Wall clock time and date at job start Tue Mar 31 2020 13:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.76387 * 2 1 4 4 C 1.54371 * 110.70011 * 236.81566 * 2 1 3 5 5 O 1.45949 * 105.06668 * 259.42966 * 4 2 1 6 6 C 1.34855 * 108.42603 * 327.51393 * 5 4 2 7 7 O 1.20827 * 126.10210 * 213.42029 * 6 5 4 8 8 C 1.51513 * 107.95174 * 33.37943 * 6 5 4 9 9 H 1.09001 * 110.39793 * 220.72971 * 8 6 5 10 10 N 1.46496 * 110.40448 * 98.41944 * 8 6 5 11 11 C 1.34779 * 119.99774 * 88.03742 * 10 8 6 12 12 O 1.21590 * 120.00134 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99634 * 180.27599 * 11 10 8 14 14 C 1.39965 * 119.99880 * 174.57559 * 13 11 10 15 15 C 1.39281 * 119.94190 * 325.52606 * 14 13 11 16 16 C 1.38492 * 120.42530 * 179.76746 * 15 14 13 17 17 C 1.37678 * 120.31988 * 0.50916 * 16 15 14 18 18 C 1.40743 * 119.88792 * 359.74824 * 17 16 15 19 19 C 1.41401 * 120.21526 * 179.97438 * 18 17 16 20 20 H 1.08010 * 119.99932 * 25.17367 * 19 18 17 21 21 C 1.39934 * 120.00161 * 205.18056 * 19 18 17 22 22 N 1.30826 * 119.99642 * 16.77367 * 21 19 18 23 23 Si 1.86802 * 119.99754 * 196.77797 * 21 19 18 24 24 H 1.48503 * 109.47327 * 59.99950 * 23 21 19 25 25 H 1.48507 * 109.46679 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47207 * 299.99277 * 23 21 19 27 27 C 1.38229 * 119.94706 * 145.80509 * 14 13 11 28 28 H 1.08997 * 109.46678 * 296.80581 * 1 2 3 29 29 H 1.08992 * 109.47424 * 56.80947 * 1 2 3 30 30 H 1.09004 * 109.46959 * 176.81359 * 1 2 3 31 31 H 1.08995 * 109.47719 * 183.18575 * 3 2 1 32 32 H 1.08998 * 109.47265 * 303.19410 * 3 2 1 33 33 H 1.09000 * 109.46872 * 63.18820 * 3 2 1 34 34 H 1.08996 * 110.32462 * 18.32676 * 4 2 1 35 35 H 1.08995 * 110.32436 * 140.42888 * 4 2 1 36 36 H 0.96995 * 120.00600 * 268.03477 * 10 8 6 37 37 H 0.96993 * 120.00176 * 354.56737 * 13 11 10 38 38 H 1.07999 * 119.79288 * 0.02562 * 15 14 13 39 39 H 1.08004 * 119.84050 * 180.23701 * 16 15 14 40 40 H 1.08003 * 120.05687 * 179.76948 * 17 16 15 41 41 H 0.97009 * 119.99680 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.16016 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0756 -0.7904 -1.2085 5 8 2.4516 -2.0941 -0.6708 6 6 2.8731 -1.9259 0.5991 7 8 3.7347 -2.5659 1.1539 8 6 2.0760 -0.7910 1.2092 9 1 2.7216 -0.1575 1.8176 10 7 0.9722 -1.3177 2.0156 11 6 1.1692 -1.6146 3.3155 12 8 2.2631 -1.4457 3.8187 13 7 0.1551 -2.1045 4.0559 14 6 0.3867 -2.5192 5.3725 15 6 1.6024 -3.1078 5.7123 16 6 1.8440 -3.5174 7.0130 17 6 0.8800 -3.3566 7.9827 18 6 -0.3553 -2.7683 7.6529 19 6 -1.3505 -2.6003 8.6433 20 1 -1.0700 -2.5280 9.6838 21 6 -2.6986 -2.5278 8.2753 22 7 -3.0761 -2.9350 7.0907 23 14 -3.9591 -1.8495 9.4755 24 1 -3.6069 -0.4498 9.8250 25 1 -5.3051 -1.8790 8.8488 26 1 -3.9675 -2.6800 10.7065 27 6 -0.5937 -2.3492 6.3320 28 1 -0.3632 0.4634 0.9172 29 1 -0.3634 0.5625 -0.8599 30 1 -0.3633 -1.0261 -0.0571 31 1 3.1606 1.4067 -0.0571 32 1 1.6751 1.9698 -0.8599 33 1 1.7677 1.9346 0.9172 34 1 1.3018 -0.9030 -1.9679 35 1 2.9465 -0.2869 -1.6282 36 1 0.0997 -1.4529 1.6141 37 1 -0.7351 -2.1696 3.6764 38 1 2.3633 -3.2418 4.9576 39 1 2.7916 -3.9692 7.2669 40 1 1.0716 -3.6810 8.9949 41 1 -4.0106 -2.8844 6.8355 42 1 -1.5383 -1.8967 6.0684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879844816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:27 Heat of formation + Delta-G solvation = -78.353469 kcal Electronic energy + Delta-G solvation = -26604.630915 eV Core-core repulsion = 22743.054528 eV Total energy + Delta-G solvation = -3861.576387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.68885 -39.71502 -37.91962 -37.37803 -36.00028 -34.24066 -33.60838 -33.09035 -29.51312 -28.87559 -28.17804 -27.06672 -27.00118 -25.20217 -22.24901 -21.20818 -20.93542 -20.39945 -19.89839 -18.34813 -17.56357 -17.18667 -17.07309 -16.69748 -15.74810 -15.20939 -14.96065 -14.63753 -14.60835 -14.49684 -14.19048 -14.12926 -13.86071 -13.11416 -13.06103 -12.77061 -12.62409 -12.54569 -12.31754 -11.81876 -11.73792 -11.65197 -11.47648 -11.24781 -11.10554 -10.86665 -10.83243 -10.66958 -10.59862 -10.09034 -9.70628 -9.57728 -9.22596 -9.04946 -8.96792 -7.33989 -6.97746 -6.66458 -4.34465 1.66034 2.65825 2.82648 2.93159 3.06160 3.10217 3.17668 3.26318 3.56226 3.60882 3.91854 3.94622 4.11239 4.16565 4.53383 4.63004 4.68950 4.88694 4.94560 5.12786 5.15197 5.28217 5.31879 5.45763 5.66264 5.70211 5.71622 6.26648 6.29879 6.38671 6.70281 6.72167 6.74372 6.99049 7.08714 7.21635 7.29595 7.36821 7.66158 7.83167 8.01332 8.06401 8.28074 8.40914 8.61626 8.90364 8.91702 9.02161 10.21129 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.003146 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.873699 B = 8898.868520 C = 9829.815802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.468 3.532 7 O -0.419 6.419 8 C 0.118 3.882 9 H 0.130 0.870 10 N -0.734 5.734 11 C 0.697 3.303 12 O -0.559 6.559 13 N -0.674 5.674 14 C 0.161 3.839 15 C -0.224 4.224 16 C -0.085 4.085 17 C -0.228 4.228 18 C 0.121 3.879 19 C -0.464 4.464 20 H 0.078 0.922 21 C 0.077 3.923 22 N -0.801 5.801 23 Si 0.907 3.093 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.266 1.266 27 C -0.182 4.182 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.402 0.598 37 H 0.398 0.602 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.278 0.722 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 8.731 -18.272 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.196 4.196 4 C -0.013 4.013 5 O -0.271 6.271 6 C 0.304 3.696 7 O -0.295 6.295 8 C 0.009 3.991 9 H 0.147 0.853 10 N -0.396 5.396 11 C 0.397 3.603 12 O -0.433 6.433 13 N -0.320 5.320 14 C 0.069 3.931 15 C -0.245 4.245 16 C -0.104 4.104 17 C -0.248 4.248 18 C 0.118 3.882 19 C -0.494 4.494 20 H 0.096 0.904 21 C -0.139 4.139 22 N -0.427 5.427 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.204 4.204 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.240 0.760 37 H 0.232 0.768 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.532 8.314 -17.804 19.812 hybrid contribution -1.576 0.181 0.074 1.588 sum 0.956 8.495 -17.730 19.683 Atomic orbital electron populations 1.21863 0.91936 1.02701 1.03759 1.22089 0.98259 0.96894 0.93551 1.21855 1.01311 0.92906 1.03549 1.24237 1.01318 0.80024 0.95766 1.87379 1.78031 1.31860 1.29865 1.23907 0.80452 0.83980 0.81303 1.90756 1.26124 1.47917 1.64746 1.22000 0.90067 0.93996 0.93049 0.85272 1.45083 1.13153 1.72136 1.09218 1.16010 0.85126 0.78538 0.80591 1.90978 1.23567 1.57883 1.70900 1.42555 1.10618 1.65453 1.13354 1.17395 0.96219 0.98361 0.81111 1.20361 0.97587 1.09734 0.96863 1.20422 0.97370 0.99522 0.93097 1.21042 0.96630 1.09081 0.98080 1.17330 0.91340 0.87694 0.91825 1.19496 0.90417 1.44725 0.94798 0.90432 1.25857 0.99697 0.92632 0.95749 1.69816 1.18313 1.34301 1.20284 0.86389 0.78807 0.80563 0.81046 1.18924 1.20462 1.19054 1.21021 0.99251 1.07360 0.92739 0.90690 0.90895 0.91649 0.91681 0.91124 0.90981 0.86847 0.89370 0.76026 0.76762 0.87908 0.89019 0.88864 0.91094 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 7.13 37.16 0.26 -0.50 16 2 C -0.11 -0.71 1.09 -153.02 -0.17 -0.88 16 3 C -0.14 -0.71 8.31 37.15 0.31 -0.40 16 4 C 0.06 0.38 7.04 37.88 0.27 0.65 16 5 O -0.35 -4.09 11.18 -40.52 -0.45 -4.55 16 6 C 0.47 6.78 8.16 36.41 0.30 7.07 16 7 O -0.42 -8.03 18.00 -18.29 -0.33 -8.36 16 8 C 0.12 1.38 2.99 -67.91 -0.20 1.18 16 9 H 0.13 1.68 7.20 -51.93 -0.37 1.31 16 10 N -0.73 -9.56 4.62 -58.66 -0.27 -9.84 16 11 C 0.70 12.98 8.29 -86.92 -0.72 12.26 16 12 O -0.56 -12.80 13.76 5.29 0.07 -12.73 16 13 N -0.67 -12.96 5.34 -14.27 -0.08 -13.04 16 14 C 0.16 3.87 6.25 -83.76 -0.52 3.34 16 15 C -0.22 -5.60 8.66 -39.10 -0.34 -5.94 16 16 C -0.09 -2.08 10.02 -39.69 -0.40 -2.47 16 17 C -0.23 -5.81 9.79 -38.84 -0.38 -6.19 16 18 C 0.12 3.26 5.57 -106.85 -0.59 2.66 16 19 C -0.46 -12.30 9.05 -37.74 -0.34 -12.65 16 20 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 21 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 22 N -0.80 -20.06 10.94 55.55 0.61 -19.46 16 23 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.18 -4.66 8.60 -38.69 -0.33 -5.00 16 28 H 0.07 0.45 7.76 -51.93 -0.40 0.05 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.34 7.02 -51.93 -0.36 -0.02 16 31 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.43 7.82 -51.93 -0.41 0.02 16 35 H 0.09 0.40 7.77 -51.93 -0.40 -0.01 16 36 H 0.40 3.96 5.92 -40.82 -0.24 3.72 16 37 H 0.40 6.32 8.83 -40.82 -0.36 5.96 16 38 H 0.10 2.63 6.47 -52.49 -0.34 2.29 16 39 H 0.09 1.99 8.06 -52.48 -0.42 1.56 16 40 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 42 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -34.29 350.65 -8.45 -42.74 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.30 Total: 11.53 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.95 Total: -5.03 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.26 Total: -42.33 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.71 Total: -25.63 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.29 -8.45 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879844816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.614 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds