Wall clock time and date at job start Tue Mar 31 2020 12:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48504 * 109.46833 * 269.99282 * 3 2 1 5 5 H 1.48490 * 109.47326 * 29.99593 * 3 2 1 6 6 H 1.48504 * 109.46844 * 149.99760 * 3 2 1 7 7 C 1.37878 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99540 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00424 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.49761 * 59.93261 * 9 7 2 11 11 C 1.53035 * 109.49896 * 180.02562 * 9 7 2 12 12 C 1.53043 * 109.53807 * 181.31992 * 11 9 7 13 13 C 1.53197 * 109.31209 * 298.63244 * 12 11 9 14 14 N 1.46921 * 108.77301 * 54.63758 * 13 12 11 15 15 C 1.34772 * 120.63323 * 126.37301 * 14 13 12 16 16 O 1.21706 * 120.00545 * 185.23919 * 15 14 13 17 17 C 1.46380 * 119.99700 * 5.23117 * 15 14 13 18 18 C 1.35247 * 119.99779 * 175.02399 * 17 15 14 19 19 C 1.46327 * 119.99954 * 180.27563 * 18 17 15 20 20 C 1.38091 * 125.82501 * 179.43832 * 19 18 17 21 21 C 1.39796 * 106.83905 * 179.84666 * 20 19 18 22 22 C 1.37731 * 106.89766 * 0.41588 * 21 20 19 23 23 C 1.47008 * 125.77070 * 179.77338 * 22 21 20 24 24 N 1.34779 * 119.99619 * 179.97438 * 23 22 21 25 25 O 1.21643 * 120.00054 * 359.97438 * 23 22 21 26 26 O 1.34578 * 125.82377 * 359.75252 * 19 18 17 27 27 C 1.46930 * 118.73745 * 306.64086 * 14 13 12 28 28 H 0.96998 * 120.00828 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46408 * 61.29919 * 11 9 7 30 30 H 1.09008 * 109.46009 * 301.33591 * 11 9 7 31 31 H 1.09006 * 109.49991 * 178.68230 * 12 11 9 32 32 H 1.08999 * 109.49644 * 58.58536 * 12 11 9 33 33 H 1.09003 * 109.58223 * 294.84789 * 13 12 11 34 34 H 1.09001 * 109.70042 * 174.49206 * 13 12 11 35 35 H 1.07991 * 119.99972 * 355.02640 * 17 15 14 36 36 H 1.08001 * 120.00257 * 0.02562 * 18 17 15 37 37 H 1.08001 * 126.58034 * 359.97438 * 20 19 18 38 38 H 1.08005 * 126.55418 * 180.15315 * 21 20 19 39 39 H 0.96997 * 119.99791 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99575 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.58576 * 173.14735 * 27 14 13 42 42 H 1.08994 * 109.58731 * 293.56862 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5571 -0.8889 11 6 2.2451 -3.6628 0.0018 12 6 1.4812 -4.9885 -0.0314 13 6 0.6049 -5.0998 1.2203 14 7 -0.2537 -3.9105 1.3036 15 6 -1.5902 -4.0356 1.4243 16 8 -2.2990 -3.0466 1.3964 17 6 -2.1894 -5.3610 1.5886 18 6 -3.5182 -5.4795 1.8104 19 6 -4.1162 -6.8041 1.9807 20 6 -5.4509 -7.0634 2.2224 21 6 -5.5838 -8.4521 2.3128 22 6 -4.3274 -8.9870 2.1329 23 6 -3.9918 -10.4181 2.1532 24 7 -2.7177 -10.8142 1.9625 25 8 -4.8639 -11.2448 2.3422 26 8 -3.4584 -7.9772 1.9344 27 6 0.3718 -2.5822 1.2469 28 1 -0.4851 0.8400 -0.0004 29 1 2.8556 -3.6180 0.9037 30 1 2.8881 -3.5921 -0.8756 31 1 2.1900 -5.8164 -0.0541 32 1 0.8517 -5.0234 -0.9205 33 1 1.2382 -5.1562 2.1057 34 1 -0.0148 -5.9942 1.1566 35 1 -1.5703 -6.2441 1.5328 36 1 -4.1374 -4.5964 1.8658 37 1 -6.2408 -6.3335 2.3205 38 1 -6.4964 -9.0005 2.4937 39 1 -2.0222 -10.1549 1.8122 40 1 -2.4963 -11.7585 1.9756 41 1 -0.4019 -1.8158 1.1983 42 1 0.9854 -2.4291 2.1345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:22 Heat of formation + Delta-G solvation = -47.116424 kcal Electronic energy + Delta-G solvation = -25757.191181 eV Core-core repulsion = 21896.969334 eV Total energy + Delta-G solvation = -3860.221847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.88052 -39.60155 -39.47631 -36.87441 -34.40760 -33.86478 -33.41528 -33.23511 -31.83007 -30.03676 -29.27187 -25.83417 -25.05821 -24.02567 -22.29162 -21.95044 -21.60662 -20.55436 -19.43970 -18.73186 -18.12276 -17.32699 -17.25595 -16.70914 -16.30929 -15.65725 -15.24643 -14.79651 -14.73102 -14.49340 -14.40611 -13.78316 -13.61403 -13.44723 -13.40418 -13.07339 -12.74092 -12.62153 -12.24228 -12.14220 -11.92454 -11.02313 -10.94250 -10.87034 -10.75058 -10.53859 -10.43759 -10.28395 -10.25811 -10.17455 -9.94316 -9.45133 -9.16328 -8.95755 -8.47208 -8.36406 -7.79280 -6.02921 -4.12112 0.16956 1.31855 2.19573 2.41484 2.78740 3.09423 3.28250 3.36096 3.38078 3.58664 3.69577 4.28432 4.40231 4.52013 4.58038 4.84194 5.05672 5.23474 5.26739 5.28649 5.38777 5.43414 5.57998 5.61201 5.75659 5.91884 6.03586 6.11140 6.13365 6.22858 6.25277 6.50767 6.55377 6.61808 6.80190 6.87688 6.92343 7.08507 7.20735 7.59950 7.68689 7.82727 7.95280 8.16807 8.34430 8.74079 8.92260 9.53795 11.02251 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.002553 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.383940 B =10966.942127 C =11926.564687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.105 3.895 14 N -0.596 5.596 15 C 0.531 3.469 16 O -0.534 6.534 17 C -0.161 4.161 18 C -0.034 4.034 19 C 0.053 3.947 20 C -0.193 4.193 21 C -0.111 4.111 22 C -0.089 4.089 23 C 0.612 3.388 24 N -0.843 5.843 25 O -0.525 6.525 26 O -0.155 6.155 27 C 0.111 3.889 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.408 0.592 40 H 0.410 0.590 41 H 0.125 0.875 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -18.683 4.525 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.018 4.018 14 N -0.328 5.328 15 C 0.319 3.681 16 O -0.413 6.413 17 C -0.182 4.182 18 C -0.053 4.053 19 C 0.001 3.999 20 C -0.212 4.212 21 C -0.132 4.132 22 C -0.142 4.142 23 C 0.397 3.603 24 N -0.406 5.406 25 O -0.402 6.402 26 O -0.051 6.051 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.238 0.762 40 H 0.241 0.759 41 H 0.143 0.857 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.939 -18.455 4.602 19.925 hybrid contribution 0.931 0.773 -0.098 1.214 sum -5.008 -17.682 4.504 18.921 Atomic orbital electron populations 1.69880 1.05724 1.26895 1.49240 1.25062 0.94895 0.99290 0.94810 0.86588 0.79804 0.83466 0.78121 1.20668 1.21158 1.19913 1.21067 0.92910 0.90073 1.51956 0.92337 1.18894 0.92633 0.92371 0.94083 0.95286 1.21633 0.98579 0.94026 1.00658 1.21955 0.98629 0.99213 0.97441 1.21745 0.93548 0.87810 0.98705 1.48436 1.05224 1.09225 1.69917 1.18111 0.82804 0.88608 0.78584 1.90850 1.60562 1.39320 1.50566 1.23556 0.95777 0.98481 1.00345 1.21576 0.95524 0.90853 0.97376 1.21411 0.90933 0.84550 1.02996 1.22244 0.95794 0.96171 1.07028 1.22109 0.97283 0.94025 0.99776 1.22289 0.89534 0.87827 1.14534 1.16556 0.83120 0.84440 0.76139 1.43697 1.09113 1.12795 1.75039 1.90918 1.47865 1.51340 1.50110 1.84023 1.37581 1.14194 1.69329 1.22263 0.98868 0.81106 0.98700 0.92602 0.93129 0.92936 0.92114 0.92075 0.91850 0.90987 0.85008 0.81665 0.81714 0.81825 0.76243 0.75871 0.85745 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 11.39 55.43 0.63 -24.62 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.83 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.94 2.24 -91.88 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 13 C 0.11 1.52 6.32 -3.71 -0.02 1.49 16 14 N -0.60 -11.37 2.98 -174.68 -0.52 -11.89 16 15 C 0.53 10.04 7.61 -12.99 -0.10 9.94 16 16 O -0.53 -12.36 15.66 5.18 0.08 -12.28 16 17 C -0.16 -2.19 8.99 -37.37 -0.34 -2.53 16 18 C -0.03 -0.41 9.64 -37.40 -0.36 -0.77 16 19 C 0.05 0.58 7.02 -36.38 -0.26 0.33 16 20 C -0.19 -1.85 10.88 -39.05 -0.42 -2.27 16 21 C -0.11 -1.09 10.64 -39.18 -0.42 -1.51 16 22 C -0.09 -0.93 7.16 -36.21 -0.26 -1.19 16 23 C 0.61 6.14 8.07 -12.71 -0.10 6.04 16 24 N -0.84 -5.17 8.87 30.34 0.27 -4.90 16 25 O -0.52 -6.87 17.70 5.24 0.09 -6.78 16 26 O -0.16 -1.63 10.01 3.88 0.04 -1.59 16 27 C 0.11 2.59 5.39 -3.93 -0.02 2.57 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.81 5.37 -51.93 -0.28 0.53 16 35 H 0.13 1.45 5.62 -52.49 -0.30 1.16 16 36 H 0.17 2.02 7.53 -52.49 -0.40 1.63 16 37 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.41 1.81 8.58 -40.82 -0.35 1.46 16 40 H 0.41 1.76 8.93 -40.82 -0.36 1.39 16 41 H 0.12 3.43 5.10 -51.93 -0.26 3.16 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -33.30 356.78 -7.54 -40.84 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.30 Total: 4.07 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.19 Total: -4.13 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.38 Total: -41.41 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.21 Total: -20.65 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.30 -7.54 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.278 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds