Wall clock time and date at job start Tue Mar 31 2020 13:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.76229 * 2 1 4 4 C 1.54369 * 110.70431 * 236.81555 * 2 1 3 5 5 O 1.45952 * 105.06635 * 223.79248 * 4 2 1 6 6 C 1.34560 * 108.40456 * 32.43837 * 5 4 2 7 7 O 1.20827 * 125.94259 * 146.64025 * 6 5 4 8 8 C 1.51506 * 108.10889 * 326.66352 * 6 5 4 9 9 H 1.09008 * 110.40149 * 139.28797 * 8 6 5 10 10 N 1.46500 * 110.40301 * 261.59380 * 8 6 5 11 11 C 1.34775 * 119.99752 * 273.54417 * 10 8 6 12 12 O 1.21581 * 120.00535 * 0.02562 * 11 10 8 13 13 N 1.34786 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00018 * 175.50729 * 13 11 10 15 15 C 1.39484 * 119.83246 * 35.89436 * 14 13 11 16 16 C 1.36366 * 120.17014 * 179.97438 * 15 14 13 17 17 C 1.40872 * 119.82680 * 0.02562 * 16 15 14 18 18 C 1.41155 * 120.16438 * 179.97438 * 17 16 15 19 19 H 1.08009 * 120.00037 * 205.47256 * 18 17 16 20 20 C 1.39890 * 120.00197 * 25.47296 * 18 17 16 21 21 N 1.30888 * 119.99577 * 17.01761 * 20 18 17 22 22 Si 1.86802 * 120.00228 * 197.01498 * 20 18 17 23 23 H 1.48496 * 109.46771 * 60.00289 * 22 20 18 24 24 H 1.48498 * 109.46795 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46964 * 299.99913 * 22 20 18 26 26 C 1.40875 * 119.67125 * 359.97438 * 17 16 15 27 27 C 1.36369 * 119.82669 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47472 * 296.81339 * 1 2 3 29 29 H 1.09001 * 109.46538 * 56.81322 * 1 2 3 30 30 H 1.09002 * 109.47015 * 176.80895 * 1 2 3 31 31 H 1.08996 * 109.47274 * 183.18691 * 3 2 1 32 32 H 1.08998 * 109.47060 * 303.19052 * 3 2 1 33 33 H 1.09003 * 109.46697 * 63.18397 * 3 2 1 34 34 H 1.08990 * 110.32596 * 104.89200 * 4 2 1 35 35 H 1.09007 * 110.40665 * 342.73039 * 4 2 1 36 36 H 0.97001 * 120.00009 * 93.54816 * 10 8 6 37 37 H 0.97001 * 119.99575 * 355.50711 * 13 11 10 38 38 H 1.08001 * 119.91388 * 359.97438 * 15 14 13 39 39 H 1.07999 * 120.09278 * 179.74477 * 16 15 14 40 40 H 0.97001 * 119.99897 * 180.02562 * 21 20 18 41 41 H 1.08003 * 120.08101 * 179.97438 * 26 17 16 42 42 H 1.08000 * 119.91140 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0758 -0.7903 -1.2085 5 8 3.1615 -1.6040 -0.6706 6 6 2.8555 -1.9367 0.5968 7 8 3.1506 -2.9696 1.1499 8 6 2.0761 -0.7909 1.2093 9 1 1.2560 -1.1718 1.8182 10 7 2.9598 0.0546 2.0157 11 6 3.1947 -0.2544 3.3063 12 8 2.6736 -1.2350 3.8013 13 7 4.0074 0.5237 4.0484 14 6 4.1766 0.2593 5.4050 15 6 4.1936 -1.0599 5.8580 16 6 4.3593 -1.3268 7.1850 17 6 4.5130 -0.2660 8.0991 18 6 4.6845 -0.5341 9.4743 19 1 4.3984 0.2048 10.2084 20 6 5.2250 -1.7568 9.8866 21 7 5.8724 -2.5075 9.0318 22 14 5.0230 -2.3179 11.6568 23 1 3.5777 -2.4389 11.9757 24 1 5.6810 -3.6371 11.8360 25 1 5.6491 -1.3243 12.5655 26 6 4.4948 1.0636 7.6340 27 6 4.3282 1.3147 6.3041 28 1 -0.3634 0.4635 0.9171 29 1 -0.3632 0.5625 -0.8601 30 1 -0.3633 -1.0261 -0.0572 31 1 3.1606 1.4067 -0.0571 32 1 1.6751 1.9698 -0.8600 33 1 1.7676 1.9347 0.9172 34 1 2.4553 -0.1067 -1.9678 35 1 1.2975 -1.4276 -1.6287 36 1 3.3759 0.8368 1.6207 37 1 4.4744 1.2680 3.6374 38 1 4.0751 -1.8720 5.1559 39 1 4.3681 -2.3485 7.5348 40 1 6.2468 -3.3554 9.3176 41 1 4.6117 1.8819 8.3292 42 1 4.3144 2.3335 5.9460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878086294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:09 Heat of formation + Delta-G solvation = -75.148172 kcal Electronic energy + Delta-G solvation = -26433.651357 eV Core-core repulsion = 22572.213962 eV Total energy + Delta-G solvation = -3861.437395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70134 -39.68937 -37.89936 -37.41848 -36.01725 -34.41581 -33.54908 -32.77017 -29.44435 -29.11890 -28.32078 -27.41238 -27.03547 -24.76640 -22.06798 -21.25820 -20.89751 -20.41134 -19.96233 -18.17472 -17.51169 -17.24868 -17.15531 -16.72072 -16.01177 -15.25470 -15.02314 -14.85810 -14.62057 -14.19781 -14.15535 -13.89697 -13.79639 -13.13250 -13.03314 -12.65730 -12.61038 -12.54818 -12.03110 -11.85267 -11.76263 -11.74133 -11.51197 -11.33215 -11.08241 -11.05321 -10.86577 -10.73836 -10.59195 -10.01740 -9.68252 -9.44960 -9.09149 -8.97889 -8.86526 -7.46287 -6.95388 -6.67770 -4.25214 1.69195 2.67215 2.84089 3.10543 3.10888 3.13866 3.18837 3.21849 3.58629 3.61317 3.92965 3.97751 4.11429 4.15809 4.57578 4.62546 4.70353 4.88075 4.93363 5.11440 5.14594 5.26377 5.30575 5.44723 5.62975 5.70225 5.75523 6.17727 6.29179 6.39718 6.45763 6.77329 6.86418 7.09768 7.14455 7.30097 7.34086 7.37015 7.67571 7.85558 8.04232 8.11414 8.31436 8.45205 8.69015 8.93297 8.94175 9.10456 10.24176 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002767 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.232424 B =10115.214101 C =10670.771615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.145 4.145 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.466 3.534 7 O -0.417 6.417 8 C 0.119 3.881 9 H 0.129 0.871 10 N -0.735 5.735 11 C 0.691 3.309 12 O -0.561 6.561 13 N -0.661 5.661 14 C 0.007 3.993 15 C -0.085 4.085 16 C -0.154 4.154 17 C 0.106 3.894 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.791 5.791 22 Si 0.909 3.091 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.217 4.217 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.390 0.610 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.281 0.719 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 8.206 -20.098 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.014 4.014 5 O -0.271 6.271 6 C 0.301 3.699 7 O -0.294 6.294 8 C 0.010 3.990 9 H 0.146 0.854 10 N -0.398 5.398 11 C 0.391 3.609 12 O -0.436 6.436 13 N -0.307 5.307 14 C -0.085 4.085 15 C -0.105 4.105 16 C -0.174 4.174 17 C 0.103 3.897 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.237 4.237 27 C -0.125 4.125 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.223 0.777 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.127 6.477 -19.478 22.077 hybrid contribution 0.437 0.504 0.348 0.753 sum -7.690 6.981 -19.130 21.768 Atomic orbital electron populations 1.21855 0.91233 1.03033 1.03501 1.22076 0.98109 0.96981 0.93588 1.21856 1.01170 0.93481 1.03686 1.24239 0.88167 0.93193 0.95755 1.87317 1.42811 1.67090 1.29905 1.23873 0.77559 0.87131 0.81297 1.90770 1.48302 1.25472 1.64875 1.21988 0.94117 0.89930 0.92971 0.85383 1.45099 1.53280 1.30996 1.10403 1.16073 0.80378 0.83926 0.80493 1.90968 1.54232 1.27568 1.70791 1.42001 1.46547 1.33165 1.08993 1.16963 1.17661 0.93870 0.80008 1.20590 0.99324 0.94190 0.96369 1.20986 1.04960 0.99783 0.91710 1.17666 0.87809 0.90702 0.93482 1.19501 1.36514 1.00343 0.92601 0.90473 1.25924 0.92682 0.95979 0.99776 1.69847 1.24054 1.11122 1.36584 0.86363 0.79707 0.78301 0.82307 1.18834 1.20360 1.19060 1.20510 1.13111 0.96445 0.93609 1.19986 1.03919 0.95133 0.93414 0.90988 0.91155 0.91658 0.91694 0.90929 0.90727 0.86893 0.89373 0.76238 0.77704 0.87420 0.86316 0.90772 0.88664 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.32 37.16 0.31 -0.38 16 2 C -0.11 -0.68 1.09 -153.02 -0.17 -0.85 16 3 C -0.14 -0.67 7.11 37.16 0.26 -0.41 16 4 C 0.06 0.37 7.04 37.87 0.27 0.64 16 5 O -0.35 -4.09 11.17 -39.73 -0.44 -4.53 16 6 C 0.47 6.80 8.13 36.40 0.30 7.10 16 7 O -0.42 -8.18 18.00 -18.32 -0.33 -8.51 16 8 C 0.12 1.38 2.97 -67.92 -0.20 1.18 16 9 H 0.13 1.68 7.25 -51.92 -0.38 1.30 16 10 N -0.74 -9.26 4.67 -58.66 -0.27 -9.54 16 11 C 0.69 12.63 8.38 -86.91 -0.73 11.90 16 12 O -0.56 -12.99 13.50 5.29 0.07 -12.92 16 13 N -0.66 -11.89 5.31 -14.10 -0.07 -11.97 16 14 C 0.01 0.17 6.30 -83.57 -0.53 -0.36 16 15 C -0.08 -2.21 8.61 -39.79 -0.34 -2.55 16 16 C -0.15 -4.28 8.62 -39.26 -0.34 -4.62 16 17 C 0.11 2.90 5.57 -106.80 -0.59 2.31 16 18 C -0.46 -12.44 9.04 -37.86 -0.34 -12.78 16 19 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 20 C 0.07 1.92 5.14 -17.34 -0.09 1.83 16 21 N -0.79 -21.19 10.97 55.54 0.61 -20.58 16 22 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 27 C -0.10 -2.30 9.90 -39.80 -0.39 -2.70 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 7.04 -51.93 -0.37 -0.07 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 34 H 0.11 0.40 7.82 -51.93 -0.41 -0.01 16 35 H 0.09 0.40 7.78 -51.93 -0.40 -0.01 16 36 H 0.40 3.62 5.86 -40.82 -0.24 3.38 16 37 H 0.39 5.35 8.83 -40.82 -0.36 4.99 16 38 H 0.11 2.91 6.26 -52.49 -0.33 2.59 16 39 H 0.12 3.43 6.20 -52.49 -0.33 3.10 16 40 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -35.28 350.08 -8.46 -43.73 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.29 Total: 10.28 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.97 Total: -5.38 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.26 Total: -42.08 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.70 Total: -25.96 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.28 -8.46 -43.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.416 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds