Wall clock time and date at job start Tue Mar 31 2020 13:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38280 * 119.92877 * 2 1 4 4 C 1.38112 * 120.06916 * 180.02562 * 3 2 1 5 5 C 1.38876 * 119.92937 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.06885 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00040 * 303.46018 * 6 5 4 8 8 C 1.50704 * 109.47093 * 269.99779 * 7 6 5 9 9 H 1.08000 * 119.99500 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99899 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00624 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99751 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47032 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47251 * 119.99607 * 12 10 8 15 15 H 1.48502 * 109.47245 * 239.99655 * 12 10 8 16 16 C 1.34779 * 119.99939 * 123.45560 * 6 5 4 17 17 O 1.21288 * 119.99459 * 354.36827 * 16 6 5 18 18 C 1.50694 * 119.99990 * 174.36229 * 16 6 5 19 19 H 1.08998 * 109.33000 * 40.22796 * 18 16 6 20 20 C 1.53137 * 109.39733 * 280.45333 * 18 16 6 21 21 C 1.53493 * 108.35143 * 191.87027 * 20 18 16 22 22 O 1.45431 * 108.11706 * 61.73417 * 21 20 18 23 23 C 1.34212 * 117.18195 * 313.57163 * 22 21 20 24 24 O 1.21518 * 118.46166 * 196.79838 * 23 22 21 25 25 N 1.33736 * 123.07940 * 16.77705 * 23 22 21 26 26 C 1.38866 * 119.85972 * 0.25374 * 5 4 3 27 27 C 1.38116 * 119.92710 * 359.51487 * 26 5 4 28 28 H 1.09005 * 109.46954 * 90.00566 * 1 2 3 29 29 H 1.09005 * 109.47266 * 210.00167 * 1 2 3 30 30 H 1.08997 * 109.47494 * 330.00236 * 1 2 3 31 31 H 1.07997 * 119.96672 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.03287 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47483 * 29.99716 * 7 6 5 34 34 H 1.09001 * 109.47023 * 149.99853 * 7 6 5 35 35 H 0.96997 * 120.00539 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.68402 * 311.60608 * 20 18 16 37 37 H 1.08995 * 109.68652 * 72.13203 * 20 18 16 38 38 H 1.08992 * 109.71826 * 302.08423 * 21 20 18 39 39 H 1.09000 * 109.74318 * 181.39498 * 21 20 18 40 40 H 0.96999 * 118.51515 * 177.73524 * 25 23 22 41 41 H 1.08002 * 120.03802 * 179.74662 * 26 5 4 42 42 H 1.08004 * 119.96662 * 180.23323 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2738 -0.0001 -0.0005 6 7 5.6731 -0.0001 -0.0016 7 6 6.4048 0.6990 -1.0610 8 6 6.6551 -0.2470 -2.2070 9 1 6.3039 -1.2668 -2.1519 10 6 7.3325 0.1894 -3.3258 11 7 7.7597 1.4313 -3.3931 12 14 7.6422 -0.9831 -4.7467 13 1 7.0645 -2.3130 -4.4259 14 1 7.0041 -0.4495 -5.9769 15 1 9.1045 -1.1191 -4.9666 16 6 6.3478 -0.6431 0.9720 17 8 5.7463 -1.1343 1.9037 18 6 7.8492 -0.7518 0.9028 19 1 8.2632 0.1917 0.5474 20 6 8.2338 -1.8732 -0.0665 21 6 9.7312 -2.1652 0.1020 22 8 9.9534 -2.6150 1.4671 23 6 9.3752 -1.9050 2.4483 24 8 9.7784 -2.0529 3.5851 25 7 8.3763 -1.0421 2.2337 26 6 3.5780 -1.2018 -0.0053 27 6 2.1969 -1.1984 0.0001 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6552 2.1327 0.0004 32 1 4.1163 2.1381 -0.0010 33 1 5.8155 1.5463 -1.4114 34 1 7.3575 1.0560 -0.6698 35 1 8.2360 1.7385 -4.1803 36 1 7.6566 -2.7694 0.1612 37 1 8.0338 -1.5581 -1.0905 38 1 10.3061 -1.2583 -0.0848 39 1 10.0352 -2.9449 -0.5964 40 1 7.9845 -0.5883 2.9962 41 1 4.1163 -2.1382 -0.0095 42 1 1.6551 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858860884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:01 Heat of formation + Delta-G solvation = -85.797583 kcal Electronic energy + Delta-G solvation = -27356.003878 eV Core-core repulsion = 23494.104690 eV Total energy + Delta-G solvation = -3861.899188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02964 -39.91752 -38.36997 -36.88882 -35.56880 -35.10350 -33.08074 -31.76417 -31.07188 -30.66065 -27.80027 -27.43267 -25.60003 -23.82911 -23.51255 -22.18325 -21.58720 -19.92954 -19.32159 -18.08533 -17.36472 -17.03458 -16.93347 -16.35232 -15.72060 -15.28493 -15.13367 -14.70209 -14.67663 -14.36480 -14.11910 -13.95977 -13.58926 -13.37035 -13.22506 -13.12351 -12.65651 -12.26160 -12.16420 -11.91508 -11.70211 -11.51306 -11.40031 -11.30065 -11.19903 -11.02421 -10.81802 -10.53834 -10.42074 -10.28855 -10.07075 -9.67691 -9.01246 -8.83876 -8.77043 -8.61246 -7.64427 -6.45963 -4.54741 1.58209 1.73089 2.73244 2.88168 2.98596 3.03689 3.15270 3.17288 3.45054 3.75231 4.03769 4.12146 4.65835 4.76502 4.86460 5.06743 5.07804 5.09719 5.12570 5.28659 5.35858 5.48264 5.56121 5.65608 5.69878 5.74773 5.80166 5.96107 6.01729 6.09576 6.30651 6.41675 6.48800 6.64513 6.75510 6.84659 6.90485 6.96314 7.07522 7.40698 7.48480 7.71444 7.80418 7.87446 8.29906 8.44871 8.58870 9.12382 10.59981 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.005770 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.417722 B = 4851.505312 C = 7087.003684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.123 4.123 5 C 0.169 3.831 6 N -0.549 5.549 7 C 0.231 3.769 8 C -0.546 4.546 9 H 0.068 0.932 10 C 0.071 3.929 11 N -0.882 5.882 12 Si 0.892 3.108 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.512 3.488 17 O -0.541 6.541 18 C 0.126 3.874 19 H 0.113 0.887 20 C -0.178 4.178 21 C 0.063 3.937 22 O -0.348 6.348 23 C 0.665 3.335 24 O -0.546 6.546 25 N -0.712 5.712 26 C -0.106 4.106 27 C -0.110 4.110 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.269 0.731 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.419 0.581 41 H 0.118 0.882 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -0.785 1.679 5.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.143 4.143 5 C 0.077 3.923 6 N -0.275 5.275 7 C 0.113 3.887 8 C -0.584 4.584 9 H 0.086 0.914 10 C -0.134 4.134 11 N -0.519 5.519 12 Si 0.719 3.281 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.299 3.701 17 O -0.419 6.419 18 C 0.018 3.982 19 H 0.131 0.869 20 C -0.215 4.215 21 C -0.011 4.011 22 O -0.260 6.260 23 C 0.418 3.582 24 O -0.432 6.432 25 N -0.379 5.379 26 C -0.126 4.126 27 C -0.128 4.128 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.169 0.831 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.257 0.743 41 H 0.136 0.864 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.371 -1.306 2.395 6.024 hybrid contribution -0.097 -0.113 -1.024 1.034 sum -5.468 -1.419 1.371 5.813 Atomic orbital electron populations 1.20718 0.91590 1.02261 1.01915 1.19798 0.95736 0.93210 1.01953 1.20769 0.93431 0.97338 1.01253 1.21079 0.94186 0.97276 1.01732 1.17569 0.83033 0.93197 0.98451 1.45920 1.03642 1.51405 1.26518 1.19740 0.91965 0.92997 0.84021 1.21416 1.37651 0.98056 1.01252 0.91400 1.24929 0.95038 0.95286 0.98137 1.69903 1.36879 1.15310 1.29763 0.86522 0.78274 0.81113 0.82233 1.19351 1.20584 1.20473 1.20487 0.89436 0.78121 0.82023 1.90702 1.69975 1.47539 1.33655 1.21048 0.92063 1.01793 0.83282 0.86933 1.22902 0.95736 0.98145 1.04733 1.23573 0.96314 1.02140 0.79024 1.86653 1.69327 1.52837 1.17154 1.17739 0.78837 0.77142 0.84526 1.90996 1.65946 1.67910 1.18365 1.45206 1.36445 1.45879 1.10331 1.21070 0.94071 0.97354 1.00114 1.20793 0.93504 0.97352 1.01171 0.91545 0.91944 0.91914 0.86178 0.85824 0.93652 0.93812 0.92129 0.90059 0.83050 0.89885 0.86433 0.74256 0.86373 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.00 0.36 -0.74 16 2 C -0.11 -1.47 5.88 -104.59 -0.62 -2.09 16 3 C -0.11 -1.57 9.69 -39.61 -0.38 -1.95 16 4 C -0.12 -2.04 9.31 -39.39 -0.37 -2.41 16 5 C 0.17 3.13 5.16 -83.69 -0.43 2.70 16 6 N -0.55 -10.31 2.56 -114.74 -0.29 -10.60 16 7 C 0.23 4.67 4.83 -5.19 -0.03 4.65 16 8 C -0.55 -11.87 6.70 -34.44 -0.23 -12.10 16 9 H 0.07 1.50 7.49 -52.49 -0.39 1.11 16 10 C 0.07 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.88 -21.25 13.29 55.43 0.74 -20.51 16 12 Si 0.89 17.94 29.54 -169.99 -5.02 12.91 16 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 16 C 0.51 9.46 6.61 -10.99 -0.07 9.38 16 17 O -0.54 -11.21 15.78 5.55 0.09 -11.12 16 18 C 0.13 2.04 2.85 -69.25 -0.20 1.84 16 19 H 0.11 1.74 6.20 -51.93 -0.32 1.42 16 20 C -0.18 -2.70 5.41 -26.40 -0.14 -2.84 16 21 C 0.06 0.84 7.20 37.41 0.27 1.11 16 22 O -0.35 -5.79 10.50 -39.28 -0.41 -6.20 16 23 C 0.66 12.03 8.55 53.59 0.46 12.49 16 24 O -0.55 -11.51 17.95 -19.41 -0.35 -11.86 16 25 N -0.71 -11.64 4.85 -60.48 -0.29 -11.93 16 26 C -0.11 -1.87 8.96 -39.39 -0.35 -2.22 16 27 C -0.11 -1.64 9.69 -39.61 -0.38 -2.03 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.94 7.81 -52.49 -0.41 1.53 16 33 H 0.05 0.99 7.33 -51.93 -0.38 0.61 16 34 H 0.04 0.88 6.03 -51.93 -0.31 0.57 16 35 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 36 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 37 H 0.15 2.49 4.83 -51.93 -0.25 2.24 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.42 6.66 8.51 -40.82 -0.35 6.31 16 41 H 0.12 2.12 8.05 -52.49 -0.42 1.70 16 42 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -28.24 351.47 -7.81 -36.05 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.35 Total: 10.67 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.21 Total: 7.30 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.15 Total: -43.05 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.67 Total: -29.18 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.24 -7.81 -36.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858860884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.744 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds