Wall clock time and date at job start Tue Mar 31 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.50699 * 110.54252 * 58.90850 * 3 2 1 5 5 O 1.21285 * 119.99612 * 242.32316 * 4 3 2 6 6 N 1.34770 * 120.00005 * 62.31391 * 4 3 2 7 7 C 1.39925 * 119.99995 * 173.16134 * 6 4 3 8 8 C 1.38965 * 120.03426 * 23.58934 * 7 6 4 9 9 C 1.38156 * 120.06684 * 179.97438 * 8 7 6 10 10 C 1.38167 * 120.14049 * 0.02562 * 9 8 7 11 11 C 1.38905 * 120.06878 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.03158 * 180.02562 * 11 10 9 13 13 C 1.34838 * 117.00011 * 189.74718 * 12 11 10 14 14 H 1.07993 * 119.99710 * 7.13080 * 13 12 11 15 15 C 1.38654 * 120.00005 * 187.12828 * 13 12 11 16 16 N 1.31559 * 119.99767 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47240 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 119.99741 * 17 15 13 20 20 H 1.48499 * 109.47032 * 239.99706 * 17 15 13 21 21 C 1.38715 * 120.03757 * 203.31052 * 7 6 4 22 22 C 1.54621 * 110.48705 * 296.28906 * 3 2 1 23 23 C 1.54477 * 101.76800 * 216.52711 * 22 3 2 24 24 N 1.46755 * 105.47336 * 25.41474 * 23 22 3 25 25 C 1.34417 * 111.30583 * 342.98572 * 24 23 22 26 26 O 1.21278 * 124.94922 * 180.44038 * 25 24 23 27 27 H 1.08999 * 109.47165 * 64.58580 * 1 2 3 28 28 H 1.08993 * 109.47236 * 184.58427 * 1 2 3 29 29 H 1.08997 * 109.47341 * 304.58521 * 1 2 3 30 30 H 1.09004 * 109.47443 * 239.99927 * 2 1 3 31 31 H 1.09004 * 109.47153 * 119.99976 * 2 1 3 32 32 H 0.97000 * 120.00190 * 353.16135 * 6 4 3 33 33 H 1.08000 * 119.96850 * 359.97156 * 8 7 6 34 34 H 1.08007 * 119.92996 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.96338 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99610 * 180.02562 * 16 15 13 37 37 H 1.07990 * 120.07089 * 0.02562 * 21 7 6 38 38 H 1.09008 * 110.97205 * 334.64715 * 22 3 2 39 39 H 1.09002 * 110.97234 * 98.37200 * 22 3 2 40 40 H 1.08998 * 110.24658 * 144.41560 * 23 22 3 41 41 H 1.09002 * 110.24322 * 266.41411 * 23 22 3 42 42 H 0.97011 * 124.35046 * 162.98100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5291 2.1840 1.2084 5 8 0.8082 3.1491 1.0677 6 7 1.8732 1.7745 2.4455 7 6 1.5194 2.5425 3.5603 8 6 0.4429 3.4184 3.4883 9 6 0.0927 4.1766 4.5888 10 6 0.8113 4.0672 5.7638 11 6 1.8884 3.1936 5.8422 12 8 2.5936 3.0863 6.9972 13 6 3.7412 2.3800 6.9503 14 1 4.1205 2.0284 6.0023 15 6 4.4343 2.1051 8.1194 16 7 3.9724 2.5339 9.2742 17 14 6.0245 1.1271 8.0544 18 1 6.3263 0.7659 6.6460 19 1 7.1335 1.9486 8.6026 20 1 5.8782 -0.1099 8.8629 21 6 2.2393 2.4262 4.7403 22 6 1.6155 2.1666 -1.2986 23 6 2.8469 3.0556 -1.5805 24 7 3.9761 2.3769 -0.9340 25 6 3.5521 1.4695 -0.0375 26 8 4.2763 0.7741 0.6428 27 1 -0.3633 0.4410 -0.9282 28 1 -0.3633 -1.0243 0.0821 29 1 -0.3634 0.5833 0.8460 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.3662 0.9474 2.5630 33 1 -0.1205 3.5064 2.5712 34 1 -0.7447 4.8563 4.5306 35 1 0.5348 4.6610 6.6225 36 1 4.4574 2.3419 10.0919 37 1 3.0737 1.7434 4.8001 38 1 1.4552 1.4542 -2.1080 39 1 0.7251 2.7734 -1.1338 40 1 3.0182 3.1334 -2.6542 41 1 2.7042 4.0459 -1.1479 42 1 4.9088 2.5595 -1.1287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864901705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:24 Heat of formation + Delta-G solvation = -92.194093 kcal Electronic energy + Delta-G solvation = -26961.257615 eV Core-core repulsion = 23099.081054 eV Total energy + Delta-G solvation = -3862.176561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.67408 -41.06156 -40.08979 -38.27856 -37.42932 -35.92762 -35.30516 -34.25651 -31.09714 -30.81382 -30.33107 -28.63933 -27.32410 -24.67376 -24.14591 -23.56343 -22.57996 -22.45550 -20.72509 -19.66916 -19.34187 -18.55778 -18.27318 -17.37123 -16.98699 -16.79257 -16.55204 -16.01632 -15.94885 -15.65625 -15.52534 -15.43076 -14.94451 -14.77741 -14.63093 -14.38433 -14.23203 -13.91634 -13.58213 -13.31751 -13.15885 -12.96738 -12.78531 -12.77875 -12.43174 -12.35628 -12.23160 -12.13784 -11.79738 -11.59264 -11.38033 -11.09237 -10.81072 -10.62124 -10.18558 -9.38417 -8.90377 -8.50457 -6.19237 0.31006 0.67123 1.08078 1.32167 1.39068 1.49774 1.50229 1.92097 2.14639 2.27681 2.79556 3.06078 3.12884 3.23804 3.43043 3.47017 3.73501 4.00658 4.09513 4.27092 4.32616 4.34729 4.37646 4.44148 4.60420 4.63527 4.71715 4.73687 4.97397 5.00286 5.03270 5.06546 5.08733 5.09641 5.30690 5.34265 5.40599 5.62934 5.65988 5.67849 5.85543 5.98323 6.17285 6.30231 6.85094 6.94275 7.04819 7.73330 8.72586 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.003865 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.757716 B = 7242.176576 C = 8339.298919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.111 4.111 4 C 0.536 3.464 5 O -0.522 6.522 6 N -0.657 5.657 7 C 0.182 3.818 8 C -0.214 4.214 9 C -0.049 4.049 10 C -0.214 4.214 11 C 0.135 3.865 12 O -0.225 6.225 13 C -0.412 4.412 14 H 0.093 0.907 15 C -0.017 4.017 16 N -0.915 5.915 17 Si 1.014 2.986 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.264 1.264 21 C -0.268 4.268 22 C -0.110 4.110 23 C 0.094 3.906 24 N -0.717 5.717 25 C 0.519 3.481 26 O -0.559 6.559 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.416 0.584 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.274 0.726 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -3.024 -27.027 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.118 4.118 4 C 0.324 3.676 5 O -0.399 6.399 6 N -0.300 5.300 7 C 0.087 3.913 8 C -0.234 4.234 9 C -0.068 4.068 10 C -0.234 4.234 11 C 0.084 3.916 12 O -0.132 6.132 13 C -0.489 4.489 14 H 0.110 0.890 15 C -0.215 4.215 16 N -0.553 5.553 17 Si 0.833 3.167 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.189 1.189 21 C -0.290 4.290 22 C -0.148 4.148 23 C -0.029 4.029 24 N -0.371 5.371 25 C 0.303 3.697 26 O -0.438 6.438 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.253 0.747 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.436 -2.630 -26.399 27.081 hybrid contribution 1.647 -0.658 0.874 1.977 sum -3.789 -3.288 -25.525 26.013 Atomic orbital electron populations 1.21818 0.93327 1.03051 1.02651 1.21510 0.97626 0.90054 1.04621 1.21794 0.93853 1.00382 0.95794 1.20320 0.79892 0.83799 0.83601 1.90552 1.36093 1.27660 1.85577 1.43534 1.55927 1.25623 1.04881 1.17641 0.94030 0.93897 0.85746 1.21613 0.98968 1.01380 1.01436 1.21060 0.98059 0.97372 0.90282 1.20547 0.98764 1.03427 1.00616 1.19607 0.91984 0.93673 0.86305 1.83981 1.33849 1.66302 1.29041 1.21718 0.97232 1.34265 0.95646 0.88957 1.26494 1.03320 0.98314 0.93381 1.70173 1.41074 1.45239 0.98855 0.84600 0.75200 0.77549 0.79311 1.18235 1.19039 1.18869 1.20761 1.05668 1.08132 0.94399 1.22854 0.99351 0.99362 0.93236 1.22419 0.84169 0.95851 1.00510 1.46222 1.11119 1.38776 1.41013 1.20650 0.90083 0.79650 0.79300 1.90777 1.62226 1.45398 1.45360 0.89914 0.90588 0.94677 0.87806 0.91886 0.74739 0.82068 0.82320 0.86081 0.91686 0.86474 0.85590 0.87236 0.85659 0.91147 0.73848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.49 71.98 0.68 -1.44 16 2 C -0.10 -1.60 4.77 30.59 0.15 -1.45 16 3 C -0.11 -2.16 0.48 -52.93 -0.03 -2.18 16 4 C 0.54 14.74 5.13 87.66 0.45 15.19 16 5 O -0.52 -15.69 12.24 -3.04 -0.04 -15.73 16 6 N -0.66 -21.38 5.24 -303.56 -1.59 -22.97 16 7 C 0.18 7.20 6.48 38.14 0.25 7.44 16 8 C -0.21 -7.89 8.86 22.42 0.20 -7.69 16 9 C -0.05 -1.79 10.03 22.23 0.22 -1.56 16 10 C -0.21 -9.45 9.99 22.41 0.22 -9.23 16 11 C 0.14 7.04 6.63 22.56 0.15 7.19 16 12 O -0.23 -13.90 9.76 -22.84 -0.22 -14.13 16 13 C -0.41 -24.81 9.37 67.92 0.64 -24.18 16 14 H 0.09 5.25 5.46 -2.91 -0.02 5.24 16 15 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 16 N -0.92 -56.84 13.67 21.61 0.30 -56.54 16 17 Si 1.01 44.40 29.55 68.60 2.03 46.43 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C -0.27 -12.58 8.98 22.51 0.20 -12.38 16 22 C -0.11 -1.25 5.14 31.65 0.16 -1.09 16 23 C 0.09 0.97 7.78 86.83 0.68 1.65 16 24 N -0.72 -11.57 6.24 -459.82 -2.87 -14.44 16 25 C 0.52 12.18 7.09 87.90 0.62 12.80 16 26 O -0.56 -17.79 17.84 -3.02 -0.05 -17.85 16 27 H 0.08 0.82 7.54 -2.39 -0.02 0.80 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.03 0.67 7.08 -2.39 -0.02 0.65 16 30 H 0.10 1.19 8.13 -2.38 -0.02 1.17 16 31 H 0.06 1.22 7.68 -2.38 -0.02 1.20 16 32 H 0.42 12.95 8.24 -92.71 -0.76 12.19 16 33 H 0.16 5.52 5.29 -3.33 -0.02 5.50 16 34 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.12 5.68 5.85 -2.92 -0.02 5.67 16 38 H 0.13 0.61 7.90 -2.38 -0.02 0.60 16 39 H 0.11 1.39 6.90 -2.39 -0.02 1.38 16 40 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.42 5.58 8.96 -92.70 -0.83 4.75 16 Total: -1.00 -80.02 349.45 2.10 -77.92 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.51 Total: 34.75 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.06 Total: -17.45 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -4.16 Total: -93.95 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.31 Total: -47.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -80.02 2.10 -77.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864901705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.276 kcal (2) G-P(sol) polarization free energy of solvation -80.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds