Wall clock time and date at job start Tue Mar 31 2020 12:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 120.00493 * 2 1 4 4 H 1.48505 * 109.47352 * 240.00427 * 3 2 1 5 5 H 1.48501 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47648 * 119.99769 * 3 2 1 7 7 C 1.38652 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00630 * 185.03317 * 9 7 2 11 11 C 1.38944 * 120.03746 * 174.68309 * 10 9 7 12 12 C 1.38125 * 120.07302 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13642 * 359.97438 * 12 11 10 14 14 C 1.38922 * 120.06823 * 359.72388 * 13 12 11 15 15 N 1.39941 * 120.03703 * 180.30404 * 14 13 12 16 16 C 1.34767 * 120.00402 * 35.34740 * 15 14 13 17 17 O 1.21592 * 120.00055 * 355.48953 * 16 15 14 18 18 N 1.34779 * 120.00480 * 175.48098 * 16 15 14 19 19 C 1.46569 * 125.29142 * 359.70387 * 18 16 15 20 20 C 1.54288 * 107.07053 * 162.07684 * 19 18 16 21 21 H 1.09000 * 114.07402 * 262.28923 * 20 19 18 22 22 C 1.54295 * 108.00526 * 135.48105 * 20 19 18 23 23 O 1.43675 * 107.49827 * 249.41807 * 22 20 19 24 24 C 1.44414 * 107.03197 * 26.04892 * 23 22 20 25 25 C 1.54596 * 103.42809 * 319.75022 * 24 23 22 26 26 H 1.09004 * 112.79189 * 275.46162 * 25 24 23 27 27 C 1.46552 * 125.30022 * 180.02562 * 18 16 15 28 28 C 1.38740 * 120.03060 * 354.66260 * 10 9 7 29 29 H 0.96995 * 119.99583 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.96716 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.93457 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.96597 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99876 * 215.35256 * 15 14 13 34 34 H 1.09005 * 109.89754 * 281.59166 * 19 18 16 35 35 H 1.08998 * 109.90550 * 42.82246 * 19 18 16 36 36 H 1.09004 * 109.84651 * 129.93362 * 22 20 19 37 37 H 1.08997 * 109.84302 * 8.90356 * 22 20 19 38 38 H 1.09001 * 110.62985 * 201.26027 * 24 23 22 39 39 H 1.09001 * 110.76205 * 78.30114 * 24 23 22 40 40 H 1.08995 * 109.71918 * 301.95445 * 27 18 16 41 41 H 1.08998 * 109.71997 * 62.52081 * 27 18 16 42 42 H 1.07999 * 120.06687 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1050 11 6 1.4355 -4.7352 0.2227 12 6 2.1829 -5.8919 0.3296 13 6 3.5634 -5.8293 0.3194 14 6 4.2037 -4.6027 0.1958 15 7 5.6017 -4.5407 0.1791 16 6 6.3128 -5.5225 -0.4096 17 8 5.7452 -6.5018 -0.8537 18 7 7.6531 -5.4189 -0.5062 19 6 8.4526 -4.2914 -0.0185 20 6 9.9125 -4.7807 0.0804 21 1 10.2109 -5.0900 1.0821 22 6 10.8235 -3.6869 -0.5149 23 8 11.3617 -4.1959 -1.7460 24 6 10.4255 -5.1766 -2.2435 25 6 9.9826 -5.9294 -0.9680 26 1 10.6676 -6.7310 -0.6914 27 6 8.5372 -6.4128 -1.1212 28 6 3.4557 -3.4384 0.0951 29 1 -0.4849 0.8400 0.0004 30 1 0.3568 -4.7875 0.2297 31 1 1.6875 -6.8472 0.4205 32 1 4.1451 -6.7354 0.4028 33 1 6.0588 -3.7911 0.5914 34 1 8.3843 -3.4581 -0.7179 35 1 8.0984 -3.9833 0.9652 36 1 11.6341 -3.4626 0.1785 37 1 10.2414 -2.7863 -0.7099 38 1 10.9157 -5.8566 -2.9402 39 1 9.5730 -4.6909 -2.7184 40 1 8.4156 -7.3732 -0.6203 41 1 8.2941 -6.5170 -2.1787 42 1 3.9511 -2.4831 0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878282686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:46 Heat of formation + Delta-G solvation = -54.209011 kcal Electronic energy + Delta-G solvation = -26217.176127 eV Core-core repulsion = 22356.646722 eV Total energy + Delta-G solvation = -3860.529405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28067 -39.92241 -38.68937 -36.86955 -36.05745 -34.28522 -32.29214 -31.92938 -31.30551 -29.27831 -28.44592 -26.94073 -25.43388 -25.01823 -22.84591 -21.80256 -21.76618 -20.61032 -19.86676 -18.65342 -17.91607 -17.29271 -17.04494 -16.07096 -15.84127 -15.73269 -15.52750 -15.03810 -14.89730 -14.45879 -14.17086 -13.86701 -13.84027 -13.54963 -13.34622 -13.19650 -12.97942 -12.86113 -12.35725 -11.78191 -11.72153 -11.64435 -11.51664 -11.42923 -11.30443 -11.14417 -10.99997 -10.79151 -10.47582 -10.13860 -10.02298 -9.61147 -9.46279 -8.89221 -8.79694 -7.72021 -7.14068 -6.44954 -4.04902 2.04466 2.38459 2.48942 3.10648 3.11047 3.14916 3.22211 3.40991 3.59371 3.92935 3.95873 4.07461 4.30652 4.49907 4.60749 4.62069 4.65878 4.82735 5.08012 5.09524 5.17374 5.24277 5.26098 5.29280 5.36969 5.47432 5.50596 5.63147 5.69109 5.93582 6.02064 6.08737 6.25182 6.32155 6.37054 6.57902 6.81552 7.00347 7.10482 7.22461 7.35032 7.43388 7.83148 7.91100 7.99426 8.55928 9.00257 9.71132 10.73146 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003269 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.732244 B = 8563.228622 C =10354.170623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.393 4.393 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.200 4.200 12 C -0.064 4.064 13 C -0.204 4.204 14 C 0.194 3.806 15 N -0.679 5.679 16 C 0.722 3.278 17 O -0.565 6.565 18 N -0.634 5.634 19 C 0.100 3.900 20 C -0.128 4.128 21 H 0.111 0.889 22 C 0.052 3.948 23 O -0.376 6.376 24 C 0.052 3.948 25 C -0.129 4.129 26 H 0.112 0.888 27 C 0.136 3.864 28 C -0.257 4.257 29 H 0.270 0.730 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.449 -8.399 0.830 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.114 3.886 11 C -0.220 4.220 12 C -0.083 4.083 13 C -0.225 4.225 14 C 0.101 3.899 15 N -0.325 5.325 16 C 0.424 3.576 17 O -0.441 6.441 18 N -0.373 5.373 19 C -0.023 4.023 20 C -0.147 4.147 21 H 0.130 0.870 22 C -0.025 4.025 23 O -0.294 6.294 24 C -0.025 4.025 25 C -0.148 4.148 26 H 0.130 0.870 27 C 0.012 3.988 28 C -0.279 4.279 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.731 -8.836 0.351 22.538 hybrid contribution 0.604 1.282 0.326 1.454 sum 21.334 -7.554 0.677 22.642 Atomic orbital electron populations 1.70025 1.05923 1.27736 1.46087 1.25263 0.95823 0.98742 0.96608 0.85809 0.78739 0.79963 0.79051 1.19584 1.20245 1.19571 1.21217 0.91621 0.80915 1.53181 0.89346 1.84006 1.33909 1.11305 1.78761 1.19042 0.89307 0.88175 0.92027 1.20264 0.99745 0.90275 1.11698 1.20552 0.93093 0.96845 0.97808 1.20709 0.94311 0.96542 1.10914 1.17197 0.79612 0.94258 0.98856 1.42554 1.05592 1.25193 1.59202 1.15357 0.79610 0.83449 0.79150 1.90947 1.68209 1.31341 1.53613 1.47250 1.04280 1.22372 1.63433 1.22238 0.90149 0.89886 1.00068 1.23518 0.94808 0.95544 1.00826 0.87041 1.23320 0.97331 0.95538 0.86292 1.88888 1.44948 1.57704 1.37887 1.23668 0.93276 0.90122 0.95406 1.23464 0.96840 0.98629 0.95903 0.86991 1.21345 0.86630 0.91949 0.98843 1.20775 0.93938 0.97442 1.15762 0.91972 0.86380 0.86609 0.85760 0.76368 0.90990 0.90611 0.89367 0.91513 0.88396 0.91531 0.90980 0.90975 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16 8 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 9 O -0.18 -5.02 9.76 0.06 0.00 -5.02 16 10 C 0.17 4.11 6.65 -39.13 -0.26 3.85 16 11 C -0.20 -4.33 9.99 -39.36 -0.39 -4.73 16 12 C -0.06 -1.23 10.03 -39.64 -0.40 -1.63 16 13 C -0.20 -4.01 8.69 -39.34 -0.34 -4.35 16 14 C 0.19 3.79 6.29 -83.71 -0.53 3.26 16 15 N -0.68 -10.66 5.29 -14.24 -0.08 -10.73 16 16 C 0.72 11.36 8.31 -86.92 -0.72 10.64 16 17 O -0.57 -10.94 14.10 5.29 0.07 -10.87 16 18 N -0.63 -7.20 3.30 -178.41 -0.59 -7.79 16 19 C 0.10 0.80 5.81 -3.33 -0.02 0.78 16 20 C -0.13 -0.79 4.30 -87.84 -0.38 -1.17 16 21 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 22 C 0.05 0.34 7.24 37.84 0.27 0.61 16 23 O -0.38 -3.34 11.51 -35.23 -0.41 -3.75 16 24 C 0.05 0.37 6.87 38.00 0.26 0.63 16 25 C -0.13 -0.84 4.10 -88.26 -0.36 -1.20 16 26 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 27 C 0.14 1.25 6.25 -3.92 -0.02 1.22 16 28 C -0.26 -5.60 9.08 -39.21 -0.36 -5.96 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 31 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.12 2.43 6.24 -52.49 -0.33 2.11 16 33 H 0.40 5.07 7.36 -40.82 -0.30 4.77 16 34 H 0.07 0.57 7.14 -51.93 -0.37 0.20 16 35 H 0.08 0.53 7.43 -51.93 -0.39 0.14 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.42 7.08 -51.93 -0.37 0.05 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.53 7.89 -51.93 -0.41 0.13 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 42 H 0.13 2.73 5.63 -52.49 -0.30 2.43 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -34.22 343.95 -8.35 -42.57 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.23 Total: 7.27 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.05 Total: -7.62 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.09 Total: -42.95 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.33 Total: -19.63 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.22 -8.35 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878282686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.638 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds