Wall clock time and date at job start Tue Mar 31 2020 13:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.27649 * 125.76643 * 2 1 4 4 O 1.41377 * 113.16855 * 180.34632 * 3 2 1 5 5 C 1.44256 * 107.50886 * 342.63006 * 4 3 2 6 6 H 1.09000 * 111.00888 * 267.00787 * 5 4 3 7 7 C 1.52995 * 111.01187 * 143.17771 * 5 4 3 8 8 N 1.46501 * 109.47592 * 66.45057 * 7 5 4 9 9 C 1.34774 * 119.99901 * 179.97438 * 8 7 5 10 10 O 1.21279 * 120.00493 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99637 * 180.02562 * 9 8 7 12 12 C 1.50702 * 109.47088 * 179.97438 * 11 9 8 13 13 C 1.38311 * 119.92915 * 89.99653 * 12 11 9 14 14 C 1.38096 * 120.06782 * 180.02562 * 13 12 11 15 15 C 1.38883 * 119.93001 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06733 * 179.72546 * 15 14 13 17 17 C 1.34835 * 116.99867 * 174.45565 * 16 15 14 18 18 H 1.08001 * 119.99908 * 5.03572 * 17 16 15 19 19 C 1.38654 * 119.99862 * 185.04415 * 17 16 15 20 20 N 1.31554 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99933 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46952 * 60.00228 * 21 19 17 23 23 H 1.48502 * 109.46943 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47529 * 300.00142 * 21 19 17 25 25 C 1.38878 * 119.86281 * 0.02562 * 15 14 13 26 26 C 1.38101 * 119.93252 * 0.02562 * 25 15 14 27 27 C 1.51682 * 125.76875 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47499 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47758 * 120.02313 * 1 2 3 30 30 H 1.08998 * 109.47398 * 240.02585 * 1 2 3 31 31 H 1.09003 * 109.47167 * 306.44771 * 7 5 4 32 32 H 1.09003 * 109.47074 * 186.45507 * 7 5 4 33 33 H 0.96997 * 119.99789 * 0.02562 * 8 7 5 34 34 H 1.08992 * 109.47282 * 60.00082 * 11 9 8 35 35 H 1.08999 * 109.46898 * 299.99462 * 11 9 8 36 36 H 1.08001 * 119.96584 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.03699 * 179.97438 * 14 13 12 38 38 H 0.97002 * 120.00599 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.03391 * 179.97438 * 25 15 14 40 40 H 1.07995 * 119.96459 * 179.97438 * 26 25 15 41 41 H 1.09001 * 110.80372 * 77.01256 * 27 2 1 42 42 H 1.08993 * 110.80595 * 313.50501 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0358 0.0000 4 8 3.6327 0.7274 -0.0079 5 6 3.7719 -0.6501 0.3973 6 1 3.9332 -0.7267 1.4726 7 6 4.9002 -1.3375 -0.3741 8 7 6.1839 -0.7407 0.0031 9 6 7.3258 -1.1910 -0.5536 10 8 7.2907 -2.0904 -1.3663 11 6 8.6464 -0.5775 -0.1651 12 6 9.7579 -1.2554 -0.9241 13 6 10.1535 -0.7630 -2.1546 14 6 11.1714 -1.3823 -2.8528 15 6 11.7982 -2.5003 -2.3180 16 8 12.7953 -3.1146 -3.0045 17 6 13.4380 -4.1220 -2.3800 18 1 13.0995 -4.4605 -1.4119 19 6 14.5336 -4.7232 -2.9807 20 7 14.9457 -4.3110 -4.1600 21 14 15.4244 -6.1184 -2.1152 22 1 14.4803 -7.2413 -1.8853 23 1 16.5528 -6.5849 -2.9604 24 1 15.9488 -5.6378 -0.8117 25 6 11.3986 -2.9922 -1.0823 26 6 10.3794 -2.3691 -0.3894 27 6 2.3935 -1.2307 -0.0006 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3635 -0.5142 -0.8898 30 1 -0.3634 -0.5134 0.8902 31 1 4.7399 -1.2081 -1.4445 32 1 4.9092 -2.4007 -0.1341 33 1 6.2121 -0.0221 0.6540 34 1 8.8063 -0.7070 0.9052 35 1 8.6377 0.4857 -0.4053 36 1 9.6654 0.1062 -2.5701 37 1 11.4796 -0.9977 -3.8138 38 1 15.7124 -4.7313 -4.5802 39 1 11.8839 -3.8618 -0.6640 40 1 10.0679 -2.7515 0.5714 41 1 2.4340 -1.6782 -0.9936 42 1 2.0507 -1.9552 0.7381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854796156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:01 Heat of formation + Delta-G solvation = -49.213460 kcal Electronic energy + Delta-G solvation = -24807.233279 eV Core-core repulsion = 20946.920498 eV Total energy + Delta-G solvation = -3860.312781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41400 -40.96119 -40.28593 -38.23439 -36.14550 -34.68284 -34.39715 -33.09897 -32.06136 -31.77111 -29.28341 -28.64389 -27.41897 -26.37184 -23.63761 -22.99386 -22.54532 -21.25923 -20.78490 -19.84359 -18.86736 -18.13019 -17.87811 -17.24160 -16.75474 -16.60134 -16.29831 -16.03827 -15.76363 -15.60675 -15.44660 -15.05788 -14.70807 -14.43545 -14.38249 -14.29673 -14.09830 -13.74090 -13.63951 -13.54343 -13.25558 -12.95953 -12.75607 -12.68784 -12.46950 -12.42071 -12.29310 -12.24907 -12.13031 -11.57330 -11.18199 -10.96458 -10.74623 -10.45505 -10.14718 -9.76743 -8.90510 -8.46738 -6.15311 0.61135 0.66778 0.86163 1.34088 1.45381 1.51083 1.69664 2.00778 2.18255 2.20066 2.84357 3.13114 3.19886 3.44144 3.51607 3.61607 3.71379 3.85979 3.89960 4.05375 4.16743 4.22498 4.39166 4.48876 4.54793 4.59802 4.60981 4.68009 4.71192 4.77017 4.80119 4.80872 4.94185 5.08809 5.14590 5.30330 5.30785 5.39135 5.56207 5.71336 5.77743 6.02811 6.22474 6.44178 6.55846 6.97307 7.30242 7.78648 8.76467 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035876 B = 0.001897 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.278436 B =14757.914419 C =14994.777990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.099 3.901 3 N -0.343 5.343 4 O -0.228 6.228 5 C 0.031 3.969 6 H 0.111 0.889 7 C 0.129 3.871 8 N -0.720 5.720 9 C 0.513 3.487 10 O -0.579 6.579 11 C -0.078 4.078 12 C -0.146 4.146 13 C -0.060 4.060 14 C -0.207 4.207 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.416 4.416 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.244 4.244 26 C -0.059 4.059 27 C -0.147 4.147 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.273 0.727 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.379 7.240 15.796 34.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 N -0.088 5.088 4 O -0.245 6.245 5 C -0.027 4.027 6 H 0.129 0.871 7 C 0.004 3.996 8 N -0.374 5.374 9 C 0.300 3.700 10 O -0.458 6.458 11 C -0.117 4.117 12 C -0.147 4.147 13 C -0.078 4.078 14 C -0.227 4.227 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.492 4.492 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.263 4.263 26 C -0.077 4.077 27 C -0.186 4.186 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.254 0.746 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.926 7.813 14.787 33.413 hybrid contribution 0.980 -1.229 -0.065 1.573 sum -27.947 6.584 14.722 32.266 Atomic orbital electron populations 1.20672 0.82650 1.05136 1.06215 1.26994 0.99679 0.91827 0.90895 1.77973 0.89049 1.24968 1.16785 1.91269 1.16727 1.28048 1.88439 1.24021 0.95556 0.82572 1.00576 0.87119 1.21388 0.81506 0.97851 0.98855 1.45812 1.05304 1.40147 1.46099 1.21164 0.86505 0.82233 0.80053 1.90750 1.87865 1.31957 1.35203 1.20524 0.87248 1.01389 1.02563 1.19254 1.00126 0.98756 0.96576 1.20872 0.94130 0.98996 0.93768 1.20429 1.02211 0.97589 1.02436 1.19935 0.89380 0.92546 0.91943 1.83940 1.43015 1.45634 1.41494 1.21803 1.11748 1.10995 1.04634 0.88170 1.26637 0.96743 1.01853 0.96941 1.70187 1.26194 1.43047 1.16549 0.84624 0.77472 0.76057 0.77881 1.18277 1.19499 1.17968 1.21242 1.03660 1.04396 0.96998 1.20941 0.93388 0.94011 0.99327 1.23190 0.89827 0.98746 1.06880 0.90418 0.87232 0.86635 0.92613 0.89041 0.74611 0.85069 0.85535 0.83885 0.87085 0.91841 0.86294 0.84123 0.86932 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.19 10.49 71.23 0.75 0.56 16 2 C 0.10 0.99 7.45 46.89 0.35 1.34 16 3 N -0.34 -6.41 12.45 -40.62 -0.51 -6.92 16 4 O -0.23 -4.61 12.23 -38.29 -0.47 -5.08 16 5 C 0.03 0.38 3.86 31.20 0.12 0.50 16 6 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 7 C 0.13 2.09 5.37 86.38 0.46 2.56 16 8 N -0.72 -12.56 5.55 -463.06 -2.57 -15.13 16 9 C 0.51 12.88 7.82 87.66 0.69 13.56 16 10 O -0.58 -21.11 16.03 -3.03 -0.05 -21.16 16 11 C -0.08 -1.65 5.83 29.10 0.17 -1.48 16 12 C -0.15 -4.83 4.38 -19.83 -0.09 -4.92 16 13 C -0.06 -2.21 9.69 22.25 0.22 -1.99 16 14 C -0.21 -9.64 9.99 22.39 0.22 -9.42 16 15 C 0.11 5.99 6.65 22.58 0.15 6.14 16 16 O -0.23 -14.87 9.76 -22.81 -0.22 -15.09 16 17 C -0.42 -25.27 9.49 67.92 0.64 -24.62 16 18 H 0.10 5.59 5.21 -2.91 -0.02 5.57 16 19 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 20 N -0.92 -58.33 13.67 21.61 0.30 -58.03 16 21 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 25 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 26 C -0.06 -2.16 9.69 22.25 0.22 -1.95 16 27 C -0.15 -1.02 6.63 30.77 0.20 -0.82 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 30 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.42 4.95 8.47 -92.71 -0.79 4.16 16 34 H 0.13 1.90 8.08 -2.39 -0.02 1.88 16 35 H 0.13 1.98 8.08 -2.39 -0.02 1.97 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 38 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 40 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 41 H 0.11 0.74 7.91 -2.39 -0.02 0.72 16 42 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -89.79 365.44 3.55 -86.24 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.27 Total: 21.69 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 4.77 Total: -32.68 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.78 Total: -80.08 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.74 Total: -41.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -89.79 3.55 -86.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854796156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.026 kcal (2) G-P(sol) polarization free energy of solvation -89.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds