7 C 1.52995 * 111.01187 * 143.17771 * 5 4 3 8 8 N 1.46501 * 109.47592 * 66.45057 * 7 5 4 9 9 C 1.34774 * 119.99901 * 179.97438 * 8 7 5 10 10 O 1.21279 * 120.00493 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99637 * 180.02562 * 9 8 7 12 12 C 1.50702 * 109.47088 * 179.97438 * 11 9 8 13 13 C 1.38311 * 119.92915 * 89.99653 * 12 11 9 14 14 C 1.38096 * 120.06782 * 180.02562 * 13 12 11 15 15 C 1.38883 * 119.93001 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06733 * 179.72546 * 15 14 13 17 17 C 1.34835 * 116.99867 * 174.45565 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31554 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99933 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46952 * 60.00228 * 21 19 17 23 23 H 1.48502 * 109.46943 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47529 * 300.00142 * 21 19 17 25 25 C 1.38878 * 119.86281 * 0.02562 * 15 14 13 26 26 C 1.38101 * 119.93252 * 0.02562 * 25 15 14 27 27 C 1.51682 * 125.76875 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47499 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47758 * 120.02313 * 1 2 3 30 30 H 1.08998 * 109.47398 * 240.02585 * 1 2 3 31 31 H 1.09003 * 109.47167 * 306.44771 * 7 5 4 32 32 H 1.09003 * 109.47074 * 186.45507 * 7 5 4 33 33 H 0.96997 * 119.99789 * 0.02562 * 8 7 5 34 34 H 1.08992 * 109.47282 * 60.00082 * 11 9 8 35 35 H 1.08999 * 109.46898 * 299.99462 * 11 9 8 36 36 H 1.08001 * 119.96584 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.03699 * 179.97438 * 14 13 12 38 38 H 0.97002 * 120.00599 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.03391 * 179.97438 * 25 15 14 40 40 H 1.07995 * 119.96459 * 179.97438 * 26 25 15 41 41 H 1.09001 * 110.80372 * 77.01256 * 27 2 1 42 42 H 1.08993 * 110.80595 * 313.50501 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0358 0.0000 4 8 3.6327 0.7274 -0.0079 5 6 3.7719 -0.6501 0.3973 6 1 3.9332 -0.7267 1.4726 7 6 4.9002 -1.3375 -0.3741 8 7 6.1839 -0.7407 0.0031 9 6 7.3258 -1.1910 -0.5536 10 8 7.2907 -2.0904 -1.3663 11 6 8.6464 -0.5775 -0.1651 12 6 9.7579 -1.2554 -0.9241 13 6 10.1535 -0.7630 -2.1546 14 6 11.1714 -1.3823 -2.8528 15 6 11.7982 -2.5003 -2.3180 16 8 12.7953 -3.1146 -3.0045 17 6 13.4380 -4.1220 -2.3800 18 1 13.0995 -4.4605 -1.4119 19 6 14.5336 -4.7232 -2.9807 20 7 14.9457 -4.3110 -4.1600 21 14 15.4244 -6.1184 -2.1152 22 1 14.4803 -7.2413 -1.8853 23 1 16.5528 -6.5849 -2.9604 24 1 15.9488 -5.6378 -0.8117 25 6 11.3986 -2.9922 -1.0823 26 6 10.3794 -2.3691 -0.3894 27 6 2.3935 -1.2307 -0.0006 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3635 -0.5142 -0.8898 30 1 -0.3634 -0.5134 0.8902 31 1 4.7399 -1.2081 -1.4445 32 1 4.9092 -2.4007 -0.1341 33 1 6.2121 -0.0221 0.6540 34 1 8.8063 -0.7070 0.9052 35 1 8.6377 0.4857 -0.4053 36 1 9.6654 0.1062 -2.5701 37 1 11.4796 -0.9977 -3.8138 38 1 15.7124 -4.7313 -4.5802 39 1 11.8839 -3.8618 -0.6640 40 1 10.0679 -2.7515 0.5714 41 1 2.4340 -1.6782 -0.9936 42 1 2.0507 -1.9552 0.7381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854796156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:02 Heat of formation + Delta-G solvation = -21.722908 kcal Electronic energy + Delta-G solvation = -24806.041200 eV Core-core repulsion = 20946.920498 eV Total energy + Delta-G solvation = -3859.120702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78249 -39.66668 -38.71318 -36.50826 -35.25470 -34.10039 -32.46464 -31.90653 -31.00596 -30.08530 -28.95817 -27.43315 -25.89453 -24.89428 -22.34076 -21.90831 -21.15290 -20.28789 -19.99852 -17.92179 -17.42082 -17.10403 -16.85319 -16.50311 -15.91972 -15.36915 -15.01865 -14.56210 -14.47707 -14.25464 -13.99554 -13.79480 -13.62372 -13.42941 -13.41675 -13.31731 -13.17949 -12.75903 -12.63767 -12.41072 -12.19412 -11.93640 -11.77179 -11.45041 -11.21306 -11.08303 -10.79205 -10.69931 -10.59038 -10.39350 -9.90522 -9.72649 -9.27478 -9.20056 -8.76873 -8.08506 -7.10238 -6.39541 -3.98163 1.31535 2.30702 2.31918 2.55558 2.78756 3.06005 3.16401 3.18498 3.20216 3.60680 3.90401 4.01289 4.07010 4.21344 4.44808 4.61269 4.77128 4.84966 4.89511 4.99887 5.03070 5.06714 5.16716 5.27723 5.30601 5.37846 5.40342 5.51040 5.58622 5.73259 5.79030 5.91920 6.26742 6.27985 6.48382 6.76877 6.93942 6.97995 7.11136 7.30054 7.43122 7.44053 7.51153 7.90526 8.05672 8.31796 9.05961 9.77254 10.78568 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035876 B = 0.001897 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.278436 B =14757.914419 C =14994.777990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.082 3.918 3 N -0.292 5.292 4 O -0.194 6.194 5 C 0.030 3.970 6 H 0.095 0.905 7 C 0.129 3.871 8 N -0.738 5.738 9 C 0.511 3.489 10 O -0.521 6.521 11 C -0.079 4.079 12 C -0.170 4.170 13 C -0.059 4.059 14 C -0.192 4.192 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.233 4.233 26 C -0.057 4.057 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.367 7.068 12.495 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 N -0.034 5.034 4 O -0.212 6.212 5 C -0.029 4.029 6 H 0.112 0.888 7 C 0.004 3.996 8 N -0.393 5.393 9 C 0.298 3.702 10 O -0.395 6.395 11 C -0.119 4.119 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.075 4.075 27 C -0.188 4.188 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.852 7.576 11.422 29.261 hybrid contribution 0.439 -1.388 0.852 1.687 sum -25.413 6.188 12.274 28.892 Atomic orbital electron populations 1.20449 0.85200 1.04768 1.04156 1.26308 0.98260 0.92141 0.94438 1.77948 0.89254 1.23235 1.12990 1.91323 1.15578 1.26534 1.87778 1.23955 0.95204 0.83578 1.00181 0.88754 1.21336 0.81443 0.97215 0.99629 1.45974 1.05752 1.40557 1.46996 1.21091 0.85384 0.83005 0.80757 1.90746 1.87045 1.29236 1.32451 1.20400 0.90019 1.00369 1.01111 1.18639 1.00612 1.00400 0.97476 1.20415 0.95461 0.98392 0.93506 1.20158 1.01160 0.97758 1.02007 1.19388 0.88967 0.91025 0.90326 1.83979 1.40705 1.43988 1.39529 1.21279 1.11018 1.10524 1.03926 0.89158 1.25279 0.96201 0.98903 0.96165 1.70031 1.24948 1.40592 1.14304 0.85786 0.78858 0.79988 0.78809 1.19545 1.20309 1.19543 1.21099 1.02501 1.04153 0.97461 1.20501 0.94798 0.94035 0.98170 1.23096 0.91418 0.98699 1.05601 0.89861 0.89083 0.89218 0.90602 0.89721 0.76374 0.88950 0.88822 0.87349 0.86541 0.92034 0.85605 0.87845 0.87382 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.23 10.49 36.00 0.38 0.15 16 2 C 0.08 0.51 7.45 -78.58 -0.59 -0.08 16 3 N -0.29 -2.91 12.45 35.65 0.44 -2.46 16 4 O -0.19 -2.08 12.23 -11.36 -0.14 -2.22 16 5 C 0.03 0.22 3.86 -25.80 -0.10 0.12 16 6 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 7 C 0.13 1.18 5.37 -4.04 -0.02 1.16 16 8 N -0.74 -7.59 5.55 -60.29 -0.33 -7.92 16 9 C 0.51 7.23 7.82 -10.98 -0.09 7.14 16 10 O -0.52 -9.92 16.03 5.56 0.09 -9.83 16 11 C -0.08 -1.03 5.83 -29.03 -0.17 -1.20 16 12 C -0.17 -3.06 4.38 -104.57 -0.46 -3.52 16 13 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 14 C -0.19 -4.31 9.99 -39.39 -0.39 -4.71 16 15 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 16 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 17 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 18 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 21 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 27 C -0.15 -0.74 6.63 -26.47 -0.18 -0.91 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.15 8.47 -40.82 -0.35 2.81 16 34 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.13 2.86 5.64 -52.48 -0.30 2.56 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.11 0.49 7.91 -51.93 -0.41 0.08 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -37.29 365.44 -7.03 -44.32 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.53 Total: 3.87 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.80 Total: -16.81 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.87 Total: -35.50 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.05 Total: -17.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.29 -7.03 -44.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854796156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.598 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds