Wall clock time and date at job start Tue Mar 31 2020 12:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00198 * 2 1 4 4 H 1.48506 * 109.47062 * 240.00177 * 3 2 1 5 5 H 1.48499 * 109.47542 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47419 * 120.00183 * 3 2 1 7 7 C 1.37880 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00315 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.49262 * 59.93248 * 9 7 2 11 11 C 1.53034 * 109.50013 * 179.97438 * 9 7 2 12 12 C 1.53032 * 109.54088 * 181.31368 * 11 9 7 13 13 C 1.53194 * 109.31613 * 298.64017 * 12 11 9 14 14 N 1.46921 * 108.77478 * 54.63212 * 13 12 11 15 15 C 1.34780 * 120.63218 * 126.37198 * 14 13 12 16 16 O 1.21705 * 120.00099 * 174.94308 * 15 14 13 17 17 C 1.46366 * 119.99908 * 354.93918 * 15 14 13 18 18 C 1.35252 * 120.00025 * 194.69785 * 17 15 14 19 19 C 1.46329 * 119.99883 * 23.63033 * 18 17 15 20 20 C 1.38091 * 125.82082 * 187.52434 * 19 18 17 21 21 C 1.39796 * 106.83467 * 180.15073 * 20 19 18 22 22 C 1.37718 * 106.90005 * 359.58478 * 21 20 19 23 23 C 1.47007 * 125.77294 * 180.29594 * 22 21 20 24 24 N 1.34775 * 120.00284 * 179.97438 * 23 22 21 25 25 O 1.21658 * 119.99796 * 0.02562 * 23 22 21 26 26 O 1.34574 * 125.82372 * 7.20697 * 19 18 17 27 27 C 1.46934 * 118.74046 * 306.64486 * 14 13 12 28 28 H 0.96996 * 119.99363 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.45931 * 61.29573 * 11 9 7 30 30 H 1.08998 * 109.46196 * 301.34397 * 11 9 7 31 31 H 1.08996 * 109.50107 * 178.68275 * 12 11 9 32 32 H 1.09006 * 109.49656 * 58.59196 * 12 11 9 33 33 H 1.08997 * 109.58212 * 294.84649 * 13 12 11 34 34 H 1.08994 * 109.70562 * 174.48981 * 13 12 11 35 35 H 1.08003 * 120.00226 * 14.69718 * 17 15 14 36 36 H 1.08003 * 119.99877 * 203.62814 * 18 17 15 37 37 H 1.08000 * 126.57951 * 359.97438 * 20 19 18 38 38 H 1.08004 * 126.55201 * 179.84125 * 21 20 19 39 39 H 0.97006 * 119.99904 * 0.02562 * 24 23 22 40 40 H 0.96997 * 120.00157 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.58763 * 173.14413 * 27 14 13 42 42 H 1.09000 * 109.58557 * 293.57191 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6236 -2.5570 -0.8890 11 6 2.2448 -3.6629 0.0005 12 6 1.4808 -4.9885 -0.0325 13 6 0.6055 -5.1002 1.2197 14 7 -0.2530 -3.9109 1.3042 15 6 -1.5895 -4.0359 1.4257 16 8 -2.2810 -3.0475 1.5872 17 6 -2.2093 -5.3604 1.3635 18 6 -3.5453 -5.4742 1.1861 19 6 -4.2949 -4.3870 0.5558 20 6 -5.6694 -4.3099 0.4472 21 6 -5.9563 -3.1168 -0.2225 22 6 -4.7504 -2.5071 -0.4886 23 6 -4.5714 -1.2202 -1.1764 24 7 -3.3322 -0.7293 -1.3758 25 8 -5.5419 -0.5979 -1.5648 26 8 -3.7627 -3.2888 -0.0114 27 6 0.3725 -2.5826 1.2475 28 1 -0.4849 0.8401 0.0004 29 1 2.8560 -3.6185 0.9020 30 1 2.8872 -3.5919 -0.8772 31 1 2.1894 -5.8164 -0.0561 32 1 0.8506 -5.0231 -0.9213 33 1 1.2393 -5.1570 2.1046 34 1 -0.0144 -5.9945 1.1562 35 1 -1.5999 -6.2469 1.4591 36 1 -4.0588 -6.3676 1.5096 37 1 -6.3851 -5.0339 0.8077 38 1 -6.9365 -2.7424 -0.4782 39 1 -2.5583 -1.2254 -1.0658 40 1 -3.2140 0.1196 -1.8300 41 1 -0.4011 -1.8162 1.1998 42 1 0.9869 -2.4299 2.1348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:37 Heat of formation + Delta-G solvation = -37.973244 kcal Electronic energy + Delta-G solvation = -27627.534898 eV Core-core repulsion = 23767.709529 eV Total energy + Delta-G solvation = -3859.825369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24082 -39.47121 -38.74487 -36.83793 -33.87715 -33.42903 -33.18129 -32.60696 -31.80602 -29.94428 -28.83812 -25.59389 -25.02915 -23.73049 -21.95869 -21.62253 -21.43014 -20.05725 -19.29656 -18.29251 -17.68697 -17.11927 -16.46816 -16.24040 -15.93410 -15.61835 -14.70479 -14.53399 -14.25666 -14.04921 -13.97725 -13.83250 -13.73951 -13.10566 -12.90781 -12.72244 -12.69577 -12.50511 -12.17206 -12.06549 -11.89889 -11.04819 -10.95036 -10.59737 -10.44234 -10.31798 -10.15709 -10.11702 -9.96288 -9.69071 -9.36122 -9.30406 -9.18358 -8.95035 -8.49818 -7.92472 -7.68720 -6.10151 -4.16063 0.51475 1.76094 2.78779 2.91679 3.26560 3.33281 3.34684 3.49296 3.70938 3.78606 3.91860 4.36310 4.63170 4.87777 5.02666 5.14895 5.22120 5.26620 5.41042 5.44170 5.55522 5.71363 5.79130 5.92067 5.93232 6.05196 6.13034 6.19618 6.24682 6.52736 6.55310 6.61819 6.80842 6.90248 7.00692 7.09789 7.23216 7.24804 7.56180 7.77523 7.81583 7.92200 8.20628 8.31208 8.51776 8.82004 8.88573 9.49390 10.95510 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.005712 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.420560 B = 4901.200435 C = 6991.045043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.600 5.600 15 C 0.527 3.473 16 O -0.520 6.520 17 C -0.188 4.188 18 C -0.025 4.025 19 C 0.039 3.961 20 C -0.200 4.200 21 C -0.139 4.139 22 C -0.061 4.061 23 C 0.606 3.394 24 N -0.823 5.823 25 O -0.545 6.545 26 O -0.105 6.105 27 C 0.114 3.886 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.422 0.578 40 H 0.407 0.593 41 H 0.124 0.876 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 -13.524 1.363 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.017 4.017 14 N -0.332 5.332 15 C 0.316 3.684 16 O -0.398 6.398 17 C -0.209 4.209 18 C -0.045 4.045 19 C -0.015 4.015 20 C -0.219 4.219 21 C -0.159 4.159 22 C -0.116 4.116 23 C 0.391 3.609 24 N -0.385 5.385 25 O -0.425 6.425 26 O 0.003 5.997 27 C -0.007 4.007 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.255 0.745 40 H 0.238 0.762 41 H 0.141 0.859 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.820 -12.495 1.255 13.841 hybrid contribution 0.989 0.819 0.137 1.291 sum -4.831 -11.676 1.393 12.713 Atomic orbital electron populations 1.69813 1.05656 1.26769 1.49712 1.24969 0.94949 0.99043 0.94697 0.86657 0.79629 0.83150 0.78525 1.20402 1.21280 1.20373 1.21039 0.92891 0.90114 1.51644 0.92528 1.18884 0.92619 0.92265 0.93992 0.95395 1.21628 0.98592 0.94131 1.00575 1.21945 0.98622 0.99117 0.97513 1.21702 0.93519 0.87972 0.98484 1.48431 1.05418 1.08907 1.70489 1.18277 0.82600 0.88899 0.78672 1.90851 1.61586 1.38801 1.48611 1.23590 0.95472 0.98392 1.03447 1.21485 0.92866 0.94875 0.95277 1.21186 0.91662 0.88244 1.00402 1.22068 0.94043 1.00001 1.05767 1.21929 0.98118 0.95045 1.00834 1.22539 0.87332 0.95149 1.06594 1.16643 0.83998 0.82288 0.78002 1.43794 1.08209 1.26341 1.60197 1.90849 1.39945 1.59050 1.52668 1.84466 1.34272 1.25979 1.55028 1.22191 0.98734 0.81281 0.98452 0.92740 0.93217 0.93044 0.92253 0.92135 0.92072 0.91009 0.84088 0.82383 0.82658 0.82506 0.74544 0.76233 0.85862 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.84 11.39 55.43 0.63 -22.21 16 2 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.13 8.56 -34.44 -0.29 -13.43 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.95 2.24 -91.88 -0.21 0.74 16 10 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 11 C -0.11 -2.07 5.11 -26.70 -0.14 -2.21 16 12 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 13 C 0.11 1.51 6.35 -3.71 -0.02 1.49 16 14 N -0.60 -11.07 2.98 -174.69 -0.52 -11.59 16 15 C 0.53 9.74 7.00 -12.99 -0.09 9.65 16 16 O -0.52 -11.58 12.55 -19.61 -0.25 -11.83 16 17 C -0.19 -2.49 9.27 -37.38 -0.35 -2.83 16 18 C -0.03 -0.30 10.04 -37.39 -0.38 -0.68 16 19 C 0.04 0.59 6.30 -36.38 -0.23 0.36 16 20 C -0.20 -2.66 10.88 -39.05 -0.42 -3.09 16 21 C -0.14 -2.13 10.64 -39.19 -0.42 -2.55 16 22 C -0.06 -1.12 7.16 -36.22 -0.26 -1.37 16 23 C 0.61 11.53 8.07 -12.71 -0.10 11.42 16 24 N -0.82 -14.84 8.87 30.34 0.27 -14.57 16 25 O -0.54 -11.23 17.70 5.23 0.09 -11.14 16 26 O -0.11 -1.97 6.85 -20.92 -0.14 -2.11 16 27 C 0.11 2.55 5.36 -3.93 -0.02 2.53 16 28 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.78 5.35 -51.93 -0.28 0.50 16 35 H 0.14 1.33 6.00 -52.48 -0.31 1.02 16 36 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 39 H 0.42 8.36 8.58 -40.82 -0.35 8.01 16 40 H 0.41 6.64 8.93 -40.82 -0.36 6.27 16 41 H 0.12 3.21 5.15 -51.93 -0.27 2.94 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -30.72 350.79 -8.18 -38.90 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.34 Total: 14.47 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.18 Total: -0.50 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.38 Total: -48.37 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.30 Total: -25.08 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.72 -8.18 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.927 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds