Wall clock time and date at job start Tue Mar 31 2020 12:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47386 * 240.00367 * 3 2 1 5 5 H 1.48508 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47568 * 120.00332 * 3 2 1 7 7 C 1.37871 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49569 * 299.93824 * 9 7 2 11 11 C 1.53034 * 109.52281 * 179.85795 * 9 7 2 12 12 C 1.53047 * 109.53796 * 178.66943 * 11 9 7 13 13 C 1.52760 * 109.38184 * 61.23515 * 12 11 9 14 14 N 1.46924 * 109.01002 * 305.59286 * 13 12 11 15 15 C 1.34780 * 120.62705 * 233.58108 * 14 13 12 16 16 O 1.21704 * 119.99464 * 174.39072 * 15 14 13 17 17 C 1.46372 * 119.99967 * 354.39743 * 15 14 13 18 18 C 1.35258 * 119.99671 * 194.28150 * 17 15 14 19 19 C 1.46327 * 120.00106 * 23.78049 * 18 17 15 20 20 C 1.38089 * 125.82368 * 187.63501 * 19 18 17 21 21 C 1.39798 * 106.83817 * 180.02562 * 20 19 18 22 22 C 1.37728 * 106.89713 * 359.97438 * 21 20 19 23 23 C 1.47012 * 125.76958 * 180.02562 * 22 21 20 24 24 N 1.34772 * 119.99833 * 179.97438 * 23 22 21 25 25 O 1.21654 * 119.99814 * 359.97438 * 23 22 21 26 26 O 1.34581 * 125.82372 * 7.64969 * 19 18 17 27 27 C 1.46924 * 118.73947 * 53.30831 * 14 13 12 28 28 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46335 * 298.68424 * 11 9 7 30 30 H 1.08997 * 109.46459 * 58.66544 * 11 9 7 31 31 H 1.08993 * 109.49768 * 181.31837 * 12 11 9 32 32 H 1.08995 * 109.49291 * 301.41283 * 12 11 9 33 33 H 1.09001 * 109.50856 * 185.70697 * 13 12 11 34 34 H 1.08999 * 109.42972 * 65.42895 * 13 12 11 35 35 H 1.07995 * 120.00681 * 14.27723 * 17 15 14 36 36 H 1.07997 * 119.99750 * 203.78403 * 18 17 15 37 37 H 1.07997 * 126.58017 * 0.03232 * 20 19 18 38 38 H 1.08004 * 126.55105 * 179.97438 * 21 20 19 39 39 H 0.97000 * 120.00178 * 359.97438 * 24 23 22 40 40 H 0.97000 * 119.99902 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.58579 * 66.43280 * 27 14 13 42 42 H 1.09003 * 109.58465 * 186.71124 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6254 -2.5580 0.8901 11 6 2.2445 -3.6632 -0.0048 12 6 1.4801 -4.9886 0.0287 13 6 0.6008 -5.0983 -1.2156 14 7 -0.2570 -3.9085 -1.3019 15 6 -1.5938 -4.0329 -1.4200 16 8 -2.3021 -3.0437 -1.3878 17 6 -2.1937 -5.3576 -1.5868 18 6 -3.4794 -5.4717 -1.9909 19 6 -4.1086 -4.3864 -2.7442 20 6 -5.4442 -4.3083 -3.0860 21 6 -5.6112 -3.1164 -3.7972 22 6 -4.3750 -2.5127 -3.8624 23 6 -4.0780 -1.2317 -4.5197 24 7 -2.8207 -0.7464 -4.5128 25 8 -4.9670 -0.6098 -5.0699 26 8 -3.4843 -3.2943 -3.2223 27 6 0.3697 -2.5806 -1.2508 28 1 -0.4850 0.8401 0.0004 29 1 2.8532 -3.6179 -0.9078 30 1 2.8890 -3.5938 0.8715 31 1 2.1884 -5.8167 0.0493 32 1 0.8523 -5.0240 0.9190 33 1 -0.0196 -5.9918 -1.1453 34 1 1.2325 -5.1584 -2.1018 35 1 -1.6097 -6.2439 -1.3872 36 1 -4.0416 -6.3638 -1.7576 37 1 -6.2124 -5.0295 -2.8492 38 1 -6.5334 -2.7408 -4.2155 39 1 -2.1118 -1.2421 -4.0738 40 1 -2.6247 0.0990 -4.9462 41 1 0.9822 -2.4312 -2.1400 42 1 -0.4032 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:32 Heat of formation + Delta-G solvation = -36.445114 kcal Electronic energy + Delta-G solvation = -27243.993438 eV Core-core repulsion = 23384.234334 eV Total energy + Delta-G solvation = -3859.759104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.34381 -39.48415 -38.96864 -36.83183 -33.97262 -33.54039 -33.27022 -32.73233 -31.80941 -29.94308 -28.92937 -25.62994 -25.01280 -23.80875 -21.98109 -21.69787 -21.50713 -20.19791 -19.30683 -18.47004 -17.79899 -17.13866 -16.74925 -16.25778 -16.02383 -15.67091 -14.75513 -14.58561 -14.36411 -14.22345 -13.93008 -13.84137 -13.73170 -13.22537 -13.02506 -12.90747 -12.69865 -12.51255 -12.14299 -12.05019 -11.88966 -11.02822 -10.93513 -10.57135 -10.44796 -10.36639 -10.28985 -10.20457 -9.92283 -9.77764 -9.62169 -9.34667 -9.16014 -8.92910 -8.47148 -7.98840 -7.69208 -6.03406 -4.12664 0.44653 1.64758 2.72648 2.78821 3.27939 3.31026 3.34986 3.35691 3.66223 3.69701 3.79035 4.38938 4.55447 4.85725 4.94834 5.01167 5.16283 5.26060 5.40520 5.45648 5.54443 5.67400 5.70342 5.85171 5.91677 6.00908 6.12495 6.13046 6.26054 6.45750 6.56082 6.61780 6.75848 6.80534 6.92395 7.04756 7.10588 7.23970 7.46798 7.59577 7.82553 7.95525 8.21033 8.24142 8.34497 8.83342 8.91769 9.53039 11.01141 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.004942 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.831902 B = 5664.526835 C = 7676.306418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.600 5.600 15 C 0.525 3.475 16 O -0.517 6.517 17 C -0.183 4.183 18 C -0.029 4.029 19 C 0.047 3.953 20 C -0.201 4.201 21 C -0.132 4.132 22 C -0.071 4.071 23 C 0.612 3.388 24 N -0.835 5.835 25 O -0.537 6.537 26 O -0.110 6.110 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.414 0.586 40 H 0.407 0.593 41 H 0.041 0.959 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 -13.690 -6.087 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.332 5.332 15 C 0.314 3.686 16 O -0.395 6.395 17 C -0.204 4.204 18 C -0.049 4.049 19 C -0.006 4.006 20 C -0.220 4.220 21 C -0.152 4.152 22 C -0.125 4.125 23 C 0.397 3.603 24 N -0.397 5.397 25 O -0.416 6.416 26 O -0.002 6.002 27 C -0.007 4.007 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.244 0.756 40 H 0.239 0.761 41 H 0.059 0.941 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.647 -12.656 -6.344 15.241 hybrid contribution 0.935 0.832 0.283 1.283 sum -4.712 -11.823 -6.061 14.097 Atomic orbital electron populations 1.69881 1.05636 1.26883 1.49207 1.25033 0.94874 0.99138 0.94851 0.86687 0.79612 0.83264 0.78606 1.20268 1.21269 1.20295 1.21037 0.92849 0.90151 1.52021 0.92490 1.18958 0.92624 0.92247 0.94112 0.95361 1.21624 0.98564 0.94091 1.00555 1.21887 0.98650 0.99176 0.97636 1.21609 0.93535 0.87919 0.98532 1.48439 1.05219 1.08922 1.70636 1.18274 0.82653 0.88901 0.78819 1.90870 1.60248 1.38718 1.49619 1.23645 0.95832 0.98487 1.02450 1.21496 0.93701 0.94940 0.94757 1.21204 0.91312 0.88029 1.00081 1.22086 0.95207 1.00058 1.04672 1.21949 0.97414 0.94941 1.00932 1.22403 0.89643 0.95318 1.05138 1.16602 0.83122 0.82241 0.78360 1.43712 1.10121 1.26907 1.58963 1.90868 1.46093 1.58693 1.45931 1.84412 1.36445 1.26500 1.52893 1.22268 0.98653 0.81369 0.98411 0.92638 0.93208 0.93054 0.92171 0.92158 0.91038 0.92044 0.84051 0.82260 0.82531 0.82432 0.75633 0.76149 0.94070 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 11.39 55.43 0.63 -24.17 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.94 2.25 -91.66 -0.21 0.74 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 12 C -0.14 -2.03 6.07 -26.83 -0.16 -2.19 16 13 C 0.11 1.52 6.28 -3.93 -0.02 1.50 16 14 N -0.60 -11.11 2.98 -174.69 -0.52 -11.63 16 15 C 0.53 9.71 7.00 -12.99 -0.09 9.62 16 16 O -0.52 -11.58 12.53 -19.59 -0.25 -11.82 16 17 C -0.18 -2.39 9.32 -37.37 -0.35 -2.74 16 18 C -0.03 -0.34 10.04 -37.39 -0.38 -0.72 16 19 C 0.05 0.69 6.29 -36.39 -0.23 0.46 16 20 C -0.20 -2.55 10.88 -39.05 -0.42 -2.98 16 21 C -0.13 -1.90 10.64 -39.19 -0.42 -2.32 16 22 C -0.07 -1.18 7.16 -36.21 -0.26 -1.44 16 23 C 0.61 10.39 8.07 -12.71 -0.10 10.29 16 24 N -0.83 -12.27 8.87 30.34 0.27 -12.01 16 25 O -0.54 -10.15 17.70 5.23 0.09 -10.06 16 26 O -0.11 -1.90 6.88 -20.89 -0.14 -2.05 16 27 C 0.11 2.57 5.41 -3.71 -0.02 2.55 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.77 5.39 -51.93 -0.28 0.49 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.14 1.33 5.93 -52.49 -0.31 1.02 16 36 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 39 H 0.41 6.26 8.58 -40.82 -0.35 5.91 16 40 H 0.41 5.07 8.93 -40.82 -0.36 4.71 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.12 3.27 5.11 -51.93 -0.27 3.00 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -33.21 350.76 -8.18 -41.39 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.34 Total: 11.14 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.19 Total: -1.83 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.38 Total: -47.80 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.30 Total: -23.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.21 -8.18 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.943 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds