Wall clock time and date at job start Tue Mar 31 2020 13:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27641 * 125.76456 * 2 1 4 4 O 1.41379 * 113.17106 * 180.32342 * 3 2 1 5 5 C 1.44254 * 107.50511 * 342.63587 * 4 3 2 6 6 H 1.08995 * 111.04588 * 143.19230 * 5 4 3 7 7 C 1.53007 * 111.00645 * 267.03836 * 5 4 3 8 8 N 1.46499 * 109.47124 * 292.15946 * 7 5 4 9 9 C 1.34782 * 119.99774 * 179.97438 * 8 7 5 10 10 O 1.21283 * 119.99856 * 0.02562 * 9 8 7 11 11 C 1.50692 * 120.00041 * 180.02562 * 9 8 7 12 12 C 1.50696 * 109.47564 * 180.02562 * 11 9 8 13 13 C 1.38308 * 119.92816 * 269.73167 * 12 11 9 14 14 C 1.38098 * 120.06519 * 179.72605 * 13 12 11 15 15 C 1.38877 * 119.93289 * 0.53764 * 14 13 12 16 16 O 1.35750 * 120.06948 * 179.75343 * 15 14 13 17 17 C 1.34829 * 116.99969 * 174.44161 * 16 15 14 18 18 H 1.07997 * 120.00068 * 5.06291 * 17 16 15 19 19 C 1.38655 * 120.00307 * 185.05601 * 17 16 15 20 20 N 1.31558 * 119.99789 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00450 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47172 * 60.00018 * 21 19 17 23 23 H 1.48493 * 109.47248 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47017 * 300.00145 * 21 19 17 25 25 C 1.38877 * 119.86152 * 359.73155 * 15 14 13 26 26 C 1.38095 * 119.93294 * 359.97438 * 25 15 14 27 27 C 1.51676 * 125.76850 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47014 * 269.99659 * 1 2 3 29 29 H 1.08997 * 109.47156 * 29.99999 * 1 2 3 30 30 H 1.08999 * 109.46728 * 149.99783 * 1 2 3 31 31 H 1.09009 * 109.46976 * 52.15950 * 7 5 4 32 32 H 1.09001 * 109.47213 * 172.15958 * 7 5 4 33 33 H 0.96997 * 120.00099 * 0.02562 * 8 7 5 34 34 H 1.09002 * 109.47173 * 300.00513 * 11 9 8 35 35 H 1.09004 * 109.47481 * 60.00104 * 11 9 8 36 36 H 1.07993 * 119.96558 * 359.97438 * 13 12 11 37 37 H 1.08006 * 120.03139 * 180.27302 * 14 13 12 38 38 H 0.96999 * 120.00136 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.03854 * 180.02562 * 25 15 14 40 40 H 1.08001 * 119.97115 * 180.02562 * 26 25 15 41 41 H 1.08997 * 110.80854 * 77.03273 * 27 2 1 42 42 H 1.08997 * 110.80785 * 313.51773 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7275 -0.0073 5 6 3.7719 -0.6499 0.3981 6 1 4.5760 -1.1402 -0.1506 7 6 3.9971 -0.7573 1.9077 8 7 5.3084 -0.1991 2.2467 9 6 5.7242 -0.1860 3.5287 10 8 5.0129 -0.6368 4.4015 11 6 7.0729 0.3886 3.8776 12 6 7.2948 0.2828 5.3643 13 6 6.9024 1.3160 6.1959 14 6 7.0993 1.2195 7.5593 15 6 7.7020 0.0885 8.0942 16 8 7.9014 -0.0071 9.4336 17 6 8.3849 -1.1767 9.8985 18 1 8.6722 -1.9552 9.2074 19 6 8.5134 -1.3799 11.2641 20 7 8.1630 -0.4317 12.1061 21 14 9.1838 -3.0000 11.9083 22 1 10.5569 -3.2112 11.3835 23 1 9.2217 -2.9650 13.3924 24 1 8.3066 -4.1116 11.4612 25 6 8.0999 -0.9449 7.2560 26 6 7.8948 -0.8451 5.8940 27 6 2.3936 -1.2307 -0.0006 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2192 -0.2016 2.4315 32 1 3.9596 -1.8047 2.2070 33 1 5.8771 0.1617 1.5487 34 1 7.8510 -0.1668 3.3540 35 1 7.1101 1.4360 3.5780 36 1 6.4380 2.1973 5.7789 37 1 6.7886 2.0248 8.2086 38 1 8.2525 -0.5740 13.0614 39 1 8.5686 -1.8259 7.6689 40 1 8.2037 -1.6485 5.2416 41 1 2.4344 -1.6780 -0.9936 42 1 2.0507 -1.9553 0.7380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854796157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:06 Heat of formation + Delta-G solvation = -49.744894 kcal Electronic energy + Delta-G solvation = -24996.289557 eV Core-core repulsion = 21135.953731 eV Total energy + Delta-G solvation = -3860.335826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48734 -40.96623 -40.27389 -38.23501 -36.03381 -34.69359 -34.40239 -33.07642 -32.01001 -31.77810 -29.30995 -28.69288 -27.45353 -26.40670 -23.64613 -23.01547 -22.56419 -21.26579 -20.72104 -19.85106 -18.87463 -18.15499 -17.86909 -17.28252 -16.69884 -16.42433 -16.23318 -16.12156 -15.78104 -15.72806 -15.50904 -15.09030 -14.64941 -14.59284 -14.43053 -14.22162 -13.90044 -13.78909 -13.61049 -13.48989 -13.37706 -12.96158 -12.77291 -12.66548 -12.46871 -12.42520 -12.31044 -12.24368 -12.14168 -11.55810 -11.18809 -10.98879 -10.75999 -10.42890 -10.15881 -9.77616 -8.91187 -8.47306 -6.15794 0.60242 0.65944 0.88469 1.33513 1.44950 1.50605 1.68531 2.01251 2.17724 2.32853 2.84399 3.15061 3.18367 3.42757 3.51517 3.58783 3.64106 3.84977 4.00795 4.05004 4.15456 4.21352 4.42272 4.48174 4.53415 4.58849 4.64456 4.69275 4.69796 4.76260 4.78695 4.80075 4.91252 5.07955 5.13939 5.29006 5.29518 5.39380 5.55357 5.70577 5.76897 6.02274 6.21613 6.46846 6.56463 6.96744 7.30230 7.78047 8.75948 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.002047 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.641459 B =13672.600747 C =13860.556693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.092 3.908 3 N -0.346 5.346 4 O -0.221 6.221 5 C 0.030 3.970 6 H 0.149 0.851 7 C 0.109 3.891 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.581 6.581 11 C -0.077 4.077 12 C -0.146 4.146 13 C -0.060 4.060 14 C -0.207 4.207 15 C 0.112 3.888 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.243 4.243 26 C -0.059 4.059 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.418 0.582 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -4.413 -30.929 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 N -0.091 5.091 4 O -0.237 6.237 5 C -0.029 4.029 6 H 0.167 0.833 7 C -0.016 4.016 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.460 6.460 11 C -0.117 4.117 12 C -0.147 4.147 13 C -0.078 4.078 14 C -0.226 4.226 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.179 1.179 23 H -0.195 1.195 24 H -0.183 1.183 25 C -0.262 4.262 26 C -0.077 4.077 27 C -0.182 4.182 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.255 0.745 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.759 -3.319 -29.980 32.025 hybrid contribution 0.524 -1.053 0.846 1.449 sum -10.235 -4.372 -29.134 31.188 Atomic orbital electron populations 1.20643 0.83130 1.05891 1.05108 1.27022 0.99625 0.92324 0.91128 1.77947 0.89482 1.25114 1.16580 1.91262 1.16564 1.28527 1.87326 1.24139 1.01018 0.83863 0.93904 0.83347 1.21719 0.85323 0.99680 0.94869 1.45763 1.19447 1.63284 1.08560 1.21214 0.89062 0.77931 0.81927 1.90749 1.58085 1.48004 1.49160 1.20523 0.94063 1.04972 0.92104 1.19252 1.04746 0.95320 0.95385 1.20865 0.96789 0.99049 0.91126 1.20424 1.07660 0.98100 0.96446 1.19924 0.94107 0.95385 0.84407 1.83938 1.74825 1.37068 1.18190 1.21796 1.42952 0.91977 0.92403 0.88183 1.26652 0.97322 1.03664 0.94641 1.70188 1.47087 1.35394 1.03324 0.84622 0.79126 0.74815 0.77462 1.17878 1.19483 1.18347 1.21240 1.09540 1.00521 0.94932 1.20944 0.96225 0.97220 0.93286 1.23223 0.89582 0.98267 1.07121 0.88478 0.89997 0.86445 0.94105 0.89584 0.74518 0.84934 0.85578 0.83989 0.87093 0.91828 0.86259 0.84086 0.84651 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.49 71.24 0.75 0.33 16 2 C 0.09 1.05 7.45 46.90 0.35 1.40 16 3 N -0.35 -6.90 12.45 -40.62 -0.51 -7.40 16 4 O -0.22 -4.30 12.24 -38.29 -0.47 -4.77 16 5 C 0.03 0.33 3.86 31.20 0.12 0.45 16 6 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 7 C 0.11 1.85 5.37 86.38 0.46 2.31 16 8 N -0.72 -12.79 5.55 -463.04 -2.57 -15.37 16 9 C 0.51 13.17 7.82 87.65 0.69 13.85 16 10 O -0.58 -21.77 16.03 -3.04 -0.05 -21.82 16 11 C -0.08 -1.66 5.83 29.10 0.17 -1.49 16 12 C -0.15 -4.87 4.38 -19.83 -0.09 -4.96 16 13 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 14 C -0.21 -9.68 9.99 22.39 0.22 -9.45 16 15 C 0.11 6.00 6.65 22.58 0.15 6.15 16 16 O -0.23 -14.84 9.76 -22.73 -0.22 -15.06 16 17 C -0.42 -25.30 9.49 67.92 0.64 -24.65 16 18 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 19 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 20 N -0.92 -58.50 13.67 21.61 0.30 -58.20 16 21 Si 1.02 44.30 29.55 68.60 2.03 46.33 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 C -0.24 -11.36 9.17 22.39 0.21 -11.16 16 26 C -0.06 -2.17 9.69 22.25 0.22 -1.96 16 27 C -0.14 -0.91 6.63 30.77 0.20 -0.71 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.42 4.84 8.47 -92.71 -0.79 4.05 16 34 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 35 H 0.13 2.02 8.08 -2.38 -0.02 2.00 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 40 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.13 0.40 7.92 -2.39 -0.02 0.38 16 Total: -1.00 -90.83 365.45 3.55 -87.28 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.27 Total: 21.98 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 4.77 Total: -32.96 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.78 Total: -80.98 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.74 Total: -41.66 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -90.83 3.55 -87.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854796157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.536 kcal (2) G-P(sol) polarization free energy of solvation -90.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds