Wall clock time and date at job start Tue Mar 31 2020 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46955 * 240.00120 * 3 2 1 5 5 H 1.48498 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46844 * 120.00376 * 3 2 1 7 7 C 1.39931 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99859 * 196.78029 * 7 2 1 9 9 C 1.41406 * 120.00148 * 16.78141 * 7 2 1 10 10 C 1.40775 * 120.21209 * 25.16615 * 9 7 2 11 11 C 1.37639 * 119.88984 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31799 * 0.02562 * 11 10 9 13 13 C 1.39242 * 120.42436 * 359.96451 * 12 11 10 14 14 N 1.39962 * 119.94308 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99798 * 145.76594 * 14 13 12 16 16 O 1.21580 * 120.00214 * 354.85440 * 15 14 13 17 17 N 1.34775 * 119.99458 * 174.84665 * 15 14 13 18 18 C 1.46504 * 119.99912 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47292 * 179.97438 * 18 17 15 20 20 O 1.45196 * 109.46564 * 65.00506 * 19 18 17 21 21 C 1.34236 * 116.99634 * 179.97438 * 20 19 18 22 22 O 1.20815 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.99858 * 179.97438 * 21 20 19 24 24 C 1.52999 * 117.50226 * 248.75336 * 23 21 20 25 25 C 1.53001 * 117.49807 * 180.09065 * 23 21 20 26 26 C 1.38272 * 120.11138 * 0.26826 * 13 12 11 27 27 H 0.96997 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05672 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.84509 * 180.02562 * 11 10 9 30 30 H 1.07992 * 119.78724 * 179.97438 * 12 11 10 31 31 H 0.97001 * 119.99698 * 325.77381 * 14 13 12 32 32 H 0.96999 * 120.00916 * 0.02562 * 17 15 14 33 33 H 1.09007 * 109.46807 * 60.00436 * 18 17 15 34 34 H 1.08997 * 109.47245 * 300.00817 * 18 17 15 35 35 H 1.09001 * 109.46856 * 184.99887 * 19 18 17 36 36 H 1.08993 * 109.47197 * 305.00485 * 19 18 17 37 37 H 1.09005 * 115.54731 * 34.42781 * 23 21 20 38 38 H 1.08993 * 117.49598 * 359.97438 * 24 23 21 39 39 H 1.08998 * 117.49643 * 145.02646 * 24 23 21 40 40 H 1.09000 * 117.49716 * 214.98628 * 25 23 21 41 41 H 1.09001 * 117.49884 * 359.97438 * 25 23 21 42 42 H 1.07998 * 120.16130 * 179.74680 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0535 -1.2319 0.2695 9 6 1.3460 -2.4102 -0.3546 10 6 0.2106 -2.3733 -1.1860 11 6 -0.4288 -3.5438 -1.5261 12 6 0.0392 -4.7591 -1.0536 13 6 1.1612 -4.8110 -0.2307 14 7 1.6250 -6.0443 0.2413 15 6 2.9467 -6.2472 0.4105 16 8 3.7417 -5.3944 0.0657 17 7 3.3869 -7.3954 0.9620 18 6 4.8234 -7.6158 1.1466 19 6 5.0509 -8.9861 1.7882 20 8 4.6171 -10.0268 0.8733 21 6 4.7504 -11.2966 1.2875 22 8 5.2139 -11.5307 2.3784 23 6 4.3210 -12.4303 0.3921 24 6 3.0972 -13.2432 0.8191 25 6 4.4967 -13.8547 0.9223 26 6 1.8143 -3.6456 0.1259 27 1 -0.4849 0.8401 0.0004 28 1 -0.1582 -1.4282 -1.5564 29 1 -1.2996 -3.5146 -2.1642 30 1 -0.4694 -5.6722 -1.3255 31 1 0.9953 -6.7529 0.4464 32 1 2.7527 -8.0759 1.2369 33 1 5.2298 -6.8395 1.7950 34 1 5.3238 -7.5796 0.1789 35 1 6.1112 -9.1133 2.0067 36 1 4.4785 -9.0537 2.7132 37 1 4.4704 -12.2686 -0.6754 38 1 2.6029 -12.9583 1.7478 39 1 2.4417 -13.6167 0.0324 40 1 4.7613 -14.6302 0.2035 41 1 4.9233 -13.9719 1.9185 42 1 2.6822 -3.6845 0.7675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879845485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:23 Heat of formation + Delta-G solvation = -87.782815 kcal Electronic energy + Delta-G solvation = -25042.957424 eV Core-core repulsion = 21180.972150 eV Total energy + Delta-G solvation = -3861.985274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76511 -41.35935 -39.22109 -38.43014 -36.99841 -36.28565 -35.78336 -34.80084 -31.72464 -31.36118 -29.38424 -27.23361 -26.46816 -24.12486 -23.38075 -23.00431 -22.65783 -21.70582 -21.42754 -19.62303 -19.34038 -19.06400 -17.84907 -17.72644 -17.36455 -16.91405 -16.55670 -16.37798 -16.03175 -15.76954 -15.51798 -15.08325 -14.85485 -14.66174 -14.25822 -13.95125 -13.89680 -13.50864 -13.48634 -12.99609 -12.90987 -12.83099 -12.75788 -12.49313 -12.17219 -11.99117 -11.84900 -11.73438 -11.58507 -11.54654 -11.47119 -11.23922 -10.97518 -10.77937 -10.18069 -9.36833 -8.70929 -8.56589 -6.34675 0.95155 0.99028 1.05417 1.36877 1.48167 1.48775 1.52507 1.67950 2.18795 2.22320 2.76559 2.79912 3.27781 3.48387 3.68166 3.73308 3.76793 3.89235 3.97708 4.13379 4.26634 4.49709 4.58145 4.66609 4.68270 4.71560 4.88360 4.98718 5.06943 5.12194 5.14671 5.17000 5.21053 5.29423 5.34448 5.39034 5.73084 5.84875 6.07459 6.13438 6.19272 6.38777 6.64007 6.70961 6.96455 7.03122 7.08466 7.58863 8.35058 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026453 B = 0.002174 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.229416 B =12873.654748 C =13732.322633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.088 3.912 10 C -0.199 4.199 11 C -0.090 4.090 12 C -0.251 4.251 13 C 0.177 3.823 14 N -0.670 5.670 15 C 0.696 3.304 16 O -0.617 6.617 17 N -0.726 5.726 18 C 0.143 3.857 19 C 0.063 3.937 20 O -0.354 6.354 21 C 0.491 3.509 22 O -0.539 6.539 23 C -0.187 4.187 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.237 4.237 27 H 0.289 0.711 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -24.284 1.577 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.109 4.109 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.396 3.604 16 O -0.496 6.496 17 N -0.384 5.384 18 C 0.019 3.981 19 C -0.011 4.011 20 O -0.270 6.270 21 C 0.336 3.664 22 O -0.429 6.429 23 C -0.206 4.206 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.259 4.259 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.255 0.745 32 H 0.249 0.751 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.171 0.829 38 H 0.114 0.886 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.772 -23.449 1.666 23.987 hybrid contribution 0.046 0.536 0.535 0.759 sum 4.818 -22.912 2.200 23.516 Atomic orbital electron populations 1.69855 1.08675 1.30564 1.35692 1.26696 0.95623 1.04197 0.91250 0.85280 0.78872 0.75807 0.79862 1.18732 1.18419 1.18764 1.19700 0.97480 0.92703 1.43329 0.91962 1.17836 0.91979 0.92377 0.89246 1.21302 1.00087 0.97622 1.02918 1.20830 0.98901 0.92127 0.99060 1.20442 1.01727 0.98075 1.07024 1.17278 0.95356 0.83364 0.95695 1.42324 1.05901 1.14892 1.68687 1.16134 0.82552 0.82842 0.78826 1.90963 1.55412 1.46062 1.57190 1.44841 1.08900 1.18172 1.66472 1.21314 0.80309 0.94357 1.02135 1.23377 1.02515 0.83280 0.91890 1.86544 1.76640 1.15833 1.47985 1.23188 0.73940 0.83653 0.85614 1.90659 1.43130 1.85355 1.23783 1.21914 1.08964 0.89226 1.00465 1.23187 0.90642 0.99530 1.04163 1.23201 0.99288 0.92005 1.03616 1.20948 1.04636 0.92214 1.08142 0.90020 0.87785 0.85819 0.85004 0.74478 0.75134 0.89023 0.91121 0.88002 0.89340 0.82940 0.88600 0.84755 0.84907 0.88751 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.32 10.94 21.82 0.24 -44.08 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.98 40.55 29.59 68.60 2.03 42.58 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.50 -29.57 9.05 23.46 0.21 -29.35 16 8 H 0.06 3.68 7.90 -2.91 -0.02 3.66 16 9 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 10 C -0.20 -10.86 8.69 22.75 0.20 -10.66 16 11 C -0.09 -4.16 10.02 22.20 0.22 -3.94 16 12 C -0.25 -10.61 9.97 22.58 0.23 -10.38 16 13 C 0.18 8.07 6.25 38.09 0.24 8.30 16 14 N -0.67 -23.32 5.34 -317.33 -1.70 -25.01 16 15 C 0.70 25.11 8.29 179.05 1.48 26.59 16 16 O -0.62 -29.16 14.10 -3.97 -0.06 -29.22 16 17 N -0.73 -17.57 5.51 -478.53 -2.64 -20.20 16 18 C 0.14 3.02 6.07 86.38 0.52 3.54 16 19 C 0.06 1.03 5.60 71.98 0.40 1.43 16 20 O -0.35 -6.34 10.17 -51.47 -0.52 -6.86 16 21 C 0.49 8.83 7.74 71.24 0.55 9.39 16 22 O -0.54 -12.57 16.01 22.00 0.35 -12.22 16 23 C -0.19 -2.14 6.30 -11.54 -0.07 -2.21 16 24 C -0.14 -1.11 10.24 30.62 0.31 -0.79 16 25 C -0.14 -1.28 10.05 30.62 0.31 -0.98 16 26 C -0.24 -13.05 8.39 22.85 0.19 -12.86 16 27 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 28 H 0.10 5.86 6.17 -2.91 -0.02 5.84 16 29 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.42 10.42 8.84 -92.71 -0.82 9.60 16 32 H 0.41 7.23 8.49 -92.71 -0.79 6.44 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.46 8.13 -2.39 -0.02 1.45 16 36 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 37 H 0.15 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.09 1.16 7.67 -2.39 -0.02 1.14 16 42 H 0.08 4.88 6.48 -2.91 -0.02 4.87 16 Total: -1.00 -77.48 365.43 2.29 -75.19 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.54 Total: 34.27 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.12 Total: -14.45 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -4.10 Total: -89.29 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.23 Total: -48.30 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -77.48 2.29 -75.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879845485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.593 kcal (2) G-P(sol) polarization free energy of solvation -77.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds