Wall clock time and date at job start Tue Mar 31 2020 12:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47137 * 274.97344 * 3 2 1 5 5 H 1.48508 * 109.46594 * 34.97013 * 3 2 1 6 6 H 1.48502 * 109.47192 * 154.96615 * 3 2 1 7 7 C 1.37881 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 354.99134 * 7 2 1 9 9 C 1.50706 * 119.99926 * 174.99178 * 7 2 1 10 10 H 1.09003 * 109.49745 * 334.98049 * 9 7 2 11 11 C 1.53040 * 109.52173 * 214.89850 * 9 7 2 12 12 C 1.53043 * 109.53211 * 178.66734 * 11 9 7 13 13 C 1.52758 * 109.38613 * 61.24452 * 12 11 9 14 14 N 1.46930 * 109.00367 * 305.58065 * 13 12 11 15 15 C 1.34771 * 120.63084 * 233.58440 * 14 13 12 16 16 O 1.21713 * 119.99892 * 174.47400 * 15 14 13 17 17 C 1.46371 * 120.00206 * 354.74420 * 15 14 13 18 18 C 1.35248 * 120.00352 * 184.70057 * 17 15 14 19 19 C 1.46327 * 120.00270 * 180.02562 * 18 17 15 20 20 C 1.38086 * 125.82484 * 180.02562 * 19 18 17 21 21 C 1.39800 * 106.83782 * 179.97438 * 20 19 18 22 22 C 1.37722 * 106.89948 * 359.97438 * 21 20 19 23 23 C 1.47002 * 125.77395 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00523 * 180.02562 * 23 22 21 25 25 O 1.21653 * 120.00017 * 0.02562 * 23 22 21 26 26 O 1.34577 * 125.82046 * 359.68327 * 19 18 17 27 27 C 1.46929 * 118.73612 * 53.31472 * 14 13 12 28 28 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.46062 * 298.68751 * 11 9 7 30 30 H 1.08999 * 109.45941 * 58.66122 * 11 9 7 31 31 H 1.09004 * 109.49422 * 181.32108 * 12 11 9 32 32 H 1.09000 * 109.49954 * 301.41173 * 12 11 9 33 33 H 1.09001 * 109.50688 * 185.70520 * 13 12 11 34 34 H 1.08992 * 109.43308 * 65.41696 * 13 12 11 35 35 H 1.08006 * 119.99648 * 4.69934 * 17 15 14 36 36 H 1.07996 * 119.99984 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.57942 * 359.97438 * 20 19 18 38 38 H 1.07998 * 126.54980 * 180.02562 * 21 20 19 39 39 H 0.97002 * 119.99684 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00116 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.58918 * 66.42625 * 27 14 13 42 42 H 1.09006 * 109.58376 * 186.70777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5029 2.6201 0.8025 6 1 3.5953 1.4122 0.5924 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0807 9 6 3.5073 -1.1965 -0.1145 10 1 3.8356 -0.2856 -0.6151 11 6 3.9568 -2.4149 -0.9241 12 6 5.4804 -2.3997 -1.0683 13 6 6.1214 -2.4755 0.3162 14 7 5.5834 -1.3938 1.1525 15 6 6.4107 -0.5357 1.7813 16 8 5.9541 0.4152 2.3885 17 6 7.8586 -0.7438 1.7290 18 6 8.6835 0.0606 2.4373 19 6 10.1310 -0.1471 2.3845 20 6 11.0795 0.5985 3.0562 21 6 12.3266 0.0609 2.7243 22 6 12.0938 -0.9902 1.8654 23 6 13.1217 -1.8485 1.2591 24 7 12.7618 -2.8486 0.4304 25 8 14.2975 -1.6561 1.5054 26 8 10.7645 -1.1016 1.6782 27 6 4.1261 -1.2620 1.2854 28 1 -0.4850 0.8400 -0.0004 29 1 3.6497 -3.3257 -0.4104 30 1 3.4984 -2.3833 -1.9125 31 1 5.7979 -3.2549 -1.6649 32 1 5.7901 -1.4775 -1.5600 33 1 7.2017 -2.3630 0.2238 34 1 5.8898 -3.4386 0.7708 35 1 8.2682 -1.5398 1.1247 36 1 8.2740 0.8568 3.0411 37 1 10.8936 1.4362 3.7119 38 1 13.2888 0.4038 3.0751 39 1 11.8243 -3.0018 0.2338 40 1 13.4401 -3.4152 0.0307 41 1 3.7284 -2.1241 1.8207 42 1 3.8902 -0.3504 1.8345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:27 Heat of formation + Delta-G solvation = -46.888282 kcal Electronic energy + Delta-G solvation = -25791.088820 eV Core-core repulsion = 21930.876866 eV Total energy + Delta-G solvation = -3860.211954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98463 -39.85457 -39.59425 -37.12726 -34.51037 -34.00637 -33.46887 -33.30390 -31.95273 -30.68561 -29.48052 -26.00087 -25.26070 -24.15419 -22.37982 -21.97339 -21.76465 -20.64124 -19.46180 -18.82875 -18.39625 -17.52437 -17.35828 -16.81770 -16.80866 -15.89618 -15.48697 -14.94708 -14.84423 -14.67874 -14.23148 -13.94570 -13.84575 -13.54392 -13.50594 -13.31356 -12.85816 -12.68727 -12.56665 -12.38116 -12.27062 -11.30778 -11.07327 -10.94623 -10.88969 -10.66983 -10.61332 -10.35084 -10.26891 -10.12859 -9.78286 -9.72321 -9.38103 -9.12645 -8.66815 -8.50861 -8.08451 -6.14857 -4.16120 0.03709 1.19640 2.09118 2.27338 2.70584 3.01060 3.27228 3.32164 3.40303 3.43969 3.51404 4.14137 4.40396 4.42112 4.46876 4.67830 4.87668 5.08808 5.15481 5.18117 5.26632 5.28990 5.46292 5.48504 5.61949 5.76640 5.87150 5.94646 5.99892 6.09167 6.15285 6.22744 6.36338 6.41057 6.54604 6.62004 6.73435 6.79600 6.82516 7.21553 7.31096 7.61482 7.67989 7.77837 8.39488 8.46865 8.90026 9.48433 10.97404 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.002753 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.733003 B =10168.195333 C =11011.675647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.007 3.993 10 H 0.035 0.965 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.107 3.893 14 N -0.599 5.599 15 C 0.534 3.466 16 O -0.544 6.544 17 C -0.166 4.166 18 C -0.026 4.026 19 C 0.048 3.952 20 C -0.190 4.190 21 C -0.112 4.112 22 C -0.085 4.085 23 C 0.612 3.388 24 N -0.843 5.843 25 O -0.523 6.523 26 O -0.155 6.155 27 C 0.110 3.890 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.408 0.592 40 H 0.410 0.590 41 H 0.063 0.937 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.854 -5.291 1.668 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.175 1.175 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.013 4.013 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.177 4.177 13 C -0.016 4.016 14 N -0.330 5.330 15 C 0.323 3.677 16 O -0.424 6.424 17 C -0.187 4.187 18 C -0.046 4.046 19 C -0.004 4.004 20 C -0.209 4.209 21 C -0.133 4.133 22 C -0.138 4.138 23 C 0.397 3.603 24 N -0.406 5.406 25 O -0.401 6.401 26 O -0.051 6.051 27 C -0.011 4.011 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.238 0.762 40 H 0.242 0.758 41 H 0.081 0.919 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.972 -4.673 2.053 24.509 hybrid contribution 0.150 0.610 -0.287 0.690 sum 24.122 -4.064 1.766 24.525 Atomic orbital electron populations 1.69900 1.06386 1.27179 1.49715 1.25075 0.94691 0.99104 0.93853 0.86991 0.81532 0.83740 0.78387 1.20551 1.21302 1.17535 1.20881 0.88430 0.94651 1.51353 0.90684 1.19470 0.96469 0.94581 0.90795 0.94690 1.21566 0.91816 0.99815 1.01031 1.21946 0.98604 1.01650 0.95471 1.21704 0.97760 0.90421 0.91759 1.48426 1.08634 1.29470 1.46470 1.18170 0.86497 0.82883 0.80192 1.90823 1.77833 1.29571 1.44175 1.23468 0.94023 1.00613 1.00611 1.21582 0.85275 0.99202 0.98535 1.21356 0.93121 0.90138 0.95770 1.22257 0.91004 1.03292 1.04308 1.22121 0.99901 0.94541 0.96729 1.22323 0.80836 1.03379 1.07263 1.16555 0.86065 0.79450 0.78258 1.43696 1.13221 1.34281 1.49401 1.90927 1.16491 1.70801 1.61863 1.84024 1.18177 1.46455 1.56428 1.22554 0.74658 1.02377 1.01471 0.92519 0.92696 0.92069 0.91562 0.92087 0.90677 0.91408 0.84747 0.81705 0.81683 0.81741 0.76248 0.75805 0.91888 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.72 26.62 -169.99 -4.53 17.20 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -6.32 5.98 56.52 0.34 -5.99 16 7 C -0.52 -13.79 8.87 -34.44 -0.31 -14.10 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.01 0.15 1.79 -91.65 -0.16 -0.02 16 10 H 0.03 0.82 5.60 -51.93 -0.29 0.53 16 11 C -0.10 -1.88 5.15 -26.69 -0.14 -2.01 16 12 C -0.14 -1.90 6.06 -26.83 -0.16 -2.06 16 13 C 0.11 1.35 6.29 -3.93 -0.02 1.33 16 14 N -0.60 -10.19 2.98 -174.69 -0.52 -10.71 16 15 C 0.53 9.07 7.61 -12.99 -0.10 8.97 16 16 O -0.54 -11.39 15.66 5.18 0.08 -11.31 16 17 C -0.17 -2.03 8.99 -37.38 -0.34 -2.36 16 18 C -0.03 -0.29 9.64 -37.40 -0.36 -0.65 16 19 C 0.05 0.48 7.02 -36.39 -0.26 0.22 16 20 C -0.19 -1.64 10.88 -39.05 -0.42 -2.06 16 21 C -0.11 -1.02 10.64 -39.19 -0.42 -1.43 16 22 C -0.09 -0.82 7.16 -36.22 -0.26 -1.08 16 23 C 0.61 5.73 8.07 -12.71 -0.10 5.63 16 24 N -0.84 -4.63 8.87 30.34 0.27 -4.36 16 25 O -0.52 -6.55 17.70 5.23 0.09 -6.45 16 26 O -0.16 -1.48 10.01 3.86 0.04 -1.44 16 27 C 0.11 2.28 5.52 -3.71 -0.02 2.26 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.72 5.37 -51.93 -0.28 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.13 1.29 5.63 -52.48 -0.30 0.99 16 36 H 0.17 1.79 7.53 -52.49 -0.40 1.39 16 37 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.41 1.53 8.58 -40.82 -0.35 1.18 16 40 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.08 2.00 5.88 -51.93 -0.31 1.69 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -34.59 354.00 -6.91 -41.50 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.28 Total: 1.63 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -3.17 Total: -5.31 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.52 Total: -41.14 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.21 Total: -19.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.53 Total: 17.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.59 -6.91 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.387 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds