Wall clock time and date at job start Tue Mar 31 2020 13:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.75787 * 2 1 4 4 C 1.54370 * 110.69757 * 236.81737 * 2 1 3 5 5 O 1.45949 * 105.06414 * 223.78796 * 4 2 1 6 6 C 1.34562 * 108.40245 * 32.44507 * 5 4 2 7 7 O 1.20830 * 125.94685 * 146.64331 * 6 5 4 8 8 C 1.51504 * 108.11060 * 326.65866 * 6 5 4 9 9 H 1.09002 * 110.40840 * 139.28559 * 8 6 5 10 10 N 1.46495 * 110.40713 * 261.59737 * 8 6 5 11 11 C 1.34774 * 120.00236 * 273.54350 * 10 8 6 12 12 O 1.21585 * 120.00209 * 0.02562 * 11 10 8 13 13 N 1.34786 * 120.00312 * 179.97438 * 11 10 8 14 14 C 1.39950 * 119.99877 * 175.48749 * 13 11 10 15 15 C 1.39285 * 119.94730 * 215.60963 * 14 13 11 16 16 C 1.38488 * 120.43047 * 180.02562 * 15 14 13 17 17 C 1.37681 * 120.32394 * 0.02562 * 16 15 14 18 18 C 1.40748 * 119.87972 * 359.97438 * 17 16 15 19 19 C 1.41410 * 120.20785 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99543 * 155.32526 * 19 18 17 21 21 C 1.39924 * 120.00181 * 335.05787 * 19 18 17 22 22 N 1.30833 * 119.99953 * 345.01803 * 21 19 18 23 23 Si 1.86803 * 120.00150 * 165.02347 * 21 19 18 24 24 H 1.48503 * 109.47002 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47609 * 119.99701 * 23 21 19 26 26 H 1.48504 * 109.46884 * 239.99740 * 23 21 19 27 27 C 1.38237 * 119.94723 * 35.87124 * 14 13 11 28 28 H 1.09002 * 109.47195 * 296.80976 * 1 2 3 29 29 H 1.08998 * 109.47642 * 56.81008 * 1 2 3 30 30 H 1.09001 * 109.47417 * 176.81016 * 1 2 3 31 31 H 1.08997 * 109.46864 * 183.18882 * 3 2 1 32 32 H 1.09002 * 109.47197 * 303.19006 * 3 2 1 33 33 H 1.08994 * 109.47040 * 63.19207 * 3 2 1 34 34 H 1.08991 * 110.32208 * 104.89359 * 4 2 1 35 35 H 1.08997 * 110.32397 * 342.68439 * 4 2 1 36 36 H 0.97010 * 120.00165 * 93.54571 * 10 8 6 37 37 H 0.97000 * 119.99637 * 355.49465 * 13 11 10 38 38 H 1.08001 * 119.78553 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.83918 * 180.02562 * 16 15 14 40 40 H 1.08003 * 120.06237 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99974 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.16211 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0756 -0.7904 -1.2086 5 8 3.1614 -1.6040 -0.6708 6 6 2.8554 -1.9367 0.5966 7 8 3.1505 -2.9696 1.1497 8 6 2.0760 -0.7910 1.2092 9 1 1.2560 -1.1718 1.8181 10 7 2.9598 0.0545 2.0156 11 6 3.1948 -0.2545 3.3062 12 8 2.6737 -1.2351 3.8012 13 7 4.0083 0.5231 4.0480 14 6 4.1781 0.2576 5.4116 15 6 4.3368 1.3097 6.3104 16 6 4.5061 1.0584 7.6617 17 6 4.5199 -0.2357 8.1317 18 6 4.3607 -1.3090 7.2352 19 6 4.3744 -2.6408 7.7103 20 1 3.8768 -3.4189 7.1505 21 6 5.0373 -2.9515 8.9028 22 7 5.8806 -2.0978 9.4240 23 14 4.7182 -4.5853 9.7504 24 1 3.7293 -5.3660 8.9644 25 1 5.9880 -5.3491 9.8473 26 1 4.1832 -4.3394 11.1138 27 6 4.1936 -1.0488 5.8635 28 1 -0.3634 0.4635 0.9172 29 1 -0.3634 0.5625 -0.8600 30 1 -0.3634 -1.0261 -0.0572 31 1 3.1605 1.4067 -0.0572 32 1 1.6750 1.9698 -0.8600 33 1 1.7676 1.9347 0.9172 34 1 2.4551 -0.1067 -1.9678 35 1 1.2966 -1.4275 -1.6271 36 1 3.3759 0.8367 1.6206 37 1 4.4760 1.2668 3.6367 38 1 4.3286 2.3281 5.9510 39 1 4.6278 1.8814 8.3502 40 1 4.6526 -0.4268 9.1863 41 1 6.3404 -2.3134 10.2505 42 1 4.0753 -1.8654 5.1668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879844815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:20 Heat of formation + Delta-G solvation = -75.087698 kcal Electronic energy + Delta-G solvation = -26605.406618 eV Core-core repulsion = 22743.971846 eV Total energy + Delta-G solvation = -3861.434773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70285 -39.72805 -37.88601 -37.34104 -36.00270 -34.39995 -33.55601 -32.85768 -29.74677 -28.75104 -28.14733 -27.04069 -26.92269 -25.22365 -22.29423 -21.13852 -20.76880 -20.42351 -20.01999 -18.21675 -17.85359 -17.19743 -16.93392 -16.66364 -15.53098 -15.23118 -14.96921 -14.72307 -14.63687 -14.49349 -14.15062 -14.06332 -13.82529 -13.13685 -13.02975 -12.84344 -12.61030 -12.55147 -12.15479 -11.81380 -11.73842 -11.59188 -11.49490 -11.17841 -11.06192 -10.87445 -10.85264 -10.67527 -10.38424 -10.20750 -9.66140 -9.44371 -9.08229 -8.98969 -8.93600 -7.37874 -6.86716 -6.62908 -4.26626 1.69710 2.67755 2.82498 2.99773 3.15134 3.17999 3.23091 3.26324 3.58700 3.61111 3.92449 4.03248 4.11025 4.15526 4.50339 4.62329 4.72181 4.88663 4.93811 5.11353 5.14326 5.26342 5.30816 5.44696 5.62812 5.70591 5.78263 6.25486 6.29289 6.41243 6.44884 6.71808 6.80863 7.10974 7.18862 7.28035 7.34543 7.38366 7.72966 7.86029 8.04698 8.19580 8.29330 8.42257 8.74338 8.91309 9.03883 9.06717 10.28928 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.003226 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.421241 B = 8678.209231 C = 9675.961814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.145 4.145 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.466 3.534 7 O -0.415 6.415 8 C 0.118 3.882 9 H 0.129 0.871 10 N -0.734 5.734 11 C 0.694 3.306 12 O -0.549 6.549 13 N -0.676 5.676 14 C 0.162 3.838 15 C -0.262 4.262 16 C -0.094 4.094 17 C -0.172 4.172 18 C 0.118 3.882 19 C -0.455 4.455 20 H 0.079 0.921 21 C 0.074 3.926 22 N -0.798 5.798 23 Si 0.909 3.091 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.273 1.273 27 C -0.207 4.207 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.278 0.722 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 9.198 -19.536 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.013 4.013 5 O -0.271 6.271 6 C 0.301 3.699 7 O -0.291 6.291 8 C 0.009 3.991 9 H 0.147 0.853 10 N -0.397 5.397 11 C 0.395 3.605 12 O -0.423 6.423 13 N -0.323 5.323 14 C 0.070 3.930 15 C -0.283 4.283 16 C -0.113 4.113 17 C -0.192 4.192 18 C 0.114 3.886 19 C -0.485 4.485 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.424 5.424 23 Si 0.733 3.267 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.228 4.228 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.067 7.701 -18.724 21.794 hybrid contribution 0.425 0.174 0.000 0.460 sum -7.642 7.874 -18.724 21.702 Atomic orbital electron populations 1.21857 0.91208 1.03067 1.03502 1.22079 0.98128 0.96969 0.93582 1.21857 1.01176 0.93489 1.03692 1.24239 0.88180 0.93190 0.95741 1.87321 1.42791 1.67098 1.29888 1.23845 0.77619 0.87151 0.81314 1.90783 1.48133 1.25408 1.64825 1.22007 0.94108 0.89956 0.92991 0.85303 1.45098 1.53234 1.31057 1.10271 1.16024 0.80397 0.83564 0.80548 1.91024 1.53675 1.26981 1.70595 1.42480 1.47236 1.33338 1.09202 1.17232 1.02163 0.94257 0.79300 1.19997 1.19898 0.95050 0.93381 1.20442 1.00766 0.96359 0.93700 1.21411 1.06594 0.90980 1.00243 1.17529 0.87606 0.93562 0.89859 1.19653 1.29354 0.94491 1.04956 0.90303 1.25903 0.92948 0.98805 0.96603 1.69834 1.18854 1.35811 1.17892 0.86252 0.79223 0.81793 0.79414 1.18339 1.20045 1.19774 1.21182 1.11902 0.93838 0.95917 0.90989 0.91144 0.91626 0.91689 0.90898 0.90743 0.86877 0.89357 0.76176 0.77278 0.89430 0.89097 0.86061 0.91101 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.32 37.16 0.31 -0.39 16 2 C -0.11 -0.69 1.09 -153.02 -0.17 -0.86 16 3 C -0.14 -0.68 7.12 37.16 0.26 -0.41 16 4 C 0.06 0.38 7.04 37.88 0.27 0.65 16 5 O -0.35 -4.14 11.17 -39.73 -0.44 -4.58 16 6 C 0.47 6.90 8.13 36.40 0.30 7.19 16 7 O -0.41 -8.27 18.00 -18.32 -0.33 -8.60 16 8 C 0.12 1.39 2.97 -67.92 -0.20 1.19 16 9 H 0.13 1.71 7.25 -51.93 -0.38 1.33 16 10 N -0.73 -9.33 4.67 -58.66 -0.27 -9.60 16 11 C 0.69 12.87 8.39 -86.91 -0.73 12.14 16 12 O -0.55 -13.01 13.52 5.29 0.07 -12.94 16 13 N -0.68 -12.31 5.34 -14.27 -0.08 -12.39 16 14 C 0.16 3.78 6.28 -83.76 -0.53 3.25 16 15 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 16 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 17 C -0.17 -4.64 8.69 -38.84 -0.34 -4.97 16 18 C 0.12 3.34 5.58 -106.85 -0.60 2.75 16 19 C -0.45 -12.99 9.06 -37.74 -0.34 -13.33 16 20 H 0.08 2.25 7.89 -52.49 -0.41 1.84 16 21 C 0.07 1.96 5.20 -17.35 -0.09 1.87 16 22 N -0.80 -21.34 10.82 55.55 0.60 -20.74 16 23 Si 0.91 19.83 29.59 -169.99 -5.03 14.80 16 24 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 C -0.21 -5.61 8.43 -38.69 -0.33 -5.93 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 7.04 -51.93 -0.37 -0.07 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 34 H 0.11 0.40 7.82 -51.93 -0.41 0.00 16 35 H 0.09 0.41 7.77 -51.93 -0.40 0.00 16 36 H 0.40 3.63 5.86 -40.82 -0.24 3.39 16 37 H 0.39 5.42 8.84 -40.82 -0.36 5.06 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.34 6.08 -52.48 -0.32 3.02 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.11 3.25 6.27 -52.49 -0.33 2.92 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -36.07 350.17 -8.45 -44.52 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.28 Total: 9.94 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.97 Total: -5.69 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.25 Total: -42.73 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.70 Total: -26.12 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.07 -8.45 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879844815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.563 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds