Wall clock time and date at job start Tue Mar 31 2020 12:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47386 * 240.00367 * 3 2 1 5 5 H 1.48508 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47568 * 120.00332 * 3 2 1 7 7 C 1.37871 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49569 * 299.93824 * 9 7 2 11 11 C 1.53034 * 109.52281 * 179.85795 * 9 7 2 12 12 C 1.53047 * 109.53796 * 178.66943 * 11 9 7 13 13 C 1.52760 * 109.38184 * 61.23515 * 12 11 9 14 14 N 1.46924 * 109.01002 * 305.59286 * 13 12 11 15 15 C 1.34780 * 120.62705 * 233.58108 * 14 13 12 16 16 O 1.21704 * 119.99464 * 174.39072 * 15 14 13 17 17 C 1.46372 * 119.99967 * 354.39743 * 15 14 13 18 18 C 1.35258 * 119.99671 * 194.28150 * 17 15 14 19 19 C 1.46327 * 120.00106 * 23.78049 * 18 17 15 20 20 C 1.38089 * 125.82368 * 187.63501 * 19 18 17 21 21 C 1.39798 * 106.83817 * 180.02562 * 20 19 18 22 22 C 1.37728 * 106.89713 * 359.97438 * 21 20 19 23 23 C 1.47012 * 125.76958 * 180.02562 * 22 21 20 24 24 N 1.34772 * 119.99833 * 179.97438 * 23 22 21 25 25 O 1.21654 * 119.99814 * 359.97438 * 23 22 21 26 26 O 1.34581 * 125.82372 * 7.64969 * 19 18 17 27 27 C 1.46924 * 118.73947 * 53.30831 * 14 13 12 28 28 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46335 * 298.68424 * 11 9 7 30 30 H 1.08997 * 109.46459 * 58.66544 * 11 9 7 31 31 H 1.08993 * 109.49768 * 181.31837 * 12 11 9 32 32 H 1.08995 * 109.49291 * 301.41283 * 12 11 9 33 33 H 1.09001 * 109.50856 * 185.70697 * 13 12 11 34 34 H 1.08999 * 109.42972 * 65.42895 * 13 12 11 35 35 H 1.07995 * 120.00681 * 14.27723 * 17 15 14 36 36 H 1.07997 * 119.99750 * 203.78403 * 18 17 15 37 37 H 1.07997 * 126.58017 * 0.03232 * 20 19 18 38 38 H 1.08004 * 126.55105 * 179.97438 * 21 20 19 39 39 H 0.97000 * 120.00178 * 359.97438 * 24 23 22 40 40 H 0.97000 * 119.99902 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.58579 * 66.43280 * 27 14 13 42 42 H 1.09003 * 109.58465 * 186.71124 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6254 -2.5580 0.8901 11 6 2.2445 -3.6632 -0.0048 12 6 1.4801 -4.9886 0.0287 13 6 0.6008 -5.0983 -1.2156 14 7 -0.2570 -3.9085 -1.3019 15 6 -1.5938 -4.0329 -1.4200 16 8 -2.3021 -3.0437 -1.3878 17 6 -2.1937 -5.3576 -1.5868 18 6 -3.4794 -5.4717 -1.9909 19 6 -4.1086 -4.3864 -2.7442 20 6 -5.4442 -4.3083 -3.0860 21 6 -5.6112 -3.1164 -3.7972 22 6 -4.3750 -2.5127 -3.8624 23 6 -4.0780 -1.2317 -4.5197 24 7 -2.8207 -0.7464 -4.5128 25 8 -4.9670 -0.6098 -5.0699 26 8 -3.4843 -3.2943 -3.2223 27 6 0.3697 -2.5806 -1.2508 28 1 -0.4850 0.8401 0.0004 29 1 2.8532 -3.6179 -0.9078 30 1 2.8890 -3.5938 0.8715 31 1 2.1884 -5.8167 0.0493 32 1 0.8523 -5.0240 0.9190 33 1 -0.0196 -5.9918 -1.1453 34 1 1.2325 -5.1584 -2.1018 35 1 -1.6097 -6.2439 -1.3872 36 1 -4.0416 -6.3638 -1.7576 37 1 -6.2124 -5.0295 -2.8492 38 1 -6.5334 -2.7408 -4.2155 39 1 -2.1118 -1.2421 -4.0738 40 1 -2.6247 0.0990 -4.9462 41 1 0.9822 -2.4312 -2.1400 42 1 -0.4032 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855256434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:31 Heat of formation + Delta-G solvation = -59.736954 kcal Electronic energy + Delta-G solvation = -27245.003448 eV Core-core repulsion = 23384.234334 eV Total energy + Delta-G solvation = -3860.769114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46778 -40.88105 -40.30264 -38.32079 -35.31243 -35.09469 -34.54908 -33.86605 -33.38029 -31.56880 -30.10457 -27.29274 -26.54166 -25.11943 -23.46739 -22.91673 -22.67013 -21.48805 -20.74178 -19.71297 -19.10170 -18.56631 -18.04853 -17.99947 -17.27960 -16.97812 -16.55185 -15.97272 -15.74620 -15.54075 -15.26399 -15.11955 -14.94847 -14.59856 -14.44337 -14.11381 -14.03411 -13.97652 -13.46559 -13.43377 -13.15906 -12.86774 -12.64127 -12.25697 -12.22970 -11.75072 -11.71698 -11.61203 -11.23707 -11.08643 -10.97263 -10.91742 -10.80315 -10.56238 -10.44083 -9.33914 -8.94899 -8.09995 -6.26906 -0.62827 0.51427 1.39822 1.40147 1.48473 1.65216 1.69971 2.04743 2.33647 2.42891 2.49954 2.52600 3.17800 3.54071 3.80644 3.85303 3.95932 4.11797 4.23072 4.34427 4.49898 4.59814 4.65289 4.67866 4.80977 4.84986 4.87652 4.91228 5.04082 5.13168 5.15609 5.28821 5.32337 5.40488 5.52665 5.56593 5.57553 5.71728 5.90291 5.93696 6.03854 6.22955 6.35425 6.80053 6.85344 6.97531 7.42031 7.48450 8.91723 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.004942 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.831902 B = 5664.526835 C = 7676.306418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.038 3.962 10 H -0.017 1.017 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.102 3.898 14 N -0.607 5.607 15 C 0.511 3.489 16 O -0.570 6.570 17 C -0.196 4.196 18 C -0.005 4.005 19 C 0.020 3.980 20 C -0.184 4.184 21 C -0.130 4.130 22 C -0.110 4.110 23 C 0.606 3.394 24 N -0.826 5.826 25 O -0.566 6.566 26 O -0.134 6.134 27 C 0.129 3.871 28 H 0.257 0.743 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.219 0.781 37 H 0.202 0.798 38 H 0.171 0.829 39 H 0.411 0.589 40 H 0.415 0.585 41 H 0.033 0.967 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 -17.426 -6.157 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.018 3.982 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.019 4.019 14 N -0.339 5.339 15 C 0.302 3.698 16 O -0.452 6.452 17 C -0.216 4.216 18 C -0.024 4.024 19 C -0.032 4.032 20 C -0.202 4.202 21 C -0.151 4.151 22 C -0.164 4.164 23 C 0.392 3.608 24 N -0.388 5.388 25 O -0.447 6.447 26 O -0.028 6.028 27 C 0.006 3.994 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.204 0.796 36 H 0.236 0.764 37 H 0.219 0.781 38 H 0.189 0.811 39 H 0.241 0.759 40 H 0.248 0.752 41 H 0.052 0.948 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.503 -16.432 -6.415 18.478 hybrid contribution 0.878 1.973 0.330 2.184 sum -4.626 -14.459 -6.085 16.355 Atomic orbital electron populations 1.70085 1.07161 1.27015 1.50536 1.25800 0.95498 1.02499 0.94699 0.85717 0.78357 0.79184 0.79042 1.19128 1.21669 1.19626 1.21484 0.93158 0.91672 1.51226 0.92330 1.18894 0.93121 0.93585 0.92552 0.99919 1.21520 0.97706 0.94580 1.00618 1.21854 0.99060 0.97919 0.97756 1.21975 0.93810 0.87524 0.98638 1.48452 1.06142 1.08531 1.70733 1.19283 0.82203 0.90776 0.77507 1.90849 1.61338 1.41178 1.51797 1.23642 0.96674 0.96471 1.04859 1.22296 0.93119 0.95249 0.91750 1.22173 0.92560 0.88057 1.00456 1.22583 0.95356 0.99667 1.02618 1.22338 0.96997 0.95432 1.00334 1.22491 0.90827 0.95951 1.07153 1.16821 0.83178 0.82644 0.78134 1.43652 1.09586 1.27116 1.58410 1.90828 1.46744 1.59713 1.47465 1.84392 1.37356 1.27585 1.53483 1.21593 0.97078 0.83351 0.97349 0.93360 0.92607 0.93466 0.87822 0.93165 0.86445 0.90499 0.79554 0.76436 0.78106 0.81126 0.75915 0.75194 0.94826 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.36 11.39 21.45 0.24 -54.12 16 2 C 0.01 0.82 5.30 84.65 0.45 1.27 16 3 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -29.16 8.56 25.60 0.22 -28.94 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 10 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 11 C -0.11 -3.97 5.11 30.62 0.16 -3.81 16 12 C -0.13 -3.47 6.07 30.53 0.19 -3.28 16 13 C 0.10 2.55 6.28 86.22 0.54 3.09 16 14 N -0.61 -22.32 2.98 -824.82 -2.46 -24.78 16 15 C 0.51 18.73 7.00 86.36 0.60 19.33 16 16 O -0.57 -26.65 12.53 19.32 0.24 -26.41 16 17 C -0.20 -4.40 9.32 23.70 0.22 -4.18 16 18 C -0.01 -0.10 10.04 23.69 0.24 0.14 16 19 C 0.02 0.56 6.29 24.34 0.15 0.71 16 20 C -0.18 -4.12 10.88 22.61 0.25 -3.87 16 21 C -0.13 -3.67 10.64 22.53 0.24 -3.43 16 22 C -0.11 -3.81 7.16 24.45 0.18 -3.64 16 23 C 0.61 21.83 8.07 86.54 0.70 22.53 16 24 N -0.83 -26.31 8.87 -176.17 -1.56 -27.87 16 25 O -0.57 -22.44 17.70 -4.20 -0.07 -22.52 16 26 O -0.13 -4.74 6.88 14.65 0.10 -4.64 16 27 C 0.13 6.12 5.41 86.36 0.47 6.59 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.87 5.39 -2.39 -0.01 1.86 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.19 2.34 5.93 -2.91 -0.02 2.32 16 36 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.41 13.71 8.58 -92.71 -0.80 12.92 16 40 H 0.42 11.27 8.93 -92.71 -0.83 10.44 16 41 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 4.53 5.11 -2.39 -0.01 4.52 16 Total: -1.00 -81.04 350.76 2.54 -78.50 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.54 Total: 31.60 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.57 Total: 4.34 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.77 Total: -106.77 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: 0.27 Total: -53.56 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -81.04 2.54 -78.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.762 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds