Wall clock time and date at job start Tue Mar 31 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46955 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46844 * 120.00376 * 3 2 1 7 7 C 1.39931 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99859 * 196.78029 * 7 2 1 9 9 C 1.41406 * 120.00148 * 16.78141 * 7 2 1 10 10 C 1.40775 * 120.21209 * 25.16615 * 9 7 2 11 11 C 1.37639 * 119.88984 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31799 * 0.02562 * 11 10 9 13 13 C 1.39242 * 120.42436 * 359.96451 * 12 11 10 14 14 N 1.39962 * 119.94308 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99798 * 145.76594 * 14 13 12 16 16 O 1.21580 * 120.00214 * 354.85440 * 15 14 13 17 17 N 1.34775 * 119.99458 * 174.84665 * 15 14 13 18 18 C 1.46504 * 119.99912 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47292 * 179.97438 * 18 17 15 20 20 O 1.45196 * 109.46564 * 65.00506 * 19 18 17 21 21 C 1.34236 * 116.99634 * 179.97438 * 20 19 18 22 22 O 1.20815 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.99858 * 179.97438 * 21 20 19 24 24 C 1.52999 * 117.50226 * 248.75336 * 23 21 20 25 25 C 1.53001 * 117.49807 * 180.09065 * 23 21 20 26 26 C 1.38272 * 120.11138 * 0.26826 * 13 12 11 27 27 H 0.96997 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05672 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.84509 * 180.02562 * 11 10 9 30 30 H 1.07992 * 119.78724 * 179.97438 * 12 11 10 31 31 H 0.97001 * 119.99698 * 325.77381 * 14 13 12 32 32 H 0.96999 * 120.00916 * 0.02562 * 17 15 14 33 33 H 1.09007 * 109.46807 * 60.00436 * 18 17 15 34 34 H 1.08997 * 109.47245 * 300.00817 * 18 17 15 35 35 H 1.09001 * 109.46856 * 184.99887 * 19 18 17 36 36 H 1.08993 * 109.47197 * 305.00485 * 19 18 17 37 37 H 1.09005 * 115.54731 * 34.42781 * 23 21 20 38 38 H 1.08993 * 117.49598 * 359.97438 * 24 23 21 39 39 H 1.08998 * 117.49643 * 145.02646 * 24 23 21 40 40 H 1.09000 * 117.49716 * 214.98628 * 25 23 21 41 41 H 1.09001 * 117.49884 * 359.97438 * 25 23 21 42 42 H 1.07998 * 120.16130 * 179.74680 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0535 -1.2319 0.2695 9 6 1.3460 -2.4102 -0.3546 10 6 0.2106 -2.3733 -1.1860 11 6 -0.4288 -3.5438 -1.5261 12 6 0.0392 -4.7591 -1.0536 13 6 1.1612 -4.8110 -0.2307 14 7 1.6250 -6.0443 0.2413 15 6 2.9467 -6.2472 0.4105 16 8 3.7417 -5.3944 0.0657 17 7 3.3869 -7.3954 0.9620 18 6 4.8234 -7.6158 1.1466 19 6 5.0509 -8.9861 1.7882 20 8 4.6171 -10.0268 0.8733 21 6 4.7504 -11.2966 1.2875 22 8 5.2139 -11.5307 2.3784 23 6 4.3210 -12.4303 0.3921 24 6 3.0972 -13.2432 0.8191 25 6 4.4967 -13.8547 0.9223 26 6 1.8143 -3.6456 0.1259 27 1 -0.4849 0.8401 0.0004 28 1 -0.1582 -1.4282 -1.5564 29 1 -1.2996 -3.5146 -2.1642 30 1 -0.4694 -5.6722 -1.3255 31 1 0.9953 -6.7529 0.4464 32 1 2.7527 -8.0759 1.2369 33 1 5.2298 -6.8395 1.7950 34 1 5.3238 -7.5796 0.1789 35 1 6.1112 -9.1133 2.0067 36 1 4.4785 -9.0537 2.7132 37 1 4.4704 -12.2686 -0.6754 38 1 2.6029 -12.9583 1.7478 39 1 2.4417 -13.6167 0.0324 40 1 4.7613 -14.6302 0.2035 41 1 4.9233 -13.9719 1.9185 42 1 2.6822 -3.6845 0.7675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879845485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:24 Heat of formation + Delta-G solvation = -66.265158 kcal Electronic energy + Delta-G solvation = -25042.024348 eV Core-core repulsion = 21180.972150 eV Total energy + Delta-G solvation = -3861.052198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98261 -39.88206 -37.91470 -37.27426 -36.31183 -34.80453 -34.26441 -32.98278 -30.21546 -29.76425 -27.73558 -25.77183 -25.23326 -23.06565 -22.95647 -21.53864 -20.83084 -20.76371 -20.05797 -18.40747 -18.05657 -17.66018 -16.96574 -16.83093 -15.75921 -15.42929 -15.34104 -15.09127 -14.66794 -14.45825 -14.26428 -13.88755 -13.50834 -13.18868 -12.84095 -12.83030 -12.76131 -12.19614 -12.11429 -11.91449 -11.60572 -11.22720 -11.18509 -11.14000 -11.07043 -11.05157 -10.86415 -10.81145 -10.45163 -10.16782 -9.67982 -9.45804 -9.09141 -8.97487 -8.92439 -7.39209 -6.84360 -6.65654 -4.28473 1.69120 2.17008 2.77078 2.90674 3.05613 3.11598 3.15729 3.25435 3.27151 3.74808 4.00210 4.13417 4.19579 4.29696 4.45787 4.53732 4.60812 4.70365 4.76463 4.97739 5.07233 5.21494 5.39445 5.50439 5.55439 5.61330 5.77509 6.03966 6.28574 6.44930 6.50964 6.80745 6.84068 7.09470 7.14225 7.29087 7.37315 7.39130 7.73543 7.87547 8.04841 8.15898 8.29762 8.47154 8.71460 8.94573 9.02420 9.08534 10.26622 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026453 B = 0.002174 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.229416 B =12873.654748 C =13732.322633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.169 3.831 14 N -0.681 5.681 15 C 0.699 3.301 16 O -0.566 6.566 17 N -0.750 5.750 18 C 0.143 3.857 19 C 0.056 3.944 20 O -0.348 6.348 21 C 0.492 3.508 22 O -0.509 6.509 23 C -0.173 4.173 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.210 4.210 27 H 0.280 0.720 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.394 0.606 32 H 0.394 0.606 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -22.283 2.103 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.327 5.327 15 C 0.400 3.600 16 O -0.441 6.441 17 N -0.408 5.408 18 C 0.018 3.982 19 C -0.018 4.018 20 O -0.264 6.264 21 C 0.336 3.664 22 O -0.398 6.398 23 C -0.192 4.192 24 C -0.185 4.185 25 C -0.184 4.184 26 C -0.232 4.232 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.228 0.772 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.724 -21.353 2.167 22.213 hybrid contribution -0.221 0.118 0.358 0.437 sum 5.503 -21.235 2.525 22.081 Atomic orbital electron populations 1.69825 1.07501 1.29127 1.35760 1.25899 0.94742 1.01226 0.92306 0.86364 0.80105 0.80199 0.80007 1.18823 1.20426 1.19061 1.19541 0.97741 0.90955 1.40557 0.90437 1.17487 0.90886 0.91625 0.88310 1.21333 0.99425 0.96836 1.01689 1.20444 0.98523 0.92687 0.99478 1.20007 1.02626 0.96865 1.08983 1.17224 0.95851 0.82586 0.96625 1.42574 1.05246 1.15830 1.69046 1.15929 0.83022 0.82144 0.78949 1.90982 1.54171 1.43930 1.55064 1.45037 1.07631 1.19674 1.68483 1.21222 0.81769 0.92873 1.02299 1.23456 1.01548 0.84683 0.92149 1.86548 1.76635 1.15476 1.47758 1.22588 0.74795 0.83407 0.85642 1.90672 1.41636 1.85080 1.22363 1.21743 1.07399 0.89806 1.00250 1.23060 0.90752 1.00786 1.03865 1.23114 0.99130 0.92294 1.03861 1.20991 1.04338 0.90903 1.06954 0.90956 0.86354 0.89080 0.89381 0.77276 0.77216 0.88993 0.90284 0.89239 0.90239 0.84475 0.87928 0.86984 0.87181 0.87211 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.94 55.55 0.61 -20.38 16 2 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 3 Si 0.91 19.36 29.59 -169.99 -5.03 14.33 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 8 H 0.08 2.13 7.90 -52.48 -0.41 1.71 16 9 C 0.12 3.36 5.57 -106.85 -0.59 2.76 16 10 C -0.17 -4.61 8.69 -38.84 -0.34 -4.95 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.58 16 12 C -0.26 -5.89 9.97 -39.10 -0.39 -6.28 16 13 C 0.17 3.91 6.25 -83.76 -0.52 3.39 16 14 N -0.68 -12.39 5.34 -14.27 -0.08 -12.47 16 15 C 0.70 12.80 8.29 -86.92 -0.72 12.08 16 16 O -0.57 -13.04 14.10 5.30 0.07 -12.97 16 17 N -0.75 -9.61 5.51 -65.22 -0.36 -9.97 16 18 C 0.14 1.57 6.07 -4.04 -0.02 1.54 16 19 C 0.06 0.49 5.60 37.16 0.21 0.70 16 20 O -0.35 -3.40 10.17 -39.27 -0.40 -3.80 16 21 C 0.49 4.76 7.74 36.01 0.28 5.04 16 22 O -0.51 -6.13 16.01 -18.74 -0.30 -6.43 16 23 C -0.17 -1.16 6.30 -91.77 -0.58 -1.74 16 24 C -0.15 -0.77 10.24 -26.69 -0.27 -1.04 16 25 C -0.15 -0.80 10.05 -26.69 -0.27 -1.07 16 26 C -0.21 -5.56 8.39 -38.69 -0.32 -5.89 16 27 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 28 H 0.12 3.23 6.17 -52.49 -0.32 2.90 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.39 5.53 8.84 -40.82 -0.36 5.17 16 32 H 0.39 3.95 8.49 -40.82 -0.35 3.61 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.72 7.67 -51.93 -0.40 0.32 16 42 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -33.88 365.43 -9.90 -43.78 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.55 Total: 11.69 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.38 Total: -9.29 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.17 Total: -42.82 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.62 Total: -23.20 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.88 -9.90 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879845485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.485 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds