Wall clock time and date at job start Tue Mar 31 2020 13:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.50699 * 110.54252 * 58.90850 * 3 2 1 5 5 O 1.21285 * 119.99612 * 242.32316 * 4 3 2 6 6 N 1.34770 * 120.00005 * 62.31391 * 4 3 2 7 7 C 1.39925 * 119.99995 * 173.16134 * 6 4 3 8 8 C 1.38965 * 120.03426 * 23.58934 * 7 6 4 9 9 C 1.38156 * 120.06684 * 179.97438 * 8 7 6 10 10 C 1.38167 * 120.14049 * 0.02562 * 9 8 7 11 11 C 1.38905 * 120.06878 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.03158 * 180.02562 * 11 10 9 13 13 C 1.34838 * 117.00011 * 189.74718 * 12 11 10 14 14 H 1.07993 * 119.99710 * 7.13080 * 13 12 11 15 15 C 1.38654 * 120.00005 * 187.12828 * 13 12 11 16 16 N 1.31559 * 119.99767 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47240 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 119.99741 * 17 15 13 20 20 H 1.48499 * 109.47032 * 239.99706 * 17 15 13 21 21 C 1.38715 * 120.03757 * 203.31052 * 7 6 4 22 22 C 1.54621 * 110.48705 * 296.28906 * 3 2 1 23 23 C 1.54477 * 101.76800 * 216.52711 * 22 3 2 24 24 N 1.46755 * 105.47336 * 25.41474 * 23 22 3 25 25 C 1.34417 * 111.30583 * 342.98572 * 24 23 22 26 26 O 1.21278 * 124.94922 * 180.44038 * 25 24 23 27 27 H 1.08999 * 109.47165 * 64.58580 * 1 2 3 28 28 H 1.08993 * 109.47236 * 184.58427 * 1 2 3 29 29 H 1.08997 * 109.47341 * 304.58521 * 1 2 3 30 30 H 1.09004 * 109.47443 * 239.99927 * 2 1 3 31 31 H 1.09004 * 109.47153 * 119.99976 * 2 1 3 32 32 H 0.97000 * 120.00190 * 353.16135 * 6 4 3 33 33 H 1.08000 * 119.96850 * 359.97156 * 8 7 6 34 34 H 1.08007 * 119.92996 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.96338 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99610 * 180.02562 * 16 15 13 37 37 H 1.07990 * 120.07089 * 0.02562 * 21 7 6 38 38 H 1.09008 * 110.97205 * 334.64715 * 22 3 2 39 39 H 1.09002 * 110.97234 * 98.37200 * 22 3 2 40 40 H 1.08998 * 110.24658 * 144.41560 * 23 22 3 41 41 H 1.09002 * 110.24322 * 266.41411 * 23 22 3 42 42 H 0.97011 * 124.35046 * 162.98100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5291 2.1840 1.2084 5 8 0.8082 3.1491 1.0677 6 7 1.8732 1.7745 2.4455 7 6 1.5194 2.5425 3.5603 8 6 0.4429 3.4184 3.4883 9 6 0.0927 4.1766 4.5888 10 6 0.8113 4.0672 5.7638 11 6 1.8884 3.1936 5.8422 12 8 2.5936 3.0863 6.9972 13 6 3.7412 2.3800 6.9503 14 1 4.1205 2.0284 6.0023 15 6 4.4343 2.1051 8.1194 16 7 3.9724 2.5339 9.2742 17 14 6.0245 1.1271 8.0544 18 1 6.3263 0.7659 6.6460 19 1 7.1335 1.9486 8.6026 20 1 5.8782 -0.1099 8.8629 21 6 2.2393 2.4262 4.7403 22 6 1.6155 2.1666 -1.2986 23 6 2.8469 3.0556 -1.5805 24 7 3.9761 2.3769 -0.9340 25 6 3.5521 1.4695 -0.0375 26 8 4.2763 0.7741 0.6428 27 1 -0.3633 0.4410 -0.9282 28 1 -0.3633 -1.0243 0.0821 29 1 -0.3634 0.5833 0.8460 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3662 0.9474 2.5630 33 1 -0.1205 3.5064 2.5712 34 1 -0.7447 4.8563 4.5306 35 1 0.5348 4.6610 6.6225 36 1 4.4574 2.3419 10.0919 37 1 3.0737 1.7434 4.8001 38 1 1.4552 1.4542 -2.1080 39 1 0.7251 2.7734 -1.1338 40 1 3.0182 3.1334 -2.6542 41 1 2.7042 4.0459 -1.1479 42 1 4.9088 2.5595 -1.1287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864901705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:25 Heat of formation + Delta-G solvation = -66.381085 kcal Electronic energy + Delta-G solvation = -26960.138279 eV Core-core repulsion = 23099.081054 eV Total energy + Delta-G solvation = -3861.057225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65663 -39.64188 -38.52069 -36.86964 -36.18345 -34.85269 -34.12027 -32.20386 -30.08514 -29.49912 -28.72616 -27.67773 -25.28551 -23.58708 -23.32047 -21.83620 -21.76722 -21.03968 -19.38943 -18.02460 -17.92311 -17.45128 -17.03961 -15.93988 -15.82944 -15.46500 -14.95885 -14.86045 -14.65704 -14.25974 -14.07781 -14.00654 -13.90141 -13.52554 -13.40783 -13.22261 -12.93977 -12.48719 -12.33784 -12.12908 -11.75895 -11.72552 -11.64423 -11.54100 -11.26454 -11.08687 -11.03465 -10.69804 -10.38890 -10.13103 -9.94449 -9.51855 -9.45550 -9.27709 -8.77714 -7.69042 -7.14270 -6.42327 -4.02006 1.83408 2.16766 2.39580 2.72821 3.01845 3.15170 3.16711 3.18221 3.22439 3.84084 3.99825 4.04194 4.28639 4.57354 4.62732 4.67173 4.86415 4.99420 5.04651 5.12794 5.20385 5.30709 5.39368 5.52903 5.64293 5.68233 5.72678 5.75317 5.98595 6.06861 6.08573 6.23609 6.29185 6.41362 6.62601 6.64917 6.93323 7.00198 7.16761 7.33027 7.45461 7.70121 7.83054 7.90043 8.02233 8.15652 9.03650 9.73644 10.75732 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.003865 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.757716 B = 7242.176576 C = 8339.298919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.117 4.117 4 C 0.536 3.464 5 O -0.509 6.509 6 N -0.654 5.654 7 C 0.176 3.824 8 C -0.223 4.223 9 C -0.065 4.065 10 C -0.201 4.201 11 C 0.169 3.831 12 O -0.177 6.177 13 C -0.390 4.390 14 H 0.090 0.910 15 C 0.040 3.960 16 N -0.862 5.862 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.257 4.257 22 C -0.116 4.116 23 C 0.098 3.902 24 N -0.727 5.727 25 C 0.530 3.470 26 O -0.514 6.514 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.269 0.731 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -2.748 -23.130 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.124 4.124 4 C 0.322 3.678 5 O -0.385 6.385 6 N -0.296 5.296 7 C 0.083 3.917 8 C -0.244 4.244 9 C -0.084 4.084 10 C -0.221 4.221 11 C 0.115 3.885 12 O -0.081 6.081 13 C -0.466 4.466 14 H 0.107 0.893 15 C -0.164 4.164 16 N -0.498 5.498 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.279 4.279 22 C -0.154 4.154 23 C -0.027 4.027 24 N -0.383 5.383 25 C 0.314 3.686 26 O -0.389 6.389 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.248 0.752 33 H 0.162 0.838 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.777 -2.384 -22.407 23.034 hybrid contribution 1.651 -0.847 -0.062 1.856 sum -3.126 -3.231 -22.469 22.914 Atomic orbital electron populations 1.21833 0.94129 1.02552 1.02750 1.21446 0.97070 0.91199 1.04143 1.21744 0.94880 0.99421 0.96380 1.19639 0.80716 0.84004 0.83469 1.90589 1.35509 1.27041 1.85343 1.43427 1.55574 1.25669 1.04905 1.17555 0.94650 0.93936 0.85589 1.21231 0.99793 1.02520 1.00826 1.20607 0.98026 0.97794 0.91943 1.20291 0.99063 1.03634 0.99129 1.19078 0.90817 0.92107 0.86526 1.84030 1.32809 1.64398 1.26835 1.21322 0.96428 1.33916 0.94977 0.89279 1.25266 0.99566 0.97432 0.94144 1.70048 1.38834 1.42941 0.97942 0.85688 0.80165 0.79007 0.78879 1.19062 1.20133 1.20107 1.20786 1.05379 1.08111 0.93611 1.22714 0.99419 0.98952 0.94298 1.22171 0.85311 0.96797 0.98390 1.46130 1.09905 1.40084 1.42169 1.20314 0.89545 0.79506 0.79252 1.90800 1.61172 1.43409 1.43499 0.91960 0.91714 0.92135 0.90228 0.90270 0.75188 0.83777 0.86629 0.86455 0.92106 0.85286 0.89049 0.86993 0.89721 0.90322 0.74687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.49 37.15 0.35 -0.94 16 2 C -0.10 -0.92 4.77 -26.73 -0.13 -1.04 16 3 C -0.12 -1.27 0.48 -155.67 -0.07 -1.34 16 4 C 0.54 7.77 5.13 -10.99 -0.06 7.71 16 5 O -0.51 -8.21 12.24 5.55 0.07 -8.15 16 6 N -0.65 -10.71 5.24 -9.88 -0.05 -10.76 16 7 C 0.18 3.49 6.48 -83.72 -0.54 2.95 16 8 C -0.22 -4.31 8.86 -39.34 -0.35 -4.66 16 9 C -0.06 -1.23 10.03 -39.64 -0.40 -1.63 16 10 C -0.20 -4.40 9.99 -39.36 -0.39 -4.79 16 11 C 0.17 4.19 6.63 -39.14 -0.26 3.93 16 12 O -0.18 -5.14 9.76 0.02 0.00 -5.14 16 13 C -0.39 -11.12 9.37 30.89 0.29 -10.83 16 14 H 0.09 2.40 5.46 -52.49 -0.29 2.11 16 15 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 16 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 17 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C -0.26 -5.81 8.98 -39.21 -0.35 -6.17 16 22 C -0.12 -0.89 5.14 -25.10 -0.13 -1.02 16 23 C 0.10 0.69 7.78 -3.13 -0.02 0.67 16 24 N -0.73 -6.77 6.24 -59.21 -0.37 -7.13 16 25 C 0.53 6.62 7.09 -10.86 -0.08 6.54 16 26 O -0.51 -8.22 17.84 5.56 0.10 -8.12 16 27 H 0.06 0.43 7.54 -51.93 -0.39 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.64 7.08 -51.93 -0.37 0.27 16 30 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 32 H 0.41 6.29 8.24 -40.82 -0.34 5.95 16 33 H 0.14 2.67 5.29 -52.51 -0.28 2.39 16 34 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.95 5.85 -52.49 -0.31 2.64 16 38 H 0.09 0.48 7.90 -51.92 -0.41 0.07 16 39 H 0.11 0.93 6.90 -51.93 -0.36 0.57 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.41 3.19 8.96 -40.82 -0.37 2.82 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -34.49 349.45 -6.66 -41.15 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.17 Total: 11.31 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.24 Total: -9.60 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.34 Total: -42.74 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.49 -6.66 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864901705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.236 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds