Wall clock time and date at job start Tue Mar 31 2020 13:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38280 * 119.92877 * 2 1 4 4 C 1.38112 * 120.06916 * 180.02562 * 3 2 1 5 5 C 1.38876 * 119.92937 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.06885 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00040 * 303.46018 * 6 5 4 8 8 C 1.50704 * 109.47093 * 269.99779 * 7 6 5 9 9 H 1.08000 * 119.99500 * 0.02562 * 8 7 6 10 10 C 1.37870 * 119.99899 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00624 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99751 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47032 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47251 * 119.99607 * 12 10 8 15 15 H 1.48502 * 109.47245 * 239.99655 * 12 10 8 16 16 C 1.34779 * 119.99939 * 123.45560 * 6 5 4 17 17 O 1.21288 * 119.99459 * 354.36827 * 16 6 5 18 18 C 1.50694 * 119.99990 * 174.36229 * 16 6 5 19 19 H 1.08998 * 109.33000 * 40.22796 * 18 16 6 20 20 C 1.53137 * 109.39733 * 280.45333 * 18 16 6 21 21 C 1.53493 * 108.35143 * 191.87027 * 20 18 16 22 22 O 1.45431 * 108.11706 * 61.73417 * 21 20 18 23 23 C 1.34212 * 117.18195 * 313.57163 * 22 21 20 24 24 O 1.21518 * 118.46166 * 196.79838 * 23 22 21 25 25 N 1.33736 * 123.07940 * 16.77705 * 23 22 21 26 26 C 1.38866 * 119.85972 * 0.25374 * 5 4 3 27 27 C 1.38116 * 119.92710 * 359.51487 * 26 5 4 28 28 H 1.09005 * 109.46954 * 90.00566 * 1 2 3 29 29 H 1.09005 * 109.47266 * 210.00167 * 1 2 3 30 30 H 1.08997 * 109.47494 * 330.00236 * 1 2 3 31 31 H 1.07997 * 119.96672 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.03287 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.47483 * 29.99716 * 7 6 5 34 34 H 1.09001 * 109.47023 * 149.99853 * 7 6 5 35 35 H 0.96997 * 120.00539 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.68402 * 311.60608 * 20 18 16 37 37 H 1.08995 * 109.68652 * 72.13203 * 20 18 16 38 38 H 1.08992 * 109.71826 * 302.08423 * 21 20 18 39 39 H 1.09000 * 109.74318 * 181.39498 * 21 20 18 40 40 H 0.96999 * 118.51515 * 177.73524 * 25 23 22 41 41 H 1.08002 * 120.03802 * 179.74662 * 26 5 4 42 42 H 1.08004 * 119.96662 * 180.23323 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2738 -0.0001 -0.0005 6 7 5.6731 -0.0001 -0.0016 7 6 6.4048 0.6990 -1.0610 8 6 6.6551 -0.2470 -2.2070 9 1 6.3039 -1.2668 -2.1519 10 6 7.3325 0.1894 -3.3258 11 7 7.7597 1.4313 -3.3931 12 14 7.6422 -0.9831 -4.7467 13 1 7.0645 -2.3130 -4.4259 14 1 7.0041 -0.4495 -5.9769 15 1 9.1045 -1.1191 -4.9666 16 6 6.3478 -0.6431 0.9720 17 8 5.7463 -1.1343 1.9037 18 6 7.8492 -0.7518 0.9028 19 1 8.2632 0.1917 0.5474 20 6 8.2338 -1.8732 -0.0665 21 6 9.7312 -2.1652 0.1020 22 8 9.9534 -2.6150 1.4671 23 6 9.3752 -1.9050 2.4483 24 8 9.7784 -2.0529 3.5851 25 7 8.3763 -1.0421 2.2337 26 6 3.5780 -1.2018 -0.0053 27 6 2.1969 -1.1984 0.0001 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6552 2.1327 0.0004 32 1 4.1163 2.1381 -0.0010 33 1 5.8155 1.5463 -1.4114 34 1 7.3575 1.0560 -0.6698 35 1 8.2360 1.7385 -4.1803 36 1 7.6566 -2.7694 0.1612 37 1 8.0338 -1.5581 -1.0905 38 1 10.3061 -1.2583 -0.0848 39 1 10.0352 -2.9449 -0.5964 40 1 7.9845 -0.5883 2.9962 41 1 4.1163 -2.1382 -0.0095 42 1 1.6551 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858860884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:01 Heat of formation + Delta-G solvation = -102.243365 kcal Electronic energy + Delta-G solvation = -27356.717020 eV Core-core repulsion = 23494.104690 eV Total energy + Delta-G solvation = -3862.612331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41865 -41.29755 -39.66707 -38.30884 -37.04771 -36.49261 -34.72341 -33.05793 -32.32100 -31.88120 -29.36246 -28.73044 -26.76920 -25.20726 -25.06714 -23.47951 -22.84117 -21.21276 -20.68268 -19.41410 -18.81365 -18.61612 -18.44174 -17.81776 -17.11124 -16.67033 -16.41130 -16.22721 -16.01691 -15.65294 -15.42523 -15.27748 -14.77683 -14.54597 -14.47431 -14.33704 -14.31163 -13.71152 -13.36925 -13.10896 -12.95800 -12.90795 -12.81231 -12.69751 -12.57825 -12.45315 -12.09219 -12.01430 -11.79875 -11.71459 -11.66268 -11.11538 -10.64260 -10.33487 -10.23957 -9.84877 -9.00479 -8.20236 -6.33430 0.33179 0.49457 1.32272 1.43476 1.45486 1.51303 1.57412 1.62316 2.05896 2.40503 2.45164 2.82884 3.10784 3.30470 3.50552 3.81584 3.87138 3.95976 4.06115 4.10022 4.21458 4.33076 4.48751 4.50630 4.55618 4.61653 4.83988 4.85092 4.91373 4.92316 5.09665 5.15018 5.18542 5.22243 5.41698 5.50613 5.60466 5.69070 5.69852 5.75380 6.00530 6.13077 6.34862 6.47087 6.74380 6.88934 7.06956 7.36499 8.84866 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.005770 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.417722 B = 4851.505312 C = 7087.003684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.109 4.109 4 C -0.137 4.137 5 C 0.131 3.869 6 N -0.546 5.546 7 C 0.244 3.756 8 C -0.539 4.539 9 H 0.062 0.938 10 C 0.036 3.964 11 N -0.911 5.911 12 Si 0.943 3.057 13 H -0.267 1.267 14 H -0.290 1.290 15 H -0.271 1.271 16 C 0.511 3.489 17 O -0.567 6.567 18 C 0.131 3.869 19 H 0.123 0.877 20 C -0.172 4.172 21 C 0.064 3.936 22 O -0.353 6.353 23 C 0.667 3.333 24 O -0.581 6.581 25 N -0.703 5.703 26 C -0.127 4.127 27 C -0.114 4.114 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.026 0.974 34 H 0.046 0.954 35 H 0.269 0.731 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.420 0.580 41 H 0.104 0.896 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 -1.068 0.883 6.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.157 4.157 5 C 0.040 3.960 6 N -0.271 5.271 7 C 0.125 3.875 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.166 4.166 11 N -0.550 5.550 12 Si 0.769 3.231 13 H -0.191 1.191 14 H -0.216 1.216 15 H -0.196 1.196 16 C 0.299 3.701 17 O -0.447 6.447 18 C 0.023 3.977 19 H 0.140 0.860 20 C -0.210 4.210 21 C -0.009 4.009 22 O -0.264 6.264 23 C 0.420 3.580 24 O -0.470 6.470 25 N -0.368 5.368 26 C -0.147 4.147 27 C -0.132 4.132 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.168 0.832 40 H 0.259 0.741 41 H 0.122 0.878 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.504 -1.590 1.578 6.879 hybrid contribution 0.104 -0.002 -0.800 0.807 sum -6.400 -1.592 0.777 6.641 Atomic orbital electron populations 1.20795 0.88479 1.03798 1.03172 1.20280 0.97938 0.92371 0.99562 1.21168 0.92590 0.99074 0.99871 1.21258 0.95482 0.96675 1.02301 1.17910 0.82895 0.94341 1.00858 1.45830 1.04132 1.51090 1.26063 1.19474 0.91715 0.92214 0.84144 1.21499 1.36797 0.97841 1.01586 0.91996 1.25460 0.95042 0.96205 0.99871 1.69981 1.37980 1.16616 1.30388 0.85725 0.78390 0.79564 0.79425 1.19090 1.21643 1.19580 1.20821 0.90260 0.77546 0.81472 1.90678 1.70752 1.48733 1.34544 1.21083 0.90512 1.02708 0.83384 0.86012 1.22808 0.97263 0.97293 1.03591 1.23883 0.94916 1.04212 0.77868 1.86642 1.69046 1.52601 1.18145 1.17766 0.78826 0.76972 0.84431 1.90967 1.67015 1.69078 1.19909 1.45129 1.35868 1.45311 1.10535 1.21127 0.95424 0.96504 1.01614 1.21127 0.92559 0.99156 1.00355 0.90236 0.90659 0.90249 0.83152 0.85819 0.95563 0.93612 0.92160 0.90713 0.83914 0.88249 0.83200 0.74096 0.87824 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.10 -2.56 5.88 -19.84 -0.12 -2.68 16 3 C -0.11 -2.93 9.69 22.25 0.22 -2.71 16 4 C -0.14 -4.57 9.31 22.39 0.21 -4.36 16 5 C 0.13 4.94 5.16 38.15 0.20 5.14 16 6 N -0.55 -20.96 2.56 -635.31 -1.63 -22.58 16 7 C 0.24 10.00 4.83 85.63 0.41 10.41 16 8 C -0.54 -23.46 6.70 25.60 0.17 -23.28 16 9 H 0.06 2.75 7.49 -2.91 -0.02 2.72 16 10 C 0.04 1.63 5.46 84.65 0.46 2.09 16 11 N -0.91 -43.79 13.29 21.44 0.28 -43.50 16 12 Si 0.94 36.15 29.54 68.60 2.03 38.17 16 13 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 14 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 16 C 0.51 19.21 6.61 87.65 0.58 19.79 16 17 O -0.57 -24.07 15.78 -3.05 -0.05 -24.11 16 18 C 0.13 4.21 2.85 44.37 0.13 4.33 16 19 H 0.12 3.73 6.20 -2.39 -0.01 3.71 16 20 C -0.17 -5.08 5.41 30.81 0.17 -4.91 16 21 C 0.06 1.58 7.20 72.15 0.52 2.10 16 22 O -0.35 -11.30 10.50 -51.18 -0.54 -11.84 16 23 C 0.67 23.92 8.55 129.95 1.11 25.03 16 24 O -0.58 -24.60 17.95 19.90 0.36 -24.24 16 25 N -0.70 -22.95 4.85 -577.03 -2.80 -25.75 16 26 C -0.13 -4.52 8.96 22.39 0.20 -4.32 16 27 C -0.11 -3.26 9.69 22.25 0.22 -3.05 16 28 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 30 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.12 3.96 7.81 -2.91 -0.02 3.94 16 33 H 0.03 1.18 7.33 -2.39 -0.02 1.16 16 34 H 0.05 1.86 6.03 -2.39 -0.01 1.84 16 35 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 36 H 0.07 2.31 8.09 -2.39 -0.02 2.29 16 37 H 0.14 4.58 4.83 -2.39 -0.01 4.57 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.42 13.53 8.51 -92.71 -0.79 12.74 16 41 H 0.10 3.87 8.05 -2.91 -0.02 3.85 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -60.91 351.47 3.11 -57.80 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.27 Total: 33.54 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.18 Total: 22.52 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -4.14 Total: -91.83 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.23 Total: -60.20 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.17 kcal Total: -60.91 3.11 -57.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858860884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.444 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds