Wall clock time and date at job start Tue Mar 31 2020 12:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47137 * 274.97344 * 3 2 1 5 5 H 1.48508 * 109.46594 * 34.97013 * 3 2 1 6 6 H 1.48502 * 109.47192 * 154.96615 * 3 2 1 7 7 C 1.37881 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 354.99134 * 7 2 1 9 9 C 1.50706 * 119.99926 * 174.99178 * 7 2 1 10 10 H 1.09003 * 109.49745 * 334.98049 * 9 7 2 11 11 C 1.53040 * 109.52173 * 214.89850 * 9 7 2 12 12 C 1.53043 * 109.53211 * 178.66734 * 11 9 7 13 13 C 1.52758 * 109.38613 * 61.24452 * 12 11 9 14 14 N 1.46930 * 109.00367 * 305.58065 * 13 12 11 15 15 C 1.34771 * 120.63084 * 233.58440 * 14 13 12 16 16 O 1.21713 * 119.99892 * 174.47400 * 15 14 13 17 17 C 1.46371 * 120.00206 * 354.74420 * 15 14 13 18 18 C 1.35248 * 120.00352 * 184.70057 * 17 15 14 19 19 C 1.46327 * 120.00270 * 180.02562 * 18 17 15 20 20 C 1.38086 * 125.82484 * 180.02562 * 19 18 17 21 21 C 1.39800 * 106.83782 * 179.97438 * 20 19 18 22 22 C 1.37722 * 106.89948 * 359.97438 * 21 20 19 23 23 C 1.47002 * 125.77395 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00523 * 180.02562 * 23 22 21 25 25 O 1.21653 * 120.00017 * 0.02562 * 23 22 21 26 26 O 1.34577 * 125.82046 * 359.68327 * 19 18 17 27 27 C 1.46929 * 118.73612 * 53.31472 * 14 13 12 28 28 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.46062 * 298.68751 * 11 9 7 30 30 H 1.08999 * 109.45941 * 58.66122 * 11 9 7 31 31 H 1.09004 * 109.49422 * 181.32108 * 12 11 9 32 32 H 1.09000 * 109.49954 * 301.41173 * 12 11 9 33 33 H 1.09001 * 109.50688 * 185.70520 * 13 12 11 34 34 H 1.08992 * 109.43308 * 65.41696 * 13 12 11 35 35 H 1.08006 * 119.99648 * 4.69934 * 17 15 14 36 36 H 1.07996 * 119.99984 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.57942 * 359.97438 * 20 19 18 38 38 H 1.07998 * 126.54980 * 180.02562 * 21 20 19 39 39 H 0.97002 * 119.99684 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00116 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.58918 * 66.42625 * 27 14 13 42 42 H 1.09006 * 109.58376 * 186.70777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5029 2.6201 0.8025 6 1 3.5953 1.4122 0.5924 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0807 9 6 3.5073 -1.1965 -0.1145 10 1 3.8356 -0.2856 -0.6151 11 6 3.9568 -2.4149 -0.9241 12 6 5.4804 -2.3997 -1.0683 13 6 6.1214 -2.4755 0.3162 14 7 5.5834 -1.3938 1.1525 15 6 6.4107 -0.5357 1.7813 16 8 5.9541 0.4152 2.3885 17 6 7.8586 -0.7438 1.7290 18 6 8.6835 0.0606 2.4373 19 6 10.1310 -0.1471 2.3845 20 6 11.0795 0.5985 3.0562 21 6 12.3266 0.0609 2.7243 22 6 12.0938 -0.9902 1.8654 23 6 13.1217 -1.8485 1.2591 24 7 12.7618 -2.8486 0.4304 25 8 14.2975 -1.6561 1.5054 26 8 10.7645 -1.1016 1.6782 27 6 4.1261 -1.2620 1.2854 28 1 -0.4850 0.8400 -0.0004 29 1 3.6497 -3.3257 -0.4104 30 1 3.4984 -2.3833 -1.9125 31 1 5.7979 -3.2549 -1.6649 32 1 5.7901 -1.4775 -1.5600 33 1 7.2017 -2.3630 0.2238 34 1 5.8898 -3.4386 0.7708 35 1 8.2682 -1.5398 1.1247 36 1 8.2740 0.8568 3.0411 37 1 10.8936 1.4362 3.7119 38 1 13.2888 0.4038 3.0751 39 1 11.8243 -3.0018 0.2338 40 1 13.4401 -3.4152 0.0307 41 1 3.7284 -2.1241 1.8207 42 1 3.8902 -0.3504 1.8345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:26 Heat of formation + Delta-G solvation = -72.751219 kcal Electronic energy + Delta-G solvation = -25792.210321 eV Core-core repulsion = 21930.876866 eV Total energy + Delta-G solvation = -3861.333455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.68519 -41.16493 -40.31824 -38.53832 -35.39419 -35.17375 -34.70770 -34.09194 -33.56011 -32.20619 -30.33375 -27.42295 -26.74354 -25.21420 -23.40064 -23.18250 -22.61226 -21.49484 -20.83064 -19.70713 -19.44882 -18.96733 -18.48153 -17.95963 -17.51542 -16.97860 -16.73826 -16.25115 -16.01659 -15.57422 -15.46600 -15.32654 -15.14964 -14.84195 -14.43908 -14.21950 -14.13828 -14.12108 -13.73852 -13.62540 -13.40246 -13.07434 -12.63647 -12.58211 -12.02588 -11.74135 -11.71356 -11.70260 -11.61585 -11.27411 -11.11466 -11.05677 -10.85351 -10.80908 -10.73507 -9.61640 -9.18542 -8.35510 -6.37432 -0.77736 0.41682 1.24666 1.32980 1.35900 1.45639 1.46937 2.01440 2.05807 2.28467 2.29371 2.44605 3.02952 3.29279 3.75421 3.78205 3.83566 3.98745 4.10277 4.17069 4.26370 4.46980 4.49858 4.53406 4.61171 4.71781 4.76226 4.79530 4.90125 4.98694 5.00605 5.05611 5.16589 5.27859 5.29700 5.42213 5.59357 5.59530 5.66807 5.73547 5.78291 6.25313 6.28140 6.51406 6.71601 7.06941 7.14744 7.29239 8.80884 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.002753 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.733003 B =10168.195333 C =11011.675647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.509 4.509 8 H 0.044 0.956 9 C 0.005 3.995 10 H 0.021 0.979 11 C -0.103 4.103 12 C -0.130 4.130 13 C 0.101 3.899 14 N -0.603 5.603 15 C 0.529 3.471 16 O -0.597 6.597 17 C -0.179 4.179 18 C 0.000 4.000 19 C 0.029 3.971 20 C -0.174 4.174 21 C -0.123 4.123 22 C -0.087 4.087 23 C 0.610 3.390 24 N -0.821 5.821 25 O -0.561 6.561 26 O -0.151 6.151 27 C 0.121 3.879 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.187 0.813 38 H 0.175 0.825 39 H 0.420 0.580 40 H 0.420 0.580 41 H 0.063 0.937 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.447 -6.237 1.053 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.177 4.177 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.180 1.180 7 C -0.548 4.548 8 H 0.062 0.938 9 C -0.015 4.015 10 H 0.040 0.960 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.334 5.334 15 C 0.320 3.680 16 O -0.480 6.480 17 C -0.200 4.200 18 C -0.020 4.020 19 C -0.023 4.023 20 C -0.193 4.193 21 C -0.143 4.143 22 C -0.140 4.140 23 C 0.394 3.606 24 N -0.384 5.384 25 O -0.442 6.442 26 O -0.047 6.047 27 C -0.001 4.001 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.205 0.795 38 H 0.193 0.807 39 H 0.251 0.749 40 H 0.254 0.746 41 H 0.082 0.918 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 27.574 -5.681 1.389 28.188 hybrid contribution -0.886 0.824 -0.061 1.211 sum 26.689 -4.856 1.328 27.159 Atomic orbital electron populations 1.70019 1.07854 1.27909 1.52406 1.25783 0.95269 1.02264 0.94335 0.86022 0.79833 0.80200 0.78591 1.19417 1.21576 1.18042 1.21224 0.91191 0.93099 1.49270 0.93815 1.19441 0.93435 0.96213 0.92417 0.96043 1.21473 0.95570 0.97515 0.99519 1.21904 0.94687 1.03347 0.96841 1.22081 0.99928 0.89698 0.90285 1.48407 1.06809 1.30795 1.47363 1.18899 0.88402 0.81729 0.78936 1.90794 1.79075 1.31752 1.46390 1.23217 0.90677 1.02897 1.03164 1.21598 0.85816 0.97891 0.96649 1.21211 0.92629 0.91229 0.97204 1.22597 0.90433 1.03019 1.03246 1.22393 1.00612 0.94568 0.96758 1.22502 0.80928 1.03443 1.07093 1.16599 0.85423 0.79967 0.78576 1.43568 1.14327 1.32870 1.47675 1.90915 1.17827 1.72005 1.63430 1.83997 1.17985 1.46334 1.56362 1.21942 0.77877 1.00674 0.99649 0.92500 0.92364 0.93032 0.87387 0.92527 0.86501 0.89525 0.81612 0.82060 0.79522 0.80707 0.74863 0.74596 0.91843 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 2 C 0.02 1.26 5.47 84.66 0.46 1.73 16 3 Si 0.93 46.61 26.62 68.60 1.83 48.44 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.26 -12.98 5.98 99.48 0.59 -12.39 16 7 C -0.51 -28.24 8.87 25.60 0.23 -28.02 16 8 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 9 C 0.00 0.21 1.79 -11.46 -0.02 0.19 16 10 H 0.02 1.01 5.60 -2.39 -0.01 1.00 16 11 C -0.10 -3.56 5.15 30.62 0.16 -3.40 16 12 C -0.13 -3.07 6.06 30.53 0.19 -2.88 16 13 C 0.10 2.15 6.29 86.22 0.54 2.69 16 14 N -0.60 -19.55 2.98 -824.80 -2.46 -22.01 16 15 C 0.53 17.29 7.61 86.36 0.66 17.94 16 16 O -0.60 -25.20 15.66 -4.39 -0.07 -25.27 16 17 C -0.18 -3.82 8.99 23.70 0.21 -3.61 16 18 C 0.00 0.00 9.64 23.69 0.23 0.23 16 19 C 0.03 0.48 7.02 24.34 0.17 0.65 16 20 C -0.17 -2.47 10.88 22.61 0.25 -2.22 16 21 C -0.12 -1.89 10.64 22.53 0.24 -1.65 16 22 C -0.09 -1.42 7.16 24.45 0.18 -1.24 16 23 C 0.61 9.93 8.07 86.54 0.70 10.62 16 24 N -0.82 -6.45 8.87 -176.17 -1.56 -8.01 16 25 O -0.56 -13.14 17.70 -4.20 -0.07 -13.21 16 26 O -0.15 -2.34 10.01 -9.11 -0.09 -2.43 16 27 C 0.12 5.08 5.52 86.36 0.48 5.56 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.57 5.37 -2.39 -0.01 1.55 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.17 2.36 5.63 -2.91 -0.02 2.34 16 36 H 0.16 3.23 7.53 -2.91 -0.02 3.21 16 37 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.42 1.53 8.58 -92.71 -0.80 0.73 16 40 H 0.42 1.90 8.93 -92.71 -0.83 1.07 16 41 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.05 2.38 5.88 -2.38 -0.01 2.36 16 Total: -1.00 -79.88 354.00 1.88 -77.99 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -0.65 Total: 6.31 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.66 Total: -3.40 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -3.72 Total: -88.42 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.23 Total: -40.92 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.83 Total: 48.44 kcal Total: -79.88 1.88 -77.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.243 kcal (2) G-P(sol) polarization free energy of solvation -79.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds