Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48504 * 109.46833 * 269.99282 * 3 2 1 5 5 H 1.48490 * 109.47326 * 29.99593 * 3 2 1 6 6 H 1.48504 * 109.46844 * 149.99760 * 3 2 1 7 7 C 1.37878 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99540 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00424 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.49761 * 59.93261 * 9 7 2 11 11 C 1.53035 * 109.49896 * 180.02562 * 9 7 2 12 12 C 1.53043 * 109.53807 * 181.31992 * 11 9 7 13 13 C 1.53197 * 109.31209 * 298.63244 * 12 11 9 14 14 N 1.46921 * 108.77301 * 54.63758 * 13 12 11 15 15 C 1.34772 * 120.63323 * 126.37301 * 14 13 12 16 16 O 1.21706 * 120.00545 * 185.23919 * 15 14 13 17 17 C 1.46380 * 119.99700 * 5.23117 * 15 14 13 18 18 C 1.35247 * 119.99779 * 175.02399 * 17 15 14 19 19 C 1.46327 * 119.99954 * 180.27563 * 18 17 15 20 20 C 1.38091 * 125.82501 * 179.43832 * 19 18 17 21 21 C 1.39796 * 106.83905 * 179.84666 * 20 19 18 22 22 C 1.37731 * 106.89766 * 0.41588 * 21 20 19 23 23 C 1.47008 * 125.77070 * 179.77338 * 22 21 20 24 24 N 1.34779 * 119.99619 * 179.97438 * 23 22 21 25 25 O 1.21643 * 120.00054 * 359.97438 * 23 22 21 26 26 O 1.34578 * 125.82377 * 359.75252 * 19 18 17 27 27 C 1.46930 * 118.73745 * 306.64086 * 14 13 12 28 28 H 0.96998 * 120.00828 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46408 * 61.29919 * 11 9 7 30 30 H 1.09008 * 109.46009 * 301.33591 * 11 9 7 31 31 H 1.09006 * 109.49991 * 178.68230 * 12 11 9 32 32 H 1.08999 * 109.49644 * 58.58536 * 12 11 9 33 33 H 1.09003 * 109.58223 * 294.84789 * 13 12 11 34 34 H 1.09001 * 109.70042 * 174.49206 * 13 12 11 35 35 H 1.07991 * 119.99972 * 355.02640 * 17 15 14 36 36 H 1.08001 * 120.00257 * 0.02562 * 18 17 15 37 37 H 1.08001 * 126.58034 * 359.97438 * 20 19 18 38 38 H 1.08005 * 126.55418 * 180.15315 * 21 20 19 39 39 H 0.96997 * 119.99791 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99575 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.58576 * 173.14735 * 27 14 13 42 42 H 1.08994 * 109.58731 * 293.56862 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6238 -2.5571 -0.8889 11 6 2.2451 -3.6628 0.0018 12 6 1.4812 -4.9885 -0.0314 13 6 0.6049 -5.0998 1.2203 14 7 -0.2537 -3.9105 1.3036 15 6 -1.5902 -4.0356 1.4243 16 8 -2.2990 -3.0466 1.3964 17 6 -2.1894 -5.3610 1.5886 18 6 -3.5182 -5.4795 1.8104 19 6 -4.1162 -6.8041 1.9807 20 6 -5.4509 -7.0634 2.2224 21 6 -5.5838 -8.4521 2.3128 22 6 -4.3274 -8.9870 2.1329 23 6 -3.9918 -10.4181 2.1532 24 7 -2.7177 -10.8142 1.9625 25 8 -4.8639 -11.2448 2.3422 26 8 -3.4584 -7.9772 1.9344 27 6 0.3718 -2.5822 1.2469 28 1 -0.4851 0.8400 -0.0004 29 1 2.8556 -3.6180 0.9037 30 1 2.8881 -3.5921 -0.8756 31 1 2.1900 -5.8164 -0.0541 32 1 0.8517 -5.0234 -0.9205 33 1 1.2382 -5.1562 2.1057 34 1 -0.0148 -5.9942 1.1566 35 1 -1.5703 -6.2441 1.5328 36 1 -4.1374 -4.5964 1.8658 37 1 -6.2408 -6.3335 2.3205 38 1 -6.4964 -9.0005 2.4937 39 1 -2.0222 -10.1549 1.8122 40 1 -2.4963 -11.7585 1.9756 41 1 -0.4019 -1.8158 1.1983 42 1 0.9854 -2.4291 2.1345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -71.117502 kcal Electronic energy + Delta-G solvation = -25758.231945 eV Core-core repulsion = 21896.969334 eV Total energy + Delta-G solvation = -3861.262612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.67285 -41.02582 -40.30975 -38.42512 -35.40415 -35.16244 -34.67025 -34.07425 -33.43693 -31.63119 -30.27303 -27.36862 -26.64791 -25.18835 -23.51159 -23.13504 -22.58970 -21.51220 -20.83798 -19.54848 -19.39195 -18.68202 -18.14312 -17.94312 -17.50320 -16.91614 -16.66724 -16.27073 -15.97423 -15.56287 -15.44011 -15.22581 -14.99619 -14.61832 -14.37670 -14.19796 -14.12281 -13.92580 -13.61205 -13.44979 -13.33682 -12.88607 -12.62612 -12.28005 -12.20530 -11.78837 -11.70661 -11.69661 -11.61532 -11.16581 -11.04214 -10.94735 -10.84456 -10.67132 -10.50695 -9.49202 -9.14341 -8.10603 -6.27850 -0.74932 0.44302 1.37306 1.40575 1.41622 1.49209 1.52165 2.02425 2.18988 2.36860 2.42308 2.46151 3.17146 3.34780 3.76817 3.82572 3.84831 4.02169 4.15805 4.20551 4.36503 4.48951 4.56133 4.62077 4.73597 4.79150 4.82493 4.86063 4.94934 5.09821 5.11600 5.26686 5.29939 5.30469 5.39866 5.55227 5.60624 5.64967 5.79370 5.90937 6.01614 6.25855 6.33478 6.66318 6.85402 7.07632 7.28793 7.42580 8.92634 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.002553 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.383940 B =10966.942127 C =11926.564687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.037 3.963 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.100 3.900 14 N -0.603 5.603 15 C 0.524 3.476 16 O -0.594 6.594 17 C -0.176 4.176 18 C -0.004 4.004 19 C 0.031 3.969 20 C -0.175 4.175 21 C -0.121 4.121 22 C -0.088 4.088 23 C 0.611 3.389 24 N -0.821 5.821 25 O -0.560 6.560 26 O -0.152 6.152 27 C 0.124 3.876 28 H 0.260 0.740 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.187 0.813 38 H 0.177 0.823 39 H 0.420 0.580 40 H 0.421 0.579 41 H 0.078 0.922 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -21.403 5.089 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.018 3.982 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.022 4.022 14 N -0.333 5.333 15 C 0.315 3.685 16 O -0.477 6.477 17 C -0.197 4.197 18 C -0.023 4.023 19 C -0.021 4.021 20 C -0.194 4.194 21 C -0.142 4.142 22 C -0.141 4.141 23 C 0.395 3.605 24 N -0.384 5.384 25 O -0.441 6.441 26 O -0.047 6.047 27 C 0.001 3.999 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.204 0.796 38 H 0.194 0.806 39 H 0.251 0.749 40 H 0.254 0.746 41 H 0.096 0.904 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.969 -21.222 5.157 22.398 hybrid contribution 0.579 1.522 -0.270 1.650 sum -4.390 -19.700 4.887 20.767 Atomic orbital electron populations 1.70083 1.07383 1.27259 1.50635 1.25898 0.95568 1.02915 0.94651 0.85573 0.78814 0.79177 0.78218 1.20190 1.21344 1.18599 1.21523 0.93290 0.91521 1.51082 0.91989 1.18834 0.93146 0.93888 0.92349 0.99696 1.21529 0.97680 0.94290 1.00948 1.21927 0.99036 0.98160 0.97378 1.22132 0.93763 0.87123 0.99149 1.48441 1.06059 1.09025 1.69791 1.18930 0.82420 0.90085 0.77083 1.90813 1.61778 1.41798 1.53290 1.23238 0.96477 0.96183 1.03764 1.21576 0.95000 0.91578 0.94175 1.21193 0.91435 0.84111 1.05363 1.22591 0.95738 0.96597 1.04463 1.22390 0.97790 0.94227 0.99778 1.22524 0.89860 0.88078 1.13659 1.16578 0.83820 0.83974 0.76105 1.43565 1.08063 1.13891 1.72927 1.90907 1.49106 1.51998 1.52105 1.83995 1.37469 1.13949 1.69334 1.21635 0.97316 0.82903 0.98024 0.93124 0.92342 0.93072 0.87515 0.93162 0.89885 0.86846 0.81762 0.82258 0.79551 0.80579 0.74894 0.74578 0.90415 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.42 11.39 21.45 0.24 -55.18 16 2 C 0.01 0.51 5.31 84.65 0.45 0.96 16 3 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -29.24 8.56 25.60 0.22 -29.03 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 1.84 2.24 -11.61 -0.03 1.82 16 10 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.11 -3.98 5.11 30.62 0.16 -3.82 16 12 C -0.13 -3.49 6.08 30.67 0.19 -3.30 16 13 C 0.10 2.58 6.32 86.37 0.55 3.13 16 14 N -0.60 -23.10 2.98 -824.79 -2.46 -25.56 16 15 C 0.52 20.18 7.61 86.36 0.66 20.84 16 16 O -0.59 -29.15 15.66 -4.37 -0.07 -29.21 16 17 C -0.18 -4.54 8.99 23.70 0.21 -4.33 16 18 C 0.00 -0.08 9.64 23.69 0.23 0.15 16 19 C 0.03 0.59 7.02 24.34 0.17 0.77 16 20 C -0.18 -2.88 10.88 22.61 0.25 -2.64 16 21 C -0.12 -2.08 10.64 22.53 0.24 -1.84 16 22 C -0.09 -1.60 7.16 24.45 0.18 -1.43 16 23 C 0.61 10.82 8.07 86.54 0.70 11.51 16 24 N -0.82 -7.60 8.87 -176.18 -1.56 -9.17 16 25 O -0.56 -13.78 17.70 -4.17 -0.07 -13.85 16 26 O -0.15 -2.72 10.01 -9.04 -0.09 -2.81 16 27 C 0.12 6.05 5.39 86.22 0.46 6.52 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 2.02 5.37 -2.39 -0.01 2.01 16 35 H 0.17 3.01 5.62 -2.92 -0.02 3.00 16 36 H 0.16 3.88 7.53 -2.91 -0.02 3.85 16 37 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.42 2.22 8.58 -92.71 -0.80 1.42 16 40 H 0.42 2.39 8.93 -92.71 -0.83 1.57 16 41 H 0.08 4.59 5.10 -2.38 -0.01 4.58 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -78.56 356.78 2.10 -76.46 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.54 Total: 14.02 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.62 Total: -0.71 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -3.77 Total: -89.90 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.23 Total: -45.88 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -78.56 2.10 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.342 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds