Wall clock time and date at job start Tue Mar 31 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 120.00493 * 2 1 4 4 H 1.48505 * 109.47352 * 240.00427 * 3 2 1 5 5 H 1.48501 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47648 * 119.99769 * 3 2 1 7 7 C 1.38652 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00630 * 185.03317 * 9 7 2 11 11 C 1.38944 * 120.03746 * 174.68309 * 10 9 7 12 12 C 1.38125 * 120.07302 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13642 * 359.97438 * 12 11 10 14 14 C 1.38922 * 120.06823 * 359.72388 * 13 12 11 15 15 N 1.39941 * 120.03703 * 180.30404 * 14 13 12 16 16 C 1.34767 * 120.00402 * 35.34740 * 15 14 13 17 17 O 1.21592 * 120.00055 * 355.48953 * 16 15 14 18 18 N 1.34779 * 120.00480 * 175.48098 * 16 15 14 19 19 C 1.46569 * 125.29142 * 359.70387 * 18 16 15 20 20 C 1.54288 * 107.07053 * 162.07684 * 19 18 16 21 21 H 1.09000 * 114.07402 * 262.28923 * 20 19 18 22 22 C 1.54295 * 108.00526 * 135.48105 * 20 19 18 23 23 O 1.43675 * 107.49827 * 249.41807 * 22 20 19 24 24 C 1.44414 * 107.03197 * 26.04892 * 23 22 20 25 25 C 1.54596 * 103.42809 * 319.75022 * 24 23 22 26 26 H 1.09004 * 112.79189 * 275.46162 * 25 24 23 27 27 C 1.46552 * 125.30022 * 180.02562 * 18 16 15 28 28 C 1.38740 * 120.03060 * 354.66260 * 10 9 7 29 29 H 0.96995 * 119.99583 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.96716 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.93457 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.96597 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99876 * 215.35256 * 15 14 13 34 34 H 1.09005 * 109.89754 * 281.59166 * 19 18 16 35 35 H 1.08998 * 109.90550 * 42.82246 * 19 18 16 36 36 H 1.09004 * 109.84651 * 129.93362 * 22 20 19 37 37 H 1.08997 * 109.84302 * 8.90356 * 22 20 19 38 38 H 1.09001 * 110.62985 * 201.26027 * 24 23 22 39 39 H 1.09001 * 110.76205 * 78.30114 * 24 23 22 40 40 H 1.08995 * 109.71918 * 301.95445 * 27 18 16 41 41 H 1.08998 * 109.71997 * 62.52081 * 27 18 16 42 42 H 1.07999 * 120.06687 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1050 11 6 1.4355 -4.7352 0.2227 12 6 2.1829 -5.8919 0.3296 13 6 3.5634 -5.8293 0.3194 14 6 4.2037 -4.6027 0.1958 15 7 5.6017 -4.5407 0.1791 16 6 6.3128 -5.5225 -0.4096 17 8 5.7452 -6.5018 -0.8537 18 7 7.6531 -5.4189 -0.5062 19 6 8.4526 -4.2914 -0.0185 20 6 9.9125 -4.7807 0.0804 21 1 10.2109 -5.0900 1.0821 22 6 10.8235 -3.6869 -0.5149 23 8 11.3617 -4.1959 -1.7460 24 6 10.4255 -5.1766 -2.2435 25 6 9.9826 -5.9294 -0.9680 26 1 10.6676 -6.7310 -0.6914 27 6 8.5372 -6.4128 -1.1212 28 6 3.4557 -3.4384 0.0951 29 1 -0.4849 0.8400 0.0004 30 1 0.3568 -4.7875 0.2297 31 1 1.6875 -6.8472 0.4205 32 1 4.1451 -6.7354 0.4028 33 1 6.0588 -3.7911 0.5914 34 1 8.3843 -3.4581 -0.7179 35 1 8.0984 -3.9833 0.9652 36 1 11.6341 -3.4626 0.1785 37 1 10.2414 -2.7863 -0.7099 38 1 10.9157 -5.8566 -2.9402 39 1 9.5730 -4.6909 -2.7184 40 1 8.4156 -7.3732 -0.6203 41 1 8.2941 -6.5170 -2.1787 42 1 3.9511 -2.4831 0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878282686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:45 Heat of formation + Delta-G solvation = -77.737358 kcal Electronic energy + Delta-G solvation = -26218.196393 eV Core-core repulsion = 22356.646722 eV Total energy + Delta-G solvation = -3861.549670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17623 -41.12006 -40.25230 -38.30146 -37.17658 -35.73119 -34.23838 -32.84122 -31.92108 -30.89622 -30.05010 -27.59604 -27.31002 -26.01160 -23.69428 -23.48957 -22.94159 -21.25796 -21.19946 -19.94789 -19.56414 -18.81614 -17.83987 -17.19944 -17.01136 -16.74514 -16.54203 -16.26233 -16.16890 -15.95772 -15.68048 -15.51105 -15.03733 -14.64304 -14.55977 -14.32249 -13.98887 -13.82971 -13.55791 -13.50772 -13.20829 -12.82168 -12.66388 -12.45381 -12.27873 -12.23011 -12.14317 -11.95790 -11.85378 -11.50091 -11.31026 -11.09369 -10.72435 -10.69604 -9.86065 -9.33462 -8.86298 -8.45654 -6.14755 0.42837 0.70611 1.34736 1.36273 1.46978 1.52614 1.94655 2.18607 2.73403 2.84154 2.88974 3.12939 3.17605 3.49037 3.50089 3.74850 3.93443 4.04359 4.10577 4.15622 4.29763 4.33356 4.43815 4.48213 4.56694 4.60588 4.63859 4.70282 4.71406 4.84459 4.88473 4.94880 5.01625 5.10072 5.11748 5.16323 5.41697 5.47832 5.66827 5.67894 5.84071 5.87860 6.02162 6.19251 6.72076 6.98432 7.32367 7.77978 8.77199 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003269 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.732244 B = 8563.228622 C =10354.170623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.136 3.864 11 C -0.213 4.213 12 C -0.052 4.052 13 C -0.199 4.199 14 C 0.202 3.798 15 N -0.671 5.671 16 C 0.717 3.283 17 O -0.606 6.606 18 N -0.627 5.627 19 C 0.091 3.909 20 C -0.117 4.117 21 H 0.133 0.867 22 C 0.049 3.951 23 O -0.396 6.396 24 C 0.050 3.950 25 C -0.117 4.117 26 H 0.135 0.865 27 C 0.130 3.870 28 C -0.259 4.259 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.785 -8.874 1.532 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.132 6.132 10 C 0.084 3.916 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.220 4.220 14 C 0.106 3.894 15 N -0.319 5.319 16 C 0.420 3.580 17 O -0.485 6.485 18 N -0.364 5.364 19 C -0.031 4.031 20 C -0.136 4.136 21 H 0.151 0.849 22 C -0.028 4.028 23 O -0.315 6.315 24 C -0.027 4.027 25 C -0.136 4.136 26 H 0.153 0.847 27 C 0.008 3.992 28 C -0.281 4.281 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.162 -9.336 1.065 25.925 hybrid contribution -0.287 1.162 0.093 1.200 sum 23.875 -8.174 1.158 25.262 Atomic orbital electron populations 1.70181 1.08082 1.28901 1.48642 1.26591 0.96818 1.02733 0.95771 0.84662 0.77436 0.74238 0.79975 1.18277 1.19833 1.17777 1.21779 0.92544 0.81355 1.53439 0.87956 1.83977 1.35545 1.12444 1.81217 1.19555 0.90593 0.88049 0.93361 1.20494 1.00276 0.90325 1.12201 1.20932 0.92963 0.97480 0.95631 1.20993 0.94674 0.96823 1.09469 1.17198 0.81416 0.93433 0.97304 1.42397 1.04166 1.26016 1.59355 1.15484 0.80889 0.82739 0.78884 1.90909 1.69535 1.32801 1.55245 1.47275 1.03063 1.23698 1.62386 1.22530 0.91028 0.88839 1.00733 1.23540 0.93139 0.95093 1.01796 0.84867 1.23453 0.97986 0.95462 0.85893 1.88877 1.45588 1.58153 1.38910 1.23715 0.92872 0.90117 0.95972 1.23449 0.95147 0.99251 0.95731 0.84722 1.21527 0.87796 0.91671 0.98239 1.20785 0.93209 0.98342 1.15799 0.91822 0.86193 0.82835 0.84964 0.74572 0.90869 0.89142 0.87653 0.91533 0.87091 0.92882 0.90972 0.91744 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.67 21.61 0.30 -55.67 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.66 29.55 68.60 2.03 43.69 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.42 -23.72 9.49 67.92 0.64 -23.08 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.47 9.76 -22.71 -0.22 -13.69 16 10 C 0.14 6.80 6.65 22.56 0.15 6.95 16 11 C -0.21 -9.33 9.99 22.41 0.22 -9.11 16 12 C -0.05 -1.90 10.03 22.23 0.22 -1.68 16 13 C -0.20 -7.51 8.69 22.42 0.19 -7.32 16 14 C 0.20 7.67 6.29 38.13 0.24 7.91 16 15 N -0.67 -20.02 5.29 -317.23 -1.68 -21.70 16 16 C 0.72 21.49 8.31 179.06 1.49 22.98 16 17 O -0.61 -22.78 14.10 -4.00 -0.06 -22.84 16 18 N -0.63 -12.97 3.30 -836.64 -2.77 -15.73 16 19 C 0.09 1.21 5.81 86.80 0.50 1.71 16 20 C -0.12 -1.04 4.30 -8.99 -0.04 -1.08 16 21 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 22 C 0.05 0.49 7.24 72.42 0.52 1.02 16 23 O -0.40 -6.12 11.51 -148.98 -1.72 -7.84 16 24 C 0.05 0.61 6.87 72.53 0.50 1.11 16 25 C -0.12 -1.18 4.10 -9.27 -0.04 -1.22 16 26 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 27 C 0.13 2.14 6.25 86.43 0.54 2.68 16 28 C -0.26 -11.36 9.08 22.51 0.20 -11.16 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.13 4.91 6.24 -2.91 -0.02 4.89 16 33 H 0.42 9.70 7.36 -92.71 -0.68 9.02 16 34 H 0.07 1.00 7.14 -2.38 -0.02 0.98 16 35 H 0.09 0.97 7.43 -2.39 -0.02 0.95 16 36 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 0.67 7.08 -2.39 -0.02 0.65 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.79 7.89 -2.39 -0.02 0.77 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.17 7.76 -2.39 -0.02 1.15 16 42 H 0.13 5.51 5.63 -2.91 -0.02 5.50 16 Total: -1.00 -77.60 343.95 2.10 -75.50 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.39 Total: 29.28 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.83 Total: -11.01 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.15 Total: -93.10 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.99 Total: -44.36 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -77.60 2.10 -75.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878282686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.234 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds