Wall clock time and date at job start Tue Mar 31 2020 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.92519 * 2 1 4 4 C 1.38118 * 120.06665 * 180.02562 * 3 2 1 5 5 C 1.38875 * 119.92896 * 359.97367 * 4 3 2 6 6 N 1.39921 * 120.06622 * 180.02562 * 5 4 3 7 7 C 1.46502 * 119.99884 * 292.12231 * 6 5 4 8 8 C 1.50700 * 109.47235 * 270.00519 * 7 6 5 9 9 H 1.07996 * 120.00023 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99699 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46840 * 59.99645 * 12 10 8 14 14 H 1.48497 * 109.47209 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47025 * 300.00043 * 12 10 8 16 16 C 1.34773 * 120.00146 * 112.12771 * 6 5 4 17 17 O 1.21284 * 120.00111 * 355.26263 * 16 6 5 18 18 C 1.50705 * 119.99976 * 175.26084 * 16 6 5 19 19 N 1.46504 * 109.46883 * 180.02562 * 18 16 6 20 20 C 1.47086 * 125.56071 * 90.00335 * 19 18 16 21 21 C 1.54095 * 103.77720 * 179.97438 * 20 19 18 22 22 O 1.45695 * 104.00629 * 359.97438 * 21 20 19 23 23 C 1.33773 * 109.48023 * 359.76052 * 22 21 20 24 24 O 1.21511 * 123.07604 * 180.24331 * 23 22 21 25 25 C 1.38868 * 119.85992 * 0.27809 * 5 4 3 26 26 C 1.38118 * 119.92732 * 359.47116 * 25 5 4 27 27 H 1.08994 * 109.47495 * 90.00165 * 1 2 3 28 28 H 1.09007 * 109.47046 * 210.00010 * 1 2 3 29 29 H 1.08999 * 109.47466 * 330.00066 * 1 2 3 30 30 H 1.07995 * 119.96906 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03073 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47047 * 30.00748 * 7 6 5 33 33 H 1.09005 * 109.47087 * 150.00500 * 7 6 5 34 34 H 0.97001 * 119.99784 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.47440 * 300.00075 * 18 16 6 36 36 H 1.09000 * 109.47078 * 60.00423 * 18 16 6 37 37 H 1.08998 * 110.56326 * 298.54961 * 20 19 18 38 38 H 1.08997 * 110.56672 * 61.40462 * 20 19 18 39 39 H 1.08995 * 110.52247 * 118.63586 * 21 20 19 40 40 H 1.09009 * 110.51816 * 241.22955 * 21 20 19 41 41 H 1.08000 * 120.03268 * 179.70448 * 25 5 4 42 42 H 1.08003 * 119.96191 * 180.25606 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6731 0.0002 -0.0005 7 6 6.4055 0.4780 -1.1759 8 6 6.6567 -0.6743 -2.1140 9 1 6.3062 -1.6637 -1.8600 10 6 7.3349 -0.4656 -3.2962 11 7 7.7622 0.7392 -3.6053 12 14 7.6469 -1.8941 -4.4588 13 1 6.3495 -2.4760 -4.8872 14 1 8.3892 -1.4097 -5.6502 15 1 8.4493 -2.9322 -3.7633 16 6 6.3470 -0.4394 1.0807 17 8 5.7438 -0.7541 2.0847 18 6 7.8502 -0.5400 1.0421 19 7 8.3393 -1.0402 2.3293 20 6 8.5394 -2.4552 2.6770 21 6 9.0586 -2.4070 4.1271 22 8 9.0968 -0.9847 4.4408 23 6 8.6837 -0.2826 3.3797 24 8 8.6225 0.9310 3.3705 25 6 3.5781 -1.2017 -0.0058 26 6 2.1969 -1.1983 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1383 -0.0010 32 1 5.8164 1.2401 -1.6860 33 1 7.3580 0.9049 -0.8616 34 1 8.2390 0.8861 -4.4372 35 1 8.1482 -1.2260 0.2492 36 1 8.2754 0.4449 0.8493 37 1 7.5962 -2.9991 2.6259 38 1 9.2808 -2.9099 2.0199 39 1 8.3735 -2.9280 4.7958 40 1 10.0566 -2.8410 4.1902 41 1 4.1164 -2.1380 -0.0106 42 1 1.6552 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874246638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:25 Heat of formation + Delta-G solvation = -69.624209 kcal Electronic energy + Delta-G solvation = -26916.797391 eV Core-core repulsion = 23055.599533 eV Total energy + Delta-G solvation = -3861.197858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40088 -39.89657 -38.23004 -36.93097 -35.45892 -34.97077 -32.92470 -31.60567 -30.57858 -30.15266 -27.99677 -27.50776 -25.64599 -23.62369 -23.25482 -22.16727 -21.98234 -20.74327 -19.02675 -17.50321 -17.05515 -16.90233 -16.62210 -16.51679 -15.94261 -15.24158 -15.04024 -14.78918 -14.51749 -14.11568 -14.00571 -13.88368 -13.59323 -13.44455 -13.24311 -13.07588 -12.61992 -12.50058 -12.32981 -12.14839 -11.76063 -11.67696 -11.48577 -11.32953 -11.08251 -10.86517 -10.75708 -10.62149 -10.41378 -10.32183 -9.95156 -9.69965 -8.76072 -8.61388 -8.53404 -8.48328 -7.66561 -6.29465 -4.38780 1.68000 1.81007 2.49092 2.95256 3.12214 3.15464 3.22482 3.24483 3.51311 3.80598 4.12450 4.18602 4.24294 4.64841 4.81244 5.03764 5.13225 5.13706 5.18214 5.19851 5.35204 5.36894 5.51434 5.55127 5.70184 5.77902 5.79862 5.87579 5.91741 6.03774 6.10818 6.38493 6.42015 6.58217 6.76261 6.90659 6.91938 7.07007 7.20065 7.49227 7.55683 7.65367 7.89158 8.05713 8.21213 8.62974 8.80374 9.29482 10.77198 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.005649 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.848208 B = 4955.388623 C = 7409.008730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.119 4.119 5 C 0.171 3.829 6 N -0.558 5.558 7 C 0.236 3.764 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.504 3.496 17 O -0.550 6.550 18 C 0.135 3.865 19 N -0.612 5.612 20 C 0.067 3.933 21 C 0.044 3.956 22 O -0.331 6.331 23 C 0.648 3.352 24 O -0.522 6.522 25 C -0.102 4.102 26 C -0.113 4.113 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.268 0.732 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -6.940 7.605 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.080 3.920 6 N -0.286 5.286 7 C 0.117 3.883 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.292 3.708 17 O -0.428 6.428 18 C 0.012 3.988 19 N -0.358 5.358 20 C -0.057 4.057 21 C -0.031 4.031 22 O -0.242 6.242 23 C 0.402 3.598 24 O -0.406 6.406 25 C -0.122 4.122 26 C -0.132 4.132 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.716 -6.255 8.188 10.954 hybrid contribution 0.221 -0.917 -1.102 1.451 sum -3.495 -7.173 7.086 10.671 Atomic orbital electron populations 1.20716 0.91611 1.02231 1.01898 1.19799 0.95697 0.93234 1.01698 1.20780 0.93469 0.97328 1.01528 1.21210 0.94212 0.97551 1.00855 1.17535 0.83368 0.92895 0.98238 1.45918 1.03433 1.62312 1.16946 1.19638 0.91887 0.95787 0.80944 1.21369 1.37591 0.95062 1.04266 0.91970 1.24935 0.95080 0.95977 0.97571 1.69908 1.37275 1.20625 1.24588 0.86551 0.78553 0.82137 0.80225 1.20063 1.21032 1.20037 1.20984 0.90384 0.76896 0.82560 1.90644 1.70306 1.50126 1.31757 1.21226 0.91401 1.03848 0.82373 1.47564 1.67203 1.06454 1.14587 1.22807 1.03229 0.84048 0.95597 1.24233 1.03748 0.79492 0.95612 1.87245 1.80714 1.19876 1.36316 1.18381 0.76497 0.85948 0.78990 1.91033 1.58653 1.09279 1.81670 1.21159 0.94002 0.97498 0.99549 1.20790 0.93554 0.97288 1.01572 0.91541 0.91963 0.91926 0.86229 0.85967 0.93971 0.93915 0.92217 0.85214 0.86310 0.88876 0.88838 0.87859 0.87794 0.86381 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.10 -1.55 5.88 -104.59 -0.62 -2.16 16 3 C -0.11 -1.77 9.69 -39.61 -0.38 -2.15 16 4 C -0.12 -2.19 9.69 -39.39 -0.38 -2.57 16 5 C 0.17 3.46 4.74 -83.70 -0.40 3.07 16 6 N -0.56 -11.77 2.50 -114.74 -0.29 -12.06 16 7 C 0.24 5.40 4.88 -5.19 -0.03 5.37 16 8 C -0.54 -13.27 9.16 -34.44 -0.32 -13.59 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 12 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.50 10.40 7.60 -10.98 -0.08 10.31 16 17 O -0.55 -12.45 16.20 5.55 0.09 -12.36 16 18 C 0.14 2.41 5.16 -5.19 -0.03 2.38 16 19 N -0.61 -9.92 2.45 -180.22 -0.44 -10.36 16 20 C 0.07 0.73 7.70 -3.15 -0.02 0.71 16 21 C 0.04 0.42 8.23 37.73 0.31 0.73 16 22 O -0.33 -5.08 11.09 -37.84 -0.42 -5.50 16 23 C 0.65 11.99 8.85 53.71 0.48 12.46 16 24 O -0.52 -11.72 17.54 -19.12 -0.34 -12.06 16 25 C -0.10 -1.92 9.56 -39.39 -0.38 -2.29 16 26 C -0.11 -1.80 9.69 -39.61 -0.38 -2.18 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.04 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.04 0.99 6.47 -51.93 -0.34 0.65 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.13 2.14 7.91 -51.93 -0.41 1.73 16 36 H 0.12 2.19 7.04 -51.93 -0.37 1.82 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 42 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -32.91 364.73 -7.86 -40.76 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.71 Total: 3.45 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.96 Total: 10.87 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.01 Total: -45.12 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.66 Total: -29.92 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.91 -7.86 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874246638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.861 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds