Wall clock time and date at job start Tue Mar 31 2020 13:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.75787 * 2 1 4 4 C 1.54370 * 110.69757 * 236.81737 * 2 1 3 5 5 O 1.45949 * 105.06414 * 223.78796 * 4 2 1 6 6 C 1.34562 * 108.40245 * 32.44507 * 5 4 2 7 7 O 1.20830 * 125.94685 * 146.64331 * 6 5 4 8 8 C 1.51504 * 108.11060 * 326.65866 * 6 5 4 9 9 H 1.09002 * 110.40840 * 139.28559 * 8 6 5 10 10 N 1.46495 * 110.40713 * 261.59737 * 8 6 5 11 11 C 1.34774 * 120.00236 * 273.54350 * 10 8 6 12 12 O 1.21585 * 120.00209 * 0.02562 * 11 10 8 13 13 N 1.34786 * 120.00312 * 179.97438 * 11 10 8 14 14 C 1.39950 * 119.99877 * 175.48749 * 13 11 10 15 15 C 1.39285 * 119.94730 * 215.60963 * 14 13 11 16 16 C 1.38488 * 120.43047 * 180.02562 * 15 14 13 17 17 C 1.37681 * 120.32394 * 0.02562 * 16 15 14 18 18 C 1.40748 * 119.87972 * 359.97438 * 17 16 15 19 19 C 1.41410 * 120.20785 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99543 * 155.32526 * 19 18 17 21 21 C 1.39924 * 120.00181 * 335.05787 * 19 18 17 22 22 N 1.30833 * 119.99953 * 345.01803 * 21 19 18 23 23 Si 1.86803 * 120.00150 * 165.02347 * 21 19 18 24 24 H 1.48503 * 109.47002 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47609 * 119.99701 * 23 21 19 26 26 H 1.48504 * 109.46884 * 239.99740 * 23 21 19 27 27 C 1.38237 * 119.94723 * 35.87124 * 14 13 11 28 28 H 1.09002 * 109.47195 * 296.80976 * 1 2 3 29 29 H 1.08998 * 109.47642 * 56.81008 * 1 2 3 30 30 H 1.09001 * 109.47417 * 176.81016 * 1 2 3 31 31 H 1.08997 * 109.46864 * 183.18882 * 3 2 1 32 32 H 1.09002 * 109.47197 * 303.19006 * 3 2 1 33 33 H 1.08994 * 109.47040 * 63.19207 * 3 2 1 34 34 H 1.08991 * 110.32208 * 104.89359 * 4 2 1 35 35 H 1.08997 * 110.32397 * 342.68439 * 4 2 1 36 36 H 0.97010 * 120.00165 * 93.54571 * 10 8 6 37 37 H 0.97000 * 119.99637 * 355.49465 * 13 11 10 38 38 H 1.08001 * 119.78553 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.83918 * 180.02562 * 16 15 14 40 40 H 1.08003 * 120.06237 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99974 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.16211 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0756 -0.7904 -1.2086 5 8 3.1614 -1.6040 -0.6708 6 6 2.8554 -1.9367 0.5966 7 8 3.1505 -2.9696 1.1497 8 6 2.0760 -0.7910 1.2092 9 1 1.2560 -1.1718 1.8181 10 7 2.9598 0.0545 2.0156 11 6 3.1948 -0.2545 3.3062 12 8 2.6737 -1.2351 3.8012 13 7 4.0083 0.5231 4.0480 14 6 4.1781 0.2576 5.4116 15 6 4.3368 1.3097 6.3104 16 6 4.5061 1.0584 7.6617 17 6 4.5199 -0.2357 8.1317 18 6 4.3607 -1.3090 7.2352 19 6 4.3744 -2.6408 7.7103 20 1 3.8768 -3.4189 7.1505 21 6 5.0373 -2.9515 8.9028 22 7 5.8806 -2.0978 9.4240 23 14 4.7182 -4.5853 9.7504 24 1 3.7293 -5.3660 8.9644 25 1 5.9880 -5.3491 9.8473 26 1 4.1832 -4.3394 11.1138 27 6 4.1936 -1.0488 5.8635 28 1 -0.3634 0.4635 0.9172 29 1 -0.3634 0.5625 -0.8600 30 1 -0.3634 -1.0261 -0.0572 31 1 3.1605 1.4067 -0.0572 32 1 1.6750 1.9698 -0.8600 33 1 1.7676 1.9347 0.9172 34 1 2.4551 -0.1067 -1.9678 35 1 1.2966 -1.4275 -1.6271 36 1 3.3759 0.8367 1.6206 37 1 4.4760 1.2668 3.6367 38 1 4.3286 2.3281 5.9510 39 1 4.6278 1.8814 8.3502 40 1 4.6526 -0.4268 9.1863 41 1 6.3404 -2.3134 10.2505 42 1 4.0753 -1.8654 5.1668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879844815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:19 Heat of formation + Delta-G solvation = -100.524161 kcal Electronic energy + Delta-G solvation = -26606.509626 eV Core-core repulsion = 22743.971846 eV Total energy + Delta-G solvation = -3862.537780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69811 -41.24656 -39.20244 -39.00355 -37.04183 -36.20774 -35.00028 -34.36122 -31.74408 -30.23489 -28.90383 -28.01048 -27.57204 -27.24524 -23.81717 -22.79622 -22.34597 -21.73317 -21.00314 -19.68836 -19.49867 -18.31030 -18.11970 -17.76125 -17.33578 -16.77804 -16.46832 -16.36247 -15.97090 -15.67575 -15.28213 -14.90299 -14.87674 -14.71360 -14.58972 -14.06827 -13.83449 -13.52003 -13.29571 -13.07239 -13.00206 -12.90944 -12.81528 -12.55832 -12.29706 -12.18200 -12.16313 -12.04577 -11.66788 -11.58899 -11.53629 -11.28093 -10.98343 -10.78618 -10.25355 -9.39026 -8.76334 -8.59475 -6.38221 0.52700 0.92245 1.02725 1.33985 1.46034 1.49486 1.55582 1.96407 2.20732 2.27433 2.72560 2.87528 3.00388 3.16492 3.54260 3.69132 3.73840 4.11076 4.19168 4.48518 4.52445 4.55346 4.65050 4.80163 4.86359 4.88952 5.01027 5.01889 5.08514 5.11427 5.16702 5.20593 5.30199 5.33157 5.33541 5.51525 5.67220 5.80892 6.02151 6.10796 6.13358 6.21324 6.35963 6.68866 6.93956 6.96014 7.01387 7.48167 8.32938 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.003226 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.421241 B = 8678.209231 C = 9675.961814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.466 3.534 7 O -0.485 6.485 8 C 0.113 3.887 9 H 0.108 0.892 10 N -0.706 5.706 11 C 0.690 3.310 12 O -0.606 6.606 13 N -0.664 5.664 14 C 0.171 3.829 15 C -0.243 4.243 16 C -0.090 4.090 17 C -0.197 4.197 18 C 0.087 3.913 19 C -0.504 4.504 20 H 0.056 0.944 21 C 0.038 3.962 22 N -0.822 5.822 23 Si 0.981 3.019 24 H -0.270 1.270 25 H -0.261 1.261 26 H -0.254 1.254 27 C -0.239 4.239 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.422 0.578 37 H 0.420 0.580 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.289 0.711 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 12.579 -21.524 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.205 4.205 4 C -0.018 4.018 5 O -0.279 6.279 6 C 0.304 3.696 7 O -0.366 6.366 8 C 0.004 3.996 9 H 0.126 0.874 10 N -0.370 5.370 11 C 0.390 3.610 12 O -0.483 6.483 13 N -0.312 5.312 14 C 0.077 3.923 15 C -0.264 4.264 16 C -0.109 4.109 17 C -0.217 4.217 18 C 0.084 3.916 19 C -0.534 4.534 20 H 0.074 0.926 21 C -0.177 4.177 22 N -0.448 5.448 23 Si 0.802 3.198 24 H -0.194 1.194 25 H -0.186 1.186 26 H -0.178 1.178 27 C -0.261 4.261 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.171 0.829 35 H 0.126 0.874 36 H 0.264 0.736 37 H 0.258 0.742 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.504 11.196 -20.814 25.118 hybrid contribution 0.529 -0.708 0.398 0.970 sum -7.975 10.488 -20.416 24.299 Atomic orbital electron populations 1.21904 0.89786 1.03372 1.04539 1.22145 0.99052 0.97474 0.90295 1.21945 1.01517 0.91874 1.05116 1.24800 0.87563 0.93573 0.95909 1.87291 1.44489 1.67798 1.28370 1.24351 0.76246 0.86740 0.82253 1.90745 1.51049 1.28253 1.66583 1.22229 0.92786 0.90043 0.94540 0.87411 1.44809 1.52650 1.31388 1.08136 1.16296 0.79952 0.82677 0.82048 1.91012 1.55649 1.29405 1.72247 1.42199 1.47404 1.34064 1.07564 1.17285 1.00078 0.93084 0.81817 1.20461 1.16692 0.96842 0.92440 1.20856 0.98888 0.95939 0.95219 1.21377 1.08672 0.92182 0.99433 1.17842 0.88610 0.94276 0.90838 1.19760 1.31899 0.94617 1.07114 0.92620 1.26665 0.91987 1.02694 0.96327 1.69849 1.18967 1.37538 1.18471 0.85189 0.79248 0.76907 0.78483 1.19409 1.18561 1.17816 1.21081 1.14692 0.95058 0.95236 0.91853 0.87872 0.92109 0.91295 0.87598 0.91074 0.82911 0.87415 0.73555 0.74223 0.84464 0.85488 0.87398 0.89983 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.32 71.98 0.60 -0.39 16 2 C -0.09 -0.89 1.09 -51.22 -0.06 -0.95 16 3 C -0.15 -0.71 7.12 71.98 0.51 -0.20 16 4 C 0.05 0.49 7.04 72.45 0.51 1.00 16 5 O -0.36 -8.09 11.17 -55.07 -0.61 -8.71 16 6 C 0.47 14.31 8.13 71.49 0.58 14.89 16 7 O -0.48 -20.97 18.00 21.54 0.39 -20.58 16 8 C 0.11 2.64 2.97 45.00 0.13 2.77 16 9 H 0.11 3.04 7.25 -2.39 -0.02 3.03 16 10 N -0.71 -17.40 4.67 -457.78 -2.14 -19.54 16 11 C 0.69 26.03 8.39 179.05 1.50 27.53 16 12 O -0.61 -30.62 13.52 -3.98 -0.05 -30.68 16 13 N -0.66 -23.54 5.34 -317.32 -1.69 -25.23 16 14 C 0.17 7.95 6.28 38.10 0.24 8.19 16 15 C -0.24 -10.18 9.97 22.58 0.23 -9.95 16 16 C -0.09 -4.14 10.02 22.20 0.22 -3.92 16 17 C -0.20 -10.86 8.69 22.75 0.20 -10.66 16 18 C 0.09 5.26 5.58 -21.31 -0.12 5.14 16 19 C -0.50 -31.01 9.06 23.46 0.21 -30.80 16 20 H 0.06 3.52 7.89 -2.91 -0.02 3.49 16 21 C 0.04 2.08 5.20 85.25 0.44 2.52 16 22 N -0.82 -45.29 10.82 21.82 0.24 -45.06 16 23 Si 0.98 42.24 29.59 68.60 2.03 44.27 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 27 C -0.24 -13.73 8.43 22.85 0.19 -13.54 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.06 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.07 0.31 7.04 -2.39 -0.02 0.30 16 32 H 0.11 -0.07 8.14 -2.39 -0.02 -0.08 16 33 H 0.07 0.45 7.74 -2.39 -0.02 0.43 16 34 H 0.15 0.25 7.82 -2.39 -0.02 0.23 16 35 H 0.11 0.61 7.77 -2.39 -0.02 0.59 16 36 H 0.42 6.56 5.86 -92.70 -0.54 6.02 16 37 H 0.42 10.32 8.84 -92.71 -0.82 9.50 16 38 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.11 6.15 6.08 -2.91 -0.02 6.13 16 41 H 0.29 14.20 8.30 -92.70 -0.77 13.43 16 42 H 0.08 5.04 6.27 -2.91 -0.02 5.03 16 Total: -1.00 -89.12 350.17 3.27 -85.86 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.28 Total: 28.02 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.40 Total: -8.36 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -3.59 Total: -89.82 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.28 Total: -59.96 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -89.12 3.27 -85.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879844815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.668 kcal (2) G-P(sol) polarization free energy of solvation -89.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds