Wall clock time and date at job start Tue Mar 31 2020 13:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.92519 * 2 1 4 4 C 1.38118 * 120.06665 * 180.02562 * 3 2 1 5 5 C 1.38875 * 119.92896 * 359.97367 * 4 3 2 6 6 N 1.39921 * 120.06622 * 180.02562 * 5 4 3 7 7 C 1.46502 * 119.99884 * 292.12231 * 6 5 4 8 8 C 1.50700 * 109.47235 * 270.00519 * 7 6 5 9 9 H 1.07996 * 120.00023 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99699 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46840 * 59.99645 * 12 10 8 14 14 H 1.48497 * 109.47209 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47025 * 300.00043 * 12 10 8 16 16 C 1.34773 * 120.00146 * 112.12771 * 6 5 4 17 17 O 1.21284 * 120.00111 * 355.26263 * 16 6 5 18 18 C 1.50705 * 119.99976 * 175.26084 * 16 6 5 19 19 N 1.46504 * 109.46883 * 180.02562 * 18 16 6 20 20 C 1.47086 * 125.56071 * 90.00335 * 19 18 16 21 21 C 1.54095 * 103.77720 * 179.97438 * 20 19 18 22 22 O 1.45695 * 104.00629 * 359.97438 * 21 20 19 23 23 C 1.33773 * 109.48023 * 359.76052 * 22 21 20 24 24 O 1.21511 * 123.07604 * 180.24331 * 23 22 21 25 25 C 1.38868 * 119.85992 * 0.27809 * 5 4 3 26 26 C 1.38118 * 119.92732 * 359.47116 * 25 5 4 27 27 H 1.08994 * 109.47495 * 90.00165 * 1 2 3 28 28 H 1.09007 * 109.47046 * 210.00010 * 1 2 3 29 29 H 1.08999 * 109.47466 * 330.00066 * 1 2 3 30 30 H 1.07995 * 119.96906 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03073 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47047 * 30.00748 * 7 6 5 33 33 H 1.09005 * 109.47087 * 150.00500 * 7 6 5 34 34 H 0.97001 * 119.99784 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.47440 * 300.00075 * 18 16 6 36 36 H 1.09000 * 109.47078 * 60.00423 * 18 16 6 37 37 H 1.08998 * 110.56326 * 298.54961 * 20 19 18 38 38 H 1.08997 * 110.56672 * 61.40462 * 20 19 18 39 39 H 1.08995 * 110.52247 * 118.63586 * 21 20 19 40 40 H 1.09009 * 110.51816 * 241.22955 * 21 20 19 41 41 H 1.08000 * 120.03268 * 179.70448 * 25 5 4 42 42 H 1.08003 * 119.96191 * 180.25606 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6731 0.0002 -0.0005 7 6 6.4055 0.4780 -1.1759 8 6 6.6567 -0.6743 -2.1140 9 1 6.3062 -1.6637 -1.8600 10 6 7.3349 -0.4656 -3.2962 11 7 7.7622 0.7392 -3.6053 12 14 7.6469 -1.8941 -4.4588 13 1 6.3495 -2.4760 -4.8872 14 1 8.3892 -1.4097 -5.6502 15 1 8.4493 -2.9322 -3.7633 16 6 6.3470 -0.4394 1.0807 17 8 5.7438 -0.7541 2.0847 18 6 7.8502 -0.5400 1.0421 19 7 8.3393 -1.0402 2.3293 20 6 8.5394 -2.4552 2.6770 21 6 9.0586 -2.4070 4.1271 22 8 9.0968 -0.9847 4.4408 23 6 8.6837 -0.2826 3.3797 24 8 8.6225 0.9310 3.3705 25 6 3.5781 -1.2017 -0.0058 26 6 2.1969 -1.1983 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1383 -0.0010 32 1 5.8164 1.2401 -1.6860 33 1 7.3580 0.9049 -0.8616 34 1 8.2390 0.8861 -4.4372 35 1 8.1482 -1.2260 0.2492 36 1 8.2754 0.4449 0.8493 37 1 7.5962 -2.9991 2.6259 38 1 9.2808 -2.9099 2.0199 39 1 8.3735 -2.9280 4.7958 40 1 10.0566 -2.8410 4.1902 41 1 4.1164 -2.1380 -0.0106 42 1 1.6552 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874246638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:24 Heat of formation + Delta-G solvation = -89.035151 kcal Electronic energy + Delta-G solvation = -26917.639113 eV Core-core repulsion = 23055.599533 eV Total energy + Delta-G solvation = -3862.039579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64629 -41.40408 -39.62822 -38.35732 -36.99787 -36.37788 -34.72941 -32.96105 -31.90372 -31.23627 -29.37506 -29.19728 -26.91082 -25.09264 -24.56220 -23.55972 -23.33014 -22.05292 -20.49058 -18.85618 -18.72464 -18.36061 -18.07306 -17.76989 -17.49930 -16.74946 -16.40160 -16.23362 -16.07115 -15.44715 -15.30989 -15.08044 -14.79720 -14.58331 -14.48508 -14.38083 -14.32964 -13.85463 -13.53482 -13.40582 -13.14710 -13.01641 -12.94775 -12.78371 -12.58908 -12.46996 -12.11292 -12.05365 -11.90086 -11.74513 -11.72030 -11.23182 -10.62947 -10.09886 -9.95601 -9.87479 -9.15436 -8.21777 -6.38297 0.33009 0.46932 1.19315 1.43883 1.45696 1.50909 1.54862 1.57330 2.17094 2.41739 2.59064 2.79494 3.09108 3.34492 3.59890 3.64833 3.93553 3.98959 4.04167 4.07093 4.31920 4.35915 4.46525 4.47536 4.50418 4.55522 4.73542 4.77280 4.82108 4.89282 4.91221 5.04474 5.13521 5.16560 5.19283 5.38628 5.54451 5.66180 5.67399 5.76340 5.98330 6.12776 6.26288 6.38030 6.71933 6.81993 7.13797 7.34570 8.84149 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.005649 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.848208 B = 4955.388623 C = 7409.008730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.141 4.141 5 C 0.127 3.873 6 N -0.557 5.557 7 C 0.251 3.749 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.024 3.976 11 N -0.920 5.920 12 Si 0.960 3.040 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.260 1.260 16 C 0.500 3.500 17 O -0.574 6.574 18 C 0.143 3.857 19 N -0.612 5.612 20 C 0.059 3.941 21 C 0.043 3.957 22 O -0.342 6.342 23 C 0.643 3.357 24 O -0.578 6.578 25 C -0.121 4.121 26 C -0.113 4.113 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.017 0.983 33 H 0.035 0.965 34 H 0.269 0.731 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -9.426 7.611 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.160 4.160 5 C 0.037 3.963 6 N -0.285 5.285 7 C 0.132 3.868 8 C -0.584 4.584 9 H 0.079 0.921 10 C -0.177 4.177 11 N -0.558 5.558 12 Si 0.785 3.215 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.184 1.184 16 C 0.289 3.711 17 O -0.454 6.454 18 C 0.019 3.981 19 N -0.358 5.358 20 C -0.062 4.062 21 C -0.031 4.031 22 O -0.252 6.252 23 C 0.397 3.603 24 O -0.466 6.466 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.894 -8.803 8.214 12.997 hybrid contribution 0.471 -0.187 -1.056 1.171 sum -4.423 -8.990 7.158 12.313 Atomic orbital electron populations 1.20800 0.88172 1.03906 1.03285 1.20324 0.98094 0.92289 0.99054 1.21167 0.92360 0.99307 1.00239 1.21361 0.95781 0.96785 1.02101 1.17928 0.83025 0.94321 1.01051 1.45843 1.04190 1.62053 1.16386 1.19285 0.91194 0.94937 0.81377 1.21523 1.37174 0.95148 1.04559 0.92061 1.25680 0.94811 0.98180 0.98990 1.70022 1.38156 1.22523 1.25133 0.85578 0.78347 0.79440 0.78184 1.20163 1.21058 1.18446 1.21437 0.91404 0.76279 0.81999 1.90606 1.71083 1.51396 1.32323 1.21079 0.89487 1.03799 0.83777 1.47646 1.66045 1.08665 1.13411 1.23232 1.04564 0.81031 0.97377 1.24782 1.06933 0.76510 0.94836 1.87210 1.80068 1.22815 1.35090 1.18591 0.76200 0.85663 0.79816 1.90972 1.60966 1.11840 1.82865 1.21258 0.95477 0.96561 1.00734 1.21182 0.92472 0.99244 1.00266 0.90085 0.90302 0.90367 0.83277 0.86765 0.96454 0.94669 0.92195 0.83760 0.87652 0.88710 0.85457 0.85518 0.83607 0.87115 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 10.01 71.24 0.71 -1.18 16 2 C -0.10 -2.67 5.88 -19.84 -0.12 -2.79 16 3 C -0.11 -3.41 9.69 22.25 0.22 -3.20 16 4 C -0.14 -5.37 9.69 22.39 0.22 -5.15 16 5 C 0.13 5.35 4.74 38.15 0.18 5.53 16 6 N -0.56 -24.65 2.50 -635.30 -1.59 -26.24 16 7 C 0.25 12.08 4.88 85.63 0.42 12.50 16 8 C -0.55 -27.09 9.16 25.60 0.23 -26.86 16 9 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 10 C 0.02 1.23 5.46 84.65 0.46 1.69 16 11 N -0.92 -49.53 13.29 21.45 0.28 -49.24 16 12 Si 0.96 39.57 29.54 68.60 2.03 41.60 16 13 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 C 0.50 21.47 7.60 87.66 0.67 22.14 16 17 O -0.57 -26.84 16.20 -3.04 -0.05 -26.88 16 18 C 0.14 5.26 5.16 85.63 0.44 5.71 16 19 N -0.61 -19.89 2.45 -955.81 -2.34 -22.23 16 20 C 0.06 1.18 7.70 86.64 0.67 1.85 16 21 C 0.04 0.68 8.23 72.35 0.60 1.28 16 22 O -0.34 -10.23 11.09 -47.33 -0.52 -10.75 16 23 C 0.64 24.28 8.85 129.91 1.15 25.43 16 24 O -0.58 -27.32 17.54 19.65 0.34 -26.97 16 25 C -0.12 -4.56 9.56 22.39 0.21 -4.35 16 26 C -0.11 -3.41 9.69 22.25 0.22 -3.20 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.20 8.08 -2.38 -0.02 1.18 16 29 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 32 H 0.02 0.91 7.86 -2.39 -0.02 0.89 16 33 H 0.04 1.73 6.47 -2.38 -0.02 1.71 16 34 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.14 4.80 7.91 -2.39 -0.02 4.78 16 36 H 0.11 4.15 7.04 -2.39 -0.02 4.13 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.15 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -75.08 364.73 5.45 -69.63 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.03 Total: 21.69 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 6.27 Total: 29.41 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -3.65 Total: -97.72 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -0.23 Total: -64.61 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -75.08 5.45 -69.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874246638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.401 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds