Wall clock time and date at job start Tue Mar 31 2020 13:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.76387 * 2 1 4 4 C 1.54371 * 110.70011 * 236.81566 * 2 1 3 5 5 O 1.45949 * 105.06668 * 259.42966 * 4 2 1 6 6 C 1.34855 * 108.42603 * 327.51393 * 5 4 2 7 7 O 1.20827 * 126.10210 * 213.42029 * 6 5 4 8 8 C 1.51513 * 107.95174 * 33.37943 * 6 5 4 9 9 H 1.09001 * 110.39793 * 220.72971 * 8 6 5 10 10 N 1.46496 * 110.40448 * 98.41944 * 8 6 5 11 11 C 1.34779 * 119.99774 * 88.03742 * 10 8 6 12 12 O 1.21590 * 120.00134 * 359.97438 * 11 10 8 13 13 N 1.34777 * 119.99634 * 180.27599 * 11 10 8 14 14 C 1.39965 * 119.99880 * 174.57559 * 13 11 10 15 15 C 1.39281 * 119.94190 * 325.52606 * 14 13 11 16 16 C 1.38492 * 120.42530 * 179.76746 * 15 14 13 17 17 C 1.37678 * 120.31988 * 0.50916 * 16 15 14 18 18 C 1.40743 * 119.88792 * 359.74824 * 17 16 15 19 19 C 1.41401 * 120.21526 * 179.97438 * 18 17 16 20 20 H 1.08010 * 119.99932 * 25.17367 * 19 18 17 21 21 C 1.39934 * 120.00161 * 205.18056 * 19 18 17 22 22 N 1.30826 * 119.99642 * 16.77367 * 21 19 18 23 23 Si 1.86802 * 119.99754 * 196.77797 * 21 19 18 24 24 H 1.48503 * 109.47327 * 59.99950 * 23 21 19 25 25 H 1.48507 * 109.46679 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47207 * 299.99277 * 23 21 19 27 27 C 1.38229 * 119.94706 * 145.80509 * 14 13 11 28 28 H 1.08997 * 109.46678 * 296.80581 * 1 2 3 29 29 H 1.08992 * 109.47424 * 56.80947 * 1 2 3 30 30 H 1.09004 * 109.46959 * 176.81359 * 1 2 3 31 31 H 1.08995 * 109.47719 * 183.18575 * 3 2 1 32 32 H 1.08998 * 109.47265 * 303.19410 * 3 2 1 33 33 H 1.09000 * 109.46872 * 63.18820 * 3 2 1 34 34 H 1.08996 * 110.32462 * 18.32676 * 4 2 1 35 35 H 1.08995 * 110.32436 * 140.42888 * 4 2 1 36 36 H 0.96995 * 120.00600 * 268.03477 * 10 8 6 37 37 H 0.96993 * 120.00176 * 354.56737 * 13 11 10 38 38 H 1.07999 * 119.79288 * 0.02562 * 15 14 13 39 39 H 1.08004 * 119.84050 * 180.23701 * 16 15 14 40 40 H 1.08003 * 120.05687 * 179.76948 * 17 16 15 41 41 H 0.97009 * 119.99680 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.16016 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4306 0.0000 4 6 2.0756 -0.7904 -1.2085 5 8 2.4516 -2.0941 -0.6708 6 6 2.8731 -1.9259 0.5991 7 8 3.7347 -2.5659 1.1539 8 6 2.0760 -0.7910 1.2092 9 1 2.7216 -0.1575 1.8176 10 7 0.9722 -1.3177 2.0156 11 6 1.1692 -1.6146 3.3155 12 8 2.2631 -1.4457 3.8187 13 7 0.1551 -2.1045 4.0559 14 6 0.3867 -2.5192 5.3725 15 6 1.6024 -3.1078 5.7123 16 6 1.8440 -3.5174 7.0130 17 6 0.8800 -3.3566 7.9827 18 6 -0.3553 -2.7683 7.6529 19 6 -1.3505 -2.6003 8.6433 20 1 -1.0700 -2.5280 9.6838 21 6 -2.6986 -2.5278 8.2753 22 7 -3.0761 -2.9350 7.0907 23 14 -3.9591 -1.8495 9.4755 24 1 -3.6069 -0.4498 9.8250 25 1 -5.3051 -1.8790 8.8488 26 1 -3.9675 -2.6800 10.7065 27 6 -0.5937 -2.3492 6.3320 28 1 -0.3632 0.4634 0.9172 29 1 -0.3634 0.5625 -0.8599 30 1 -0.3633 -1.0261 -0.0571 31 1 3.1606 1.4067 -0.0571 32 1 1.6751 1.9698 -0.8599 33 1 1.7677 1.9346 0.9172 34 1 1.3018 -0.9030 -1.9679 35 1 2.9465 -0.2869 -1.6282 36 1 0.0997 -1.4529 1.6141 37 1 -0.7351 -2.1696 3.6764 38 1 2.3633 -3.2418 4.9576 39 1 2.7916 -3.9692 7.2669 40 1 1.0716 -3.6810 8.9949 41 1 -4.0106 -2.8844 6.8355 42 1 -1.5383 -1.8967 6.0684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879844816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:25 Heat of formation + Delta-G solvation = -100.974218 kcal Electronic energy + Delta-G solvation = -26605.611825 eV Core-core repulsion = 22743.054528 eV Total energy + Delta-G solvation = -3862.557296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.67157 -41.23353 -39.21632 -38.99935 -37.01948 -35.99944 -35.19249 -34.43358 -31.46118 -30.43573 -28.93776 -28.04351 -27.56494 -27.15668 -23.70233 -23.06554 -22.23949 -21.66553 -21.01261 -19.76702 -19.23904 -18.44505 -18.10015 -17.76282 -17.41265 -16.64901 -16.55430 -16.20244 -16.05792 -15.65137 -15.31899 -14.91148 -14.88069 -14.63000 -14.55369 -14.19130 -13.85564 -13.51526 -13.31328 -13.11430 -12.99680 -12.83025 -12.64269 -12.53635 -12.34999 -12.29578 -12.13544 -11.88282 -11.68395 -11.58343 -11.54056 -11.34459 -11.07345 -10.81815 -10.25215 -9.33271 -8.84830 -8.53570 -6.34338 0.51879 0.88785 1.05515 1.42181 1.51723 1.53872 1.57769 1.96069 2.24161 2.25943 2.76572 2.87365 3.00869 3.15090 3.53662 3.68413 3.72562 4.10129 4.18463 4.43262 4.52209 4.55719 4.72052 4.78552 4.83502 4.85247 4.88797 5.00536 5.08768 5.12523 5.15798 5.17693 5.28954 5.32333 5.33935 5.50786 5.68672 5.78429 5.96619 6.08512 6.10515 6.20121 6.37032 6.66453 6.89737 6.94684 7.01073 7.43524 8.35825 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.003146 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.873699 B = 8898.868520 C = 9829.815802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.138 4.138 4 C 0.055 3.945 5 O -0.362 6.362 6 C 0.469 3.531 7 O -0.481 6.481 8 C 0.112 3.888 9 H 0.113 0.887 10 N -0.709 5.709 11 C 0.695 3.305 12 O -0.603 6.603 13 N -0.668 5.668 14 C 0.170 3.830 15 C -0.244 4.244 16 C -0.084 4.084 17 C -0.249 4.249 18 C 0.095 3.905 19 C -0.498 4.498 20 H 0.076 0.924 21 C 0.040 3.960 22 N -0.820 5.820 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.264 1.264 26 H -0.263 1.263 27 C -0.199 4.199 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.420 0.580 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.290 0.710 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 10.294 -20.256 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.018 4.018 5 O -0.280 6.280 6 C 0.307 3.693 7 O -0.362 6.362 8 C 0.004 3.996 9 H 0.131 0.869 10 N -0.372 5.372 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.316 5.316 14 C 0.076 3.924 15 C -0.265 4.265 16 C -0.103 4.103 17 C -0.269 4.269 18 C 0.092 3.908 19 C -0.528 4.528 20 H 0.094 0.906 21 C -0.176 4.176 22 N -0.446 5.446 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.189 1.189 26 H -0.187 1.187 27 C -0.221 4.221 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.262 0.738 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.319 9.896 -19.891 22.219 hybrid contribution -0.912 -0.290 0.544 1.101 sum -0.593 9.606 -19.347 21.609 Atomic orbital electron populations 1.21941 0.90352 1.03333 1.04907 1.22144 0.99376 0.96994 0.90616 1.21896 1.01454 0.91753 1.04435 1.24770 1.03503 0.77696 0.95785 1.87353 1.77335 1.34873 1.28445 1.24323 0.79483 0.83273 0.82181 1.90717 1.28951 1.50237 1.66343 1.22243 0.89508 0.93381 0.94493 0.86949 1.44850 1.14504 1.70653 1.07215 1.16183 0.84102 0.78113 0.82000 1.90951 1.25271 1.59607 1.72295 1.42364 1.11797 1.65344 1.12062 1.17396 0.95322 0.96937 0.82764 1.20439 0.97964 1.11027 0.97055 1.20687 0.98104 0.98759 0.92716 1.21202 0.96803 1.10045 0.98830 1.17741 0.92189 0.88111 0.92745 1.19766 0.91705 1.46489 0.94802 0.90555 1.26690 1.01050 0.92104 0.97717 1.69842 1.19533 1.33582 1.21613 0.85256 0.76372 0.79533 0.78536 1.18737 1.18861 1.18700 1.20971 0.99556 1.08604 0.92931 0.91431 0.87707 0.91486 0.91744 0.88035 0.91995 0.83183 0.87157 0.73832 0.74819 0.88900 0.86697 0.87969 0.89971 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 7.13 71.98 0.51 -0.49 16 2 C -0.09 -0.95 1.09 -51.22 -0.06 -1.01 16 3 C -0.14 -1.01 8.31 71.98 0.60 -0.41 16 4 C 0.06 0.50 7.04 72.45 0.51 1.01 16 5 O -0.36 -7.88 11.18 -58.05 -0.65 -8.53 16 6 C 0.47 13.76 8.16 71.49 0.58 14.34 16 7 O -0.48 -19.48 18.00 21.52 0.39 -19.09 16 8 C 0.11 2.58 2.99 45.00 0.13 2.72 16 9 H 0.11 3.03 7.20 -2.39 -0.02 3.01 16 10 N -0.71 -18.16 4.62 -457.75 -2.12 -20.28 16 11 C 0.70 26.39 8.29 179.05 1.48 27.87 16 12 O -0.60 -28.74 13.76 -4.00 -0.06 -28.80 16 13 N -0.67 -26.01 5.34 -317.32 -1.69 -27.71 16 14 C 0.17 8.34 6.25 38.09 0.24 8.58 16 15 C -0.24 -12.55 8.66 22.58 0.20 -12.36 16 16 C -0.08 -4.19 10.02 22.20 0.22 -3.97 16 17 C -0.25 -13.01 9.79 22.75 0.22 -12.78 16 18 C 0.10 5.25 5.57 -21.31 -0.12 5.13 16 19 C -0.50 -26.83 9.05 23.46 0.21 -26.62 16 20 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 21 C 0.04 1.95 5.16 85.25 0.44 2.39 16 22 N -0.82 -40.78 10.94 21.82 0.24 -40.54 16 23 Si 0.98 37.12 29.59 68.60 2.03 39.15 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 25 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 27 C -0.20 -10.43 8.60 22.85 0.20 -10.24 16 28 H 0.07 0.61 7.76 -2.39 -0.02 0.59 16 29 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.07 0.46 7.02 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.15 0.33 7.82 -2.39 -0.02 0.31 16 35 H 0.11 0.57 7.77 -2.39 -0.02 0.55 16 36 H 0.42 7.60 5.92 -92.71 -0.55 7.05 16 37 H 0.41 13.03 8.83 -92.71 -0.82 12.21 16 38 H 0.09 4.95 6.47 -2.91 -0.02 4.93 16 39 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 40 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 41 H 0.29 12.87 8.30 -92.70 -0.77 12.10 16 42 H 0.12 6.18 6.17 -2.91 -0.02 6.16 16 Total: -1.00 -78.95 350.65 3.23 -75.72 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -0.29 Total: 35.91 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.38 Total: -5.83 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -3.57 Total: -88.54 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.32 Total: -56.42 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -78.95 3.23 -75.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879844816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.250 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds