Wall clock time and date at job start Tue Mar 31 2020 13:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.76229 * 2 1 4 4 C 1.54369 * 110.70431 * 236.81555 * 2 1 3 5 5 O 1.45952 * 105.06635 * 223.79248 * 4 2 1 6 6 C 1.34560 * 108.40456 * 32.43837 * 5 4 2 7 7 O 1.20827 * 125.94259 * 146.64025 * 6 5 4 8 8 C 1.51506 * 108.10889 * 326.66352 * 6 5 4 9 9 H 1.09008 * 110.40149 * 139.28797 * 8 6 5 10 10 N 1.46500 * 110.40301 * 261.59380 * 8 6 5 11 11 C 1.34775 * 119.99752 * 273.54417 * 10 8 6 12 12 O 1.21581 * 120.00535 * 0.02562 * 11 10 8 13 13 N 1.34786 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00018 * 175.50729 * 13 11 10 15 15 C 1.39484 * 119.83246 * 35.89436 * 14 13 11 16 16 C 1.36366 * 120.17014 * 179.97438 * 15 14 13 17 17 C 1.40872 * 119.82680 * 0.02562 * 16 15 14 18 18 C 1.41155 * 120.16438 * 179.97438 * 17 16 15 19 19 H 1.08009 * 120.00037 * 205.47256 * 18 17 16 20 20 C 1.39890 * 120.00197 * 25.47296 * 18 17 16 21 21 N 1.30888 * 119.99577 * 17.01761 * 20 18 17 22 22 Si 1.86802 * 120.00228 * 197.01498 * 20 18 17 23 23 H 1.48496 * 109.46771 * 60.00289 * 22 20 18 24 24 H 1.48498 * 109.46795 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46964 * 299.99913 * 22 20 18 26 26 C 1.40875 * 119.67125 * 359.97438 * 17 16 15 27 27 C 1.36369 * 119.82669 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47472 * 296.81339 * 1 2 3 29 29 H 1.09001 * 109.46538 * 56.81322 * 1 2 3 30 30 H 1.09002 * 109.47015 * 176.80895 * 1 2 3 31 31 H 1.08996 * 109.47274 * 183.18691 * 3 2 1 32 32 H 1.08998 * 109.47060 * 303.19052 * 3 2 1 33 33 H 1.09003 * 109.46697 * 63.18397 * 3 2 1 34 34 H 1.08990 * 110.32596 * 104.89200 * 4 2 1 35 35 H 1.09007 * 110.40665 * 342.73039 * 4 2 1 36 36 H 0.97001 * 120.00009 * 93.54816 * 10 8 6 37 37 H 0.97001 * 119.99575 * 355.50711 * 13 11 10 38 38 H 1.08001 * 119.91388 * 359.97438 * 15 14 13 39 39 H 1.07999 * 120.09278 * 179.74477 * 16 15 14 40 40 H 0.97001 * 119.99897 * 180.02562 * 21 20 18 41 41 H 1.08003 * 120.08101 * 179.97438 * 26 17 16 42 42 H 1.08000 * 119.91140 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0758 -0.7903 -1.2085 5 8 3.1615 -1.6040 -0.6706 6 6 2.8555 -1.9367 0.5968 7 8 3.1506 -2.9696 1.1499 8 6 2.0761 -0.7909 1.2093 9 1 1.2560 -1.1718 1.8182 10 7 2.9598 0.0546 2.0157 11 6 3.1947 -0.2544 3.3063 12 8 2.6736 -1.2350 3.8013 13 7 4.0074 0.5237 4.0484 14 6 4.1766 0.2593 5.4050 15 6 4.1936 -1.0599 5.8580 16 6 4.3593 -1.3268 7.1850 17 6 4.5130 -0.2660 8.0991 18 6 4.6845 -0.5341 9.4743 19 1 4.3984 0.2048 10.2084 20 6 5.2250 -1.7568 9.8866 21 7 5.8724 -2.5075 9.0318 22 14 5.0230 -2.3179 11.6568 23 1 3.5777 -2.4389 11.9757 24 1 5.6810 -3.6371 11.8360 25 1 5.6491 -1.3243 12.5655 26 6 4.4948 1.0636 7.6340 27 6 4.3282 1.3147 6.3041 28 1 -0.3634 0.4635 0.9171 29 1 -0.3632 0.5625 -0.8601 30 1 -0.3633 -1.0261 -0.0572 31 1 3.1606 1.4067 -0.0571 32 1 1.6751 1.9698 -0.8600 33 1 1.7676 1.9347 0.9172 34 1 2.4553 -0.1067 -1.9678 35 1 1.2975 -1.4276 -1.6287 36 1 3.3759 0.8368 1.6207 37 1 4.4744 1.2680 3.6374 38 1 4.0751 -1.8720 5.1559 39 1 4.3681 -2.3485 7.5348 40 1 6.2468 -3.3554 9.3176 41 1 4.6117 1.8819 8.3292 42 1 4.3144 2.3335 5.9460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878086294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:08 Heat of formation + Delta-G solvation = -99.508350 kcal Electronic energy + Delta-G solvation = -26434.707693 eV Core-core repulsion = 22572.213962 eV Total energy + Delta-G solvation = -3862.493731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.67265 -41.20010 -39.25488 -39.00369 -37.03582 -36.17392 -34.93662 -34.27689 -31.40908 -30.88888 -29.11724 -28.23666 -27.56615 -26.58362 -23.57635 -23.08687 -22.29288 -21.66578 -20.97833 -19.55435 -19.23419 -18.75029 -18.12575 -17.79709 -17.42841 -17.04386 -16.33959 -16.11506 -15.73554 -15.64869 -15.27702 -14.88689 -14.84129 -14.60299 -14.50242 -13.96714 -13.85177 -13.65731 -13.31513 -13.24061 -13.01037 -12.91861 -12.76829 -12.53792 -12.42421 -12.28796 -12.11996 -11.81589 -11.65178 -11.55847 -11.52697 -11.25394 -10.96865 -10.70627 -10.21137 -9.44623 -8.85813 -8.58988 -6.27029 0.54929 0.87861 1.15548 1.37392 1.48262 1.51228 1.63583 1.99670 2.20799 2.30426 2.75916 2.89324 3.02335 3.26621 3.55553 3.70401 3.75164 4.12188 4.20876 4.45018 4.48652 4.53407 4.55998 4.80843 4.87197 4.90560 4.97106 5.02224 5.09035 5.16380 5.20130 5.29392 5.30958 5.34124 5.42452 5.52547 5.65596 5.75567 6.07071 6.11174 6.12320 6.22421 6.35464 6.69210 6.93092 7.02180 7.03987 7.56985 8.34167 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002767 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.232424 B =10115.214101 C =10670.771615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.466 3.534 7 O -0.485 6.485 8 C 0.114 3.886 9 H 0.108 0.892 10 N -0.709 5.709 11 C 0.687 3.313 12 O -0.614 6.614 13 N -0.651 5.651 14 C 0.022 3.978 15 C -0.102 4.102 16 C -0.181 4.181 17 C 0.074 3.926 18 C -0.495 4.495 19 H 0.083 0.917 20 C 0.029 3.971 21 N -0.829 5.829 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.221 4.221 27 C -0.093 4.093 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.108 0.892 36 H 0.421 0.579 37 H 0.416 0.584 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.286 0.714 41 H 0.114 0.886 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 11.617 -22.164 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.204 4.204 4 C -0.019 4.019 5 O -0.280 6.280 6 C 0.305 3.695 7 O -0.367 6.367 8 C 0.005 3.995 9 H 0.126 0.874 10 N -0.372 5.372 11 C 0.388 3.612 12 O -0.492 6.492 13 N -0.299 5.299 14 C -0.072 4.072 15 C -0.122 4.122 16 C -0.201 4.201 17 C 0.072 3.928 18 C -0.524 4.524 19 H 0.101 0.899 20 C -0.185 4.185 21 N -0.455 5.455 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.241 4.241 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.126 0.874 36 H 0.263 0.737 37 H 0.253 0.747 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.863 9.990 -21.652 25.439 hybrid contribution 0.612 -0.469 0.718 1.054 sum -8.251 9.521 -20.934 24.433 Atomic orbital electron populations 1.21900 0.89829 1.03358 1.04503 1.22136 0.99020 0.97451 0.90390 1.21940 1.01499 0.91932 1.05061 1.24790 0.87566 0.93577 0.95918 1.87289 1.44490 1.67782 1.28440 1.24364 0.76222 0.86730 0.82214 1.90731 1.51134 1.28232 1.66586 1.22203 0.92813 0.90000 0.94491 0.87407 1.44812 1.52718 1.31344 1.08347 1.16316 0.79913 0.83020 0.81975 1.90955 1.56073 1.29828 1.72373 1.41733 1.46894 1.33934 1.07359 1.16994 1.15102 0.92684 0.82410 1.20553 1.00586 0.95593 0.95494 1.20841 1.07479 0.99016 0.92799 1.17999 0.89011 0.91901 0.93933 1.19804 1.37985 1.01741 0.92868 0.89856 1.26864 0.91660 0.95573 1.04446 1.69935 1.25034 1.11677 1.38902 0.85218 0.79612 0.78163 0.76508 1.18656 1.19618 1.17622 1.20827 1.12343 0.95715 0.95250 1.20363 1.01626 0.97159 0.92197 0.91861 0.87961 0.92082 0.91316 0.87703 0.91090 0.83015 0.87427 0.73674 0.74678 0.89567 0.89064 0.90348 0.86760 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.32 71.98 0.60 -0.34 16 2 C -0.09 -0.86 1.09 -51.22 -0.06 -0.92 16 3 C -0.15 -0.69 7.11 71.98 0.51 -0.18 16 4 C 0.05 0.47 7.04 72.45 0.51 0.98 16 5 O -0.36 -7.89 11.17 -55.06 -0.61 -8.50 16 6 C 0.47 13.90 8.13 71.49 0.58 14.48 16 7 O -0.48 -20.35 18.00 21.55 0.39 -19.97 16 8 C 0.11 2.58 2.97 45.00 0.13 2.71 16 9 H 0.11 2.95 7.25 -2.38 -0.02 2.93 16 10 N -0.71 -16.97 4.67 -457.76 -2.14 -19.11 16 11 C 0.69 25.12 8.38 179.05 1.50 26.62 16 12 O -0.61 -29.78 13.50 -3.97 -0.05 -29.83 16 13 N -0.65 -22.50 5.31 -316.78 -1.68 -24.18 16 14 C 0.02 1.00 6.30 38.56 0.24 1.24 16 15 C -0.10 -5.58 8.61 22.13 0.19 -5.39 16 16 C -0.18 -10.67 8.62 22.48 0.19 -10.47 16 17 C 0.07 4.19 5.57 -21.27 -0.12 4.07 16 18 C -0.49 -27.55 9.04 23.39 0.21 -27.34 16 19 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 20 C 0.03 1.53 5.14 85.23 0.44 1.97 16 21 N -0.83 -46.65 10.97 21.82 0.24 -46.41 16 22 Si 0.98 40.11 29.59 68.60 2.03 42.14 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 26 C -0.22 -10.72 9.74 22.48 0.22 -10.50 16 27 C -0.09 -3.93 9.90 22.13 0.22 -3.71 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.06 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.07 0.30 7.04 -2.39 -0.02 0.29 16 32 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.07 0.44 7.74 -2.39 -0.02 0.43 16 34 H 0.15 0.21 7.82 -2.39 -0.02 0.19 16 35 H 0.11 0.57 7.78 -2.38 -0.02 0.55 16 36 H 0.42 6.39 5.86 -92.71 -0.54 5.85 16 37 H 0.42 10.06 8.83 -92.71 -0.82 9.24 16 38 H 0.09 5.03 6.26 -2.91 -0.02 5.01 16 39 H 0.09 5.74 6.20 -2.91 -0.02 5.72 16 40 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 41 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -85.63 350.08 3.26 -82.36 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.28 Total: 30.27 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.38 Total: -6.77 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -3.58 Total: -89.70 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.28 Total: -58.30 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -85.63 3.26 -82.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.147 kcal (2) G-P(sol) polarization free energy of solvation -85.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds