Wall clock time and date at job start Tue Mar 31 2020 13:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.76534 * 2 1 4 4 C 1.54374 * 110.69952 * 123.18553 * 2 1 3 5 5 O 1.45948 * 105.06452 * 136.20375 * 4 2 1 6 6 C 1.34562 * 108.40532 * 327.56049 * 5 4 2 7 7 O 1.20833 * 125.93994 * 213.37719 * 6 5 4 8 8 C 1.51499 * 108.11120 * 33.34045 * 6 5 4 9 9 H 1.09005 * 110.40197 * 220.83354 * 8 6 5 10 10 N 1.46494 * 110.41133 * 98.40451 * 8 6 5 11 11 C 1.34772 * 120.00123 * 89.78790 * 10 8 6 12 12 O 1.21583 * 120.00264 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00030 * 180.02562 * 11 10 8 14 14 C 1.39244 * 119.99962 * 175.71475 * 13 11 10 15 15 C 1.39481 * 119.82982 * 215.02153 * 14 13 11 16 16 C 1.36377 * 120.16530 * 179.75625 * 15 14 13 17 17 C 1.40863 * 119.82831 * 0.54320 * 16 15 14 18 18 C 1.41160 * 120.16534 * 179.74100 * 17 16 15 19 19 H 1.07999 * 119.99802 * 214.76455 * 18 17 16 20 20 C 1.39894 * 120.00193 * 34.75566 * 18 17 16 21 21 N 1.30886 * 119.99515 * 355.56179 * 20 18 17 22 22 Si 1.86796 * 120.00214 * 175.56245 * 20 18 17 23 23 H 1.48500 * 109.46850 * 60.00237 * 22 20 18 24 24 H 1.48504 * 109.47261 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47159 * 299.99904 * 22 20 18 26 26 C 1.40868 * 119.67332 * 359.71222 * 17 16 15 27 27 C 1.36369 * 119.82762 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46911 * 298.27201 * 1 2 3 29 29 H 1.09001 * 109.46876 * 58.26936 * 1 2 3 30 30 H 1.08998 * 109.47355 * 178.26921 * 1 2 3 31 31 H 1.08993 * 109.47116 * 181.73426 * 3 2 1 32 32 H 1.09001 * 109.46896 * 301.73802 * 3 2 1 33 33 H 1.09001 * 109.46974 * 61.72684 * 3 2 1 34 34 H 1.08995 * 110.32363 * 255.10463 * 4 2 1 35 35 H 1.09004 * 110.31740 * 17.21330 * 4 2 1 36 36 H 0.97002 * 119.99834 * 269.79351 * 10 8 6 37 37 H 0.97002 * 120.00126 * 355.71344 * 13 11 10 38 38 H 1.07999 * 119.91803 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.08271 * 180.22890 * 16 15 14 40 40 H 0.97001 * 119.99454 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.08761 * 180.02562 * 26 17 16 42 42 H 1.07999 * 119.91918 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0725 1.4306 0.0000 4 6 2.0757 -0.7904 1.2086 5 8 3.1614 -1.6041 0.6707 6 6 2.8553 -1.9368 -0.5967 7 8 3.1501 -2.9699 -1.1497 8 6 2.0761 -0.7910 -1.2093 9 1 1.2548 -1.1718 -1.8165 10 7 2.9598 0.0544 -2.0157 11 6 3.1419 -0.2156 -3.3235 12 8 2.5722 -1.1606 -3.8342 13 7 3.9553 0.5620 -4.0653 14 6 4.2138 0.2317 -5.3930 15 6 5.4727 0.4833 -5.9382 16 6 5.7348 0.1580 -7.2364 17 6 4.7267 -0.4229 -8.0304 18 6 4.9885 -0.7574 -9.3766 19 1 4.2096 -0.6606 -10.1184 20 6 6.2570 -1.2141 -9.7499 21 7 7.2251 -1.2490 -8.8697 22 14 6.5692 -1.7741 -11.5044 23 1 6.3038 -0.6497 -12.4374 24 1 7.9830 -2.2074 -11.6416 25 1 5.6692 -2.9098 -11.8290 26 6 3.4561 -0.6691 -7.4742 27 6 3.2105 -0.3433 -6.1730 28 1 -0.3633 0.4868 0.9051 29 1 -0.3633 0.5405 -0.8741 30 1 -0.3634 -1.0272 -0.0310 31 1 3.1617 1.4061 -0.0311 32 1 1.6958 1.9620 -0.8740 33 1 1.7461 1.9429 0.9051 34 1 2.4553 -0.1068 1.9679 35 1 1.2961 -1.4263 1.6281 36 1 3.4141 0.8085 -1.6083 37 1 4.3608 1.3516 -3.6742 38 1 6.2432 0.9329 -5.3295 39 1 6.7112 0.3501 -7.6561 40 1 8.1048 -1.5653 -9.1287 41 1 2.6783 -1.1146 -8.0768 42 1 2.2371 -0.5318 -5.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878086295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:15 Heat of formation + Delta-G solvation = -73.950418 kcal Electronic energy + Delta-G solvation = -26381.150636 eV Core-core repulsion = 22519.765180 eV Total energy + Delta-G solvation = -3861.385456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71924 -39.74168 -37.91735 -37.44190 -36.03250 -34.40478 -33.58912 -32.72412 -29.56821 -29.00647 -28.32297 -27.42038 -27.04683 -24.76430 -22.12095 -21.31935 -20.77846 -20.43061 -20.04316 -18.26993 -17.50499 -17.25560 -17.11168 -16.73646 -16.04259 -15.17765 -15.03877 -14.95924 -14.59830 -14.25295 -14.17878 -13.89796 -13.83269 -13.14970 -12.99416 -12.67435 -12.60452 -12.55681 -12.09135 -11.87697 -11.76657 -11.65892 -11.49305 -11.31527 -11.11979 -11.02964 -10.87641 -10.74958 -10.64175 -10.10288 -9.54384 -9.44315 -9.23131 -9.01210 -8.86364 -7.49752 -6.80810 -6.56637 -4.29277 1.67150 2.65811 2.77737 3.11926 3.12706 3.14312 3.16107 3.26787 3.53966 3.59134 3.91712 4.02235 4.10085 4.14571 4.53068 4.62080 4.75419 4.86297 4.92671 5.10292 5.12364 5.24668 5.29750 5.43554 5.61957 5.68044 5.69979 6.22195 6.26131 6.38313 6.47974 6.75259 6.78289 7.06899 7.16765 7.27886 7.31668 7.41009 7.69229 7.87137 7.98567 8.12799 8.34347 8.41976 8.68160 8.91505 8.97877 9.07695 10.34614 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.002637 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.203932 B =10617.352825 C =10807.753853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.467 3.533 7 O -0.418 6.418 8 C 0.118 3.882 9 H 0.130 0.870 10 N -0.734 5.734 11 C 0.692 3.308 12 O -0.563 6.563 13 N -0.662 5.662 14 C 0.020 3.980 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.813 5.813 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.204 4.204 27 C -0.085 4.085 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.392 0.608 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.278 0.722 41 H 0.096 0.904 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 8.046 20.070 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.014 4.014 5 O -0.271 6.271 6 C 0.302 3.698 7 O -0.295 6.295 8 C 0.009 3.991 9 H 0.148 0.852 10 N -0.397 5.397 11 C 0.393 3.607 12 O -0.438 6.438 13 N -0.308 5.308 14 C -0.072 4.072 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.097 3.903 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.146 4.146 21 N -0.440 5.440 22 Si 0.741 3.259 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.105 4.105 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.225 0.775 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.353 6.499 19.442 22.532 hybrid contribution 0.701 0.352 -0.264 0.828 sum -8.651 6.851 19.178 22.127 Atomic orbital electron populations 1.21849 0.91239 1.03103 1.03397 1.22099 0.98110 0.97009 0.93646 1.21842 1.01081 0.93450 1.03602 1.24239 0.88165 0.93199 0.95771 1.87319 1.42786 1.67094 1.29872 1.23862 0.77517 0.87121 0.81316 1.90773 1.48317 1.25511 1.64913 1.21990 0.94167 0.89905 0.93028 0.85190 1.45083 1.52214 1.33877 1.08501 1.16061 0.81323 0.82840 0.80506 1.90956 1.51369 1.30667 1.70791 1.42045 1.49696 1.27592 1.11447 1.17063 0.94946 1.13630 0.81584 1.20285 0.93045 1.04024 0.96859 1.21171 1.01205 1.00819 0.92877 1.17713 0.90766 0.88305 0.93556 1.19451 0.96449 1.39147 0.94238 0.90689 1.25872 0.95461 0.94135 0.99085 1.69762 1.02556 1.36795 1.34903 0.86252 0.77812 0.79801 0.82068 1.19101 1.20476 1.19118 1.20800 0.98800 1.08265 0.94541 1.20407 0.97310 0.99388 0.93413 0.91170 0.91013 0.91653 0.91785 0.90781 0.90980 0.86870 0.89362 0.76187 0.77517 0.89159 0.85023 0.91137 0.88610 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.29 37.16 0.31 -0.35 16 2 C -0.11 -0.67 1.09 -153.01 -0.17 -0.84 16 3 C -0.14 -0.65 7.19 37.16 0.27 -0.38 16 4 C 0.06 0.37 7.04 37.88 0.27 0.63 16 5 O -0.35 -4.06 11.17 -39.73 -0.44 -4.50 16 6 C 0.47 6.78 8.14 36.40 0.30 7.08 16 7 O -0.42 -8.21 18.00 -18.32 -0.33 -8.54 16 8 C 0.12 1.35 3.02 -67.92 -0.21 1.15 16 9 H 0.13 1.67 7.15 -51.93 -0.37 1.30 16 10 N -0.73 -9.13 4.67 -58.66 -0.27 -9.40 16 11 C 0.69 12.46 8.39 -86.92 -0.73 11.73 16 12 O -0.56 -12.80 13.41 5.29 0.07 -12.73 16 13 N -0.66 -11.75 5.31 -14.10 -0.07 -11.83 16 14 C 0.02 0.46 6.31 -83.57 -0.53 -0.07 16 15 C -0.12 -2.83 9.90 -39.79 -0.39 -3.22 16 16 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16 17 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 18 C -0.46 -12.57 9.02 -37.85 -0.34 -12.91 16 19 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 21 N -0.81 -21.66 10.59 55.55 0.59 -21.07 16 22 Si 0.92 19.44 29.56 -169.99 -5.03 14.42 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.20 -5.29 9.74 -39.26 -0.38 -5.68 16 27 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 6.69 -51.93 -0.35 -0.05 16 32 H 0.07 0.37 8.03 -51.93 -0.42 -0.05 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.11 0.39 7.82 -51.93 -0.41 -0.02 16 35 H 0.09 0.39 7.81 -51.93 -0.41 -0.02 16 36 H 0.40 3.59 5.90 -40.82 -0.24 3.34 16 37 H 0.39 5.27 8.83 -40.82 -0.36 4.91 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 3.55 6.13 -52.49 -0.32 3.23 16 40 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 41 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -35.45 349.76 -8.47 -43.92 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.28 Total: 9.95 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.98 Total: -5.49 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.24 Total: -42.30 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.70 Total: -25.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.45 -8.47 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.027 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds