Wall clock time and date at job start Tue Mar 31 2020 13:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.76534 * 2 1 4 4 C 1.54374 * 110.69952 * 123.18553 * 2 1 3 5 5 O 1.45948 * 105.06452 * 136.20375 * 4 2 1 6 6 C 1.34562 * 108.40532 * 327.56049 * 5 4 2 7 7 O 1.20833 * 125.93994 * 213.37719 * 6 5 4 8 8 C 1.51499 * 108.11120 * 33.34045 * 6 5 4 9 9 H 1.09005 * 110.40197 * 220.83354 * 8 6 5 10 10 N 1.46494 * 110.41133 * 98.40451 * 8 6 5 11 11 C 1.34772 * 120.00123 * 89.78790 * 10 8 6 12 12 O 1.21583 * 120.00264 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00030 * 180.02562 * 11 10 8 14 14 C 1.39244 * 119.99962 * 175.71475 * 13 11 10 15 15 C 1.39481 * 119.82982 * 215.02153 * 14 13 11 16 16 C 1.36377 * 120.16530 * 179.75625 * 15 14 13 17 17 C 1.40863 * 119.82831 * 0.54320 * 16 15 14 18 18 C 1.41160 * 120.16534 * 179.74100 * 17 16 15 19 19 H 1.07999 * 119.99802 * 214.76455 * 18 17 16 20 20 C 1.39894 * 120.00193 * 34.75566 * 18 17 16 21 21 N 1.30886 * 119.99515 * 355.56179 * 20 18 17 22 22 Si 1.86796 * 120.00214 * 175.56245 * 20 18 17 23 23 H 1.48500 * 109.46850 * 60.00237 * 22 20 18 24 24 H 1.48504 * 109.47261 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47159 * 299.99904 * 22 20 18 26 26 C 1.40868 * 119.67332 * 359.71222 * 17 16 15 27 27 C 1.36369 * 119.82762 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46911 * 298.27201 * 1 2 3 29 29 H 1.09001 * 109.46876 * 58.26936 * 1 2 3 30 30 H 1.08998 * 109.47355 * 178.26921 * 1 2 3 31 31 H 1.08993 * 109.47116 * 181.73426 * 3 2 1 32 32 H 1.09001 * 109.46896 * 301.73802 * 3 2 1 33 33 H 1.09001 * 109.46974 * 61.72684 * 3 2 1 34 34 H 1.08995 * 110.32363 * 255.10463 * 4 2 1 35 35 H 1.09004 * 110.31740 * 17.21330 * 4 2 1 36 36 H 0.97002 * 119.99834 * 269.79351 * 10 8 6 37 37 H 0.97002 * 120.00126 * 355.71344 * 13 11 10 38 38 H 1.07999 * 119.91803 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.08271 * 180.22890 * 16 15 14 40 40 H 0.97001 * 119.99454 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.08761 * 180.02562 * 26 17 16 42 42 H 1.07999 * 119.91918 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0725 1.4306 0.0000 4 6 2.0757 -0.7904 1.2086 5 8 3.1614 -1.6041 0.6707 6 6 2.8553 -1.9368 -0.5967 7 8 3.1501 -2.9699 -1.1497 8 6 2.0761 -0.7910 -1.2093 9 1 1.2548 -1.1718 -1.8165 10 7 2.9598 0.0544 -2.0157 11 6 3.1419 -0.2156 -3.3235 12 8 2.5722 -1.1606 -3.8342 13 7 3.9553 0.5620 -4.0653 14 6 4.2138 0.2317 -5.3930 15 6 5.4727 0.4833 -5.9382 16 6 5.7348 0.1580 -7.2364 17 6 4.7267 -0.4229 -8.0304 18 6 4.9885 -0.7574 -9.3766 19 1 4.2096 -0.6606 -10.1184 20 6 6.2570 -1.2141 -9.7499 21 7 7.2251 -1.2490 -8.8697 22 14 6.5692 -1.7741 -11.5044 23 1 6.3038 -0.6497 -12.4374 24 1 7.9830 -2.2074 -11.6416 25 1 5.6692 -2.9098 -11.8290 26 6 3.4561 -0.6691 -7.4742 27 6 3.2105 -0.3433 -6.1730 28 1 -0.3633 0.4868 0.9051 29 1 -0.3633 0.5405 -0.8741 30 1 -0.3634 -1.0272 -0.0310 31 1 3.1617 1.4061 -0.0311 32 1 1.6958 1.9620 -0.8740 33 1 1.7461 1.9429 0.9051 34 1 2.4553 -0.1068 1.9679 35 1 1.2961 -1.4263 1.6281 36 1 3.4141 0.8085 -1.6083 37 1 4.3608 1.3516 -3.6742 38 1 6.2432 0.9329 -5.3295 39 1 6.7112 0.3501 -7.6561 40 1 8.1048 -1.5653 -9.1287 41 1 2.6783 -1.1146 -8.0768 42 1 2.2371 -0.5318 -5.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878086295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:14 Heat of formation + Delta-G solvation = -98.011155 kcal Electronic energy + Delta-G solvation = -26382.193988 eV Core-core repulsion = 22519.765180 eV Total energy + Delta-G solvation = -3862.428808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.67600 -41.23437 -39.27443 -39.00442 -37.03724 -36.14646 -34.94239 -34.25538 -31.49433 -30.79051 -29.11627 -28.23761 -27.56353 -26.58591 -23.68441 -22.94890 -22.28797 -21.72356 -20.98145 -19.65013 -19.17767 -18.75608 -18.08596 -17.80714 -17.47020 -16.95875 -16.35171 -16.19736 -15.76453 -15.61129 -15.25339 -14.92266 -14.84125 -14.59293 -14.49563 -14.01206 -13.83098 -13.60450 -13.29853 -13.23139 -13.02231 -12.91153 -12.77593 -12.52202 -12.47287 -12.29521 -12.12047 -11.85727 -11.68709 -11.52667 -11.41113 -11.28110 -11.07252 -10.69491 -10.20902 -9.46493 -8.71410 -8.49808 -6.32476 0.55211 0.83555 1.14615 1.39161 1.48224 1.51642 1.60103 2.02645 2.24546 2.28026 2.80207 2.88945 3.03239 3.23632 3.56079 3.68374 3.70162 4.12092 4.20550 4.38802 4.51195 4.54314 4.56764 4.81895 4.85412 4.91235 4.91920 5.02462 5.11262 5.13473 5.19898 5.30352 5.31058 5.34230 5.42798 5.52923 5.67726 5.76789 6.00079 6.07756 6.18135 6.22941 6.39638 6.68345 6.97013 6.99587 7.02493 7.53014 8.42946 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.002637 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.203932 B =10617.352825 C =10807.753853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.467 3.533 7 O -0.486 6.486 8 C 0.113 3.887 9 H 0.112 0.888 10 N -0.709 5.709 11 C 0.690 3.310 12 O -0.613 6.613 13 N -0.652 5.652 14 C 0.037 3.963 15 C -0.119 4.119 16 C -0.158 4.158 17 C 0.067 3.933 18 C -0.499 4.499 19 H 0.073 0.927 20 C 0.026 3.974 21 N -0.843 5.843 22 Si 0.989 3.011 23 H -0.256 1.256 24 H -0.268 1.268 25 H -0.267 1.267 26 C -0.220 4.220 27 C -0.097 4.097 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.108 0.892 36 H 0.420 0.580 37 H 0.416 0.584 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.284 0.716 41 H 0.095 0.905 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 10.007 22.607 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.019 4.019 5 O -0.280 6.280 6 C 0.306 3.694 7 O -0.368 6.368 8 C 0.004 3.996 9 H 0.130 0.870 10 N -0.372 5.372 11 C 0.391 3.609 12 O -0.491 6.491 13 N -0.300 5.300 14 C -0.057 4.057 15 C -0.139 4.139 16 C -0.178 4.178 17 C 0.064 3.936 18 C -0.529 4.529 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.471 5.471 22 Si 0.810 3.190 23 H -0.180 1.180 24 H -0.193 1.193 25 H -0.191 1.191 26 C -0.240 4.240 27 C -0.117 4.117 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.126 0.874 36 H 0.263 0.737 37 H 0.254 0.746 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.607 8.558 22.089 25.563 hybrid contribution 0.686 -0.188 -0.783 1.058 sum -8.921 8.370 21.306 24.568 Atomic orbital electron populations 1.21894 0.89816 1.03180 1.04670 1.22151 0.99035 0.97413 0.90505 1.21926 1.01154 0.91961 1.05190 1.24788 0.87571 0.93577 0.95932 1.87290 1.44459 1.67775 1.28447 1.24352 0.76164 0.86711 0.82220 1.90732 1.51168 1.28254 1.66623 1.22209 0.92901 0.89920 0.94536 0.87017 1.44814 1.51798 1.34082 1.06498 1.16263 0.80586 0.82094 0.81993 1.90936 1.53150 1.32773 1.72279 1.41781 1.49815 1.28635 1.09808 1.17084 0.94082 1.11172 0.83355 1.20532 0.93975 1.03249 0.96185 1.21165 1.00593 1.01859 0.94220 1.18031 0.91621 0.89491 0.94417 1.19700 0.97575 1.41128 0.94535 0.90861 1.26754 0.94671 0.93580 1.03517 1.69831 1.03064 1.37317 1.36872 0.85149 0.77974 0.79347 0.76545 1.18018 1.19284 1.19129 1.20924 0.98700 1.08976 0.95398 1.20525 0.98021 0.99951 0.93186 0.88041 0.91686 0.92185 0.91587 0.91068 0.87792 0.83062 0.87382 0.73715 0.74619 0.85674 0.86223 0.90520 0.88651 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.29 71.98 0.60 -0.27 16 2 C -0.09 -0.83 1.09 -51.21 -0.06 -0.89 16 3 C -0.15 -0.66 7.19 71.98 0.52 -0.14 16 4 C 0.05 0.44 7.04 72.45 0.51 0.95 16 5 O -0.36 -7.69 11.17 -55.07 -0.61 -8.30 16 6 C 0.47 13.58 8.14 71.49 0.58 14.16 16 7 O -0.49 -20.00 18.00 21.53 0.39 -19.61 16 8 C 0.11 2.48 3.02 45.00 0.14 2.61 16 9 H 0.11 2.93 7.15 -2.38 -0.02 2.91 16 10 N -0.71 -16.50 4.67 -457.78 -2.14 -18.63 16 11 C 0.69 24.44 8.39 179.05 1.50 25.94 16 12 O -0.61 -28.50 13.41 -3.98 -0.05 -28.55 16 13 N -0.65 -22.20 5.31 -316.78 -1.68 -23.88 16 14 C 0.04 1.67 6.31 38.56 0.24 1.91 16 15 C -0.12 -5.48 9.90 22.14 0.22 -5.26 16 16 C -0.16 -8.48 8.61 22.48 0.19 -8.29 16 17 C 0.07 3.80 5.55 -21.28 -0.12 3.68 16 18 C -0.50 -28.16 9.02 23.39 0.21 -27.95 16 19 H 0.07 3.98 7.85 -2.91 -0.02 3.96 16 20 C 0.03 1.39 5.42 85.23 0.46 1.86 16 21 N -0.84 -45.88 10.59 21.82 0.23 -45.65 16 22 Si 0.99 40.32 29.56 68.60 2.03 42.35 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 C -0.22 -11.90 9.74 22.48 0.22 -11.68 16 27 C -0.10 -4.86 8.61 22.13 0.19 -4.66 16 28 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.30 6.69 -2.39 -0.02 0.28 16 32 H 0.07 0.42 8.03 -2.39 -0.02 0.40 16 33 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.15 0.17 7.82 -2.39 -0.02 0.15 16 35 H 0.11 0.52 7.81 -2.39 -0.02 0.50 16 36 H 0.42 6.28 5.90 -92.71 -0.55 5.73 16 37 H 0.42 10.01 8.83 -92.71 -0.82 9.20 16 38 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.12 6.65 6.13 -2.91 -0.02 6.63 16 40 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 42 H 0.11 5.40 6.22 -2.91 -0.02 5.39 16 Total: -1.00 -83.42 349.76 3.28 -80.14 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.29 Total: 30.18 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.41 Total: -8.02 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.59 Total: -88.17 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.28 Total: -56.47 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -83.42 3.28 -80.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -83.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds