Wall clock time and date at job start Tue Mar 31 2020 13:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.62105 * 2 1 4 4 C 1.38305 * 119.96300 * 271.08800 * 3 2 1 5 5 C 1.38255 * 120.14266 * 179.77054 * 4 3 2 6 6 C 1.38140 * 120.06961 * 0.50623 * 5 4 3 7 7 C 1.38849 * 119.92717 * 359.75177 * 6 5 4 8 8 N 1.39925 * 120.06893 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00065 * 324.89689 * 8 7 6 10 10 O 1.21284 * 120.00210 * 4.61789 * 9 8 7 11 11 C 1.50707 * 119.99571 * 184.62059 * 9 8 7 12 12 C 1.52999 * 109.46567 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47069 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00366 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47071 * 60.00201 * 17 15 13 19 19 H 1.48507 * 109.47329 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47239 * 300.00190 * 17 15 13 21 21 C 1.38087 * 119.96637 * 91.37066 * 3 2 1 22 22 C 1.54093 * 110.67286 * 237.23603 * 2 1 3 23 23 O 1.45696 * 104.00814 * 241.75336 * 22 2 1 24 24 C 1.33773 * 109.47744 * 359.75274 * 23 22 2 25 25 O 1.21515 * 123.07237 * 179.97438 * 24 23 22 26 26 N 1.33999 * 113.85635 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.47208 * 297.88429 * 1 2 3 28 28 H 1.08999 * 109.46915 * 57.87713 * 1 2 3 29 29 H 1.08998 * 109.47450 * 177.88480 * 1 2 3 30 30 H 1.07999 * 119.92791 * 0.02572 * 4 3 2 31 31 H 1.08001 * 119.96884 * 180.26184 * 5 4 3 32 32 H 1.07998 * 120.03586 * 179.72137 * 6 5 4 33 33 H 0.97007 * 119.99495 * 144.89062 * 8 7 6 34 34 H 1.08995 * 109.47170 * 299.99982 * 11 9 8 35 35 H 1.08999 * 109.47162 * 59.99741 * 11 9 8 36 36 H 1.09003 * 109.47300 * 299.99610 * 12 11 9 37 37 H 1.08999 * 109.47473 * 60.00076 * 12 11 9 38 38 H 0.96996 * 120.00197 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.04063 * 359.97438 * 21 3 2 40 40 H 1.08998 * 110.72550 * 123.02264 * 22 2 1 41 41 H 1.09002 * 110.42797 * 0.34115 * 22 2 1 42 42 H 0.97002 * 125.55839 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4104 0.0000 4 6 2.2827 2.0649 -1.1980 5 6 2.7651 3.3606 -1.2022 6 6 3.0368 4.0019 -0.0093 7 6 2.8200 3.3457 1.1950 8 7 3.0937 3.9927 2.4051 9 6 4.1339 4.8451 2.4933 10 8 4.7816 5.1160 1.5043 11 6 4.4922 5.4617 3.8210 12 6 5.7014 6.3826 3.6457 13 6 6.0602 6.9988 4.9734 14 1 5.4837 6.7573 5.8542 15 6 7.1250 7.8699 5.0639 16 7 7.8273 8.1636 3.9915 17 14 7.5693 8.6341 6.7095 18 1 7.9005 7.5606 7.6805 19 1 8.7430 9.5279 6.5395 20 1 6.4171 9.4219 7.2166 21 6 2.3304 2.0459 1.1959 22 6 2.0740 -0.7802 -1.2123 23 8 2.8245 -1.8782 -0.6173 24 6 2.7619 -1.7902 0.7161 25 8 3.3037 -2.5844 1.4592 26 7 2.0462 -0.7467 1.1574 27 1 -0.3634 0.4806 0.9084 28 1 -0.3633 0.5464 -0.8703 29 1 -0.3634 -1.0269 -0.0379 30 1 2.0749 1.5643 -2.1321 31 1 2.9334 3.8705 -2.1393 32 1 3.4178 5.0125 -0.0133 33 1 2.5346 3.8277 3.1805 34 1 3.6462 6.0391 4.1936 35 1 4.7363 4.6738 4.5335 36 1 6.5473 5.8047 3.2733 37 1 5.4578 7.1706 2.9331 38 1 8.5762 8.7767 4.0552 39 1 2.1608 1.5329 2.1310 40 1 2.7300 -0.1506 -1.8135 41 1 1.2526 -1.1629 -1.8182 42 1 1.8907 -0.5227 2.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882253989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:37 Heat of formation + Delta-G solvation = -84.221828 kcal Electronic energy + Delta-G solvation = -25791.670785 eV Core-core repulsion = 21929.839927 eV Total energy + Delta-G solvation = -3861.830858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24231 -40.38490 -38.76450 -37.44908 -35.99823 -34.58232 -33.57991 -32.15914 -31.22397 -30.51503 -29.26209 -27.39785 -25.84413 -24.03113 -23.28886 -22.29427 -22.06459 -20.70521 -19.76885 -18.62015 -17.80526 -17.22232 -17.08087 -16.41014 -16.13178 -15.89942 -15.56196 -15.13623 -14.68888 -14.62123 -14.50423 -14.42836 -13.89019 -13.82231 -13.64889 -13.42130 -12.96338 -12.76441 -12.50643 -12.25206 -12.14816 -11.76439 -11.52817 -11.25992 -11.05168 -10.96807 -10.91658 -10.68074 -10.32153 -10.06706 -9.88118 -9.77108 -9.34924 -9.17545 -9.01636 -8.39086 -8.20674 -6.02353 -4.07498 1.06029 1.12253 2.34305 2.44198 2.91985 3.08630 3.15059 3.30681 3.35899 3.37355 3.52175 3.64812 3.94205 4.24254 4.42176 4.58014 4.68052 4.74479 4.84273 4.91654 5.04722 5.09809 5.16568 5.26125 5.32816 5.39660 5.47151 5.53940 5.72411 6.04873 6.05463 6.06390 6.24472 6.29600 6.39731 6.43692 6.73962 6.90927 6.91633 7.53146 7.65692 7.74798 7.76688 7.98078 8.27921 8.46932 8.99984 9.56639 11.08511 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002423 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.690907 B =11553.326737 C =12168.285116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.168 3.832 3 C -0.084 4.084 4 C -0.137 4.137 5 C -0.093 4.093 6 C -0.117 4.117 7 C 0.164 3.836 8 N -0.687 5.687 9 C 0.510 3.490 10 O -0.511 6.511 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.135 4.135 22 C 0.046 3.954 23 O -0.326 6.326 24 C 0.649 3.351 25 O -0.523 6.523 26 N -0.724 5.724 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -15.430 -11.364 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.081 3.919 3 C -0.085 4.085 4 C -0.156 4.156 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.069 3.931 8 N -0.333 5.333 9 C 0.300 3.700 10 O -0.384 6.384 11 C -0.169 4.169 12 C 0.000 4.000 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.156 4.156 22 C -0.029 4.029 23 O -0.236 6.236 24 C 0.401 3.599 25 O -0.407 6.407 26 N -0.397 5.397 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.245 0.755 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -18.838 -15.722 -12.002 27.315 hybrid contribution -0.106 0.675 1.748 1.877 sum -18.943 -15.047 -10.254 26.275 Atomic orbital electron populations 1.22143 0.90937 1.03302 1.04323 1.20391 0.95805 0.89753 0.85947 1.19367 1.01494 0.93917 0.93747 1.20830 1.02448 0.95658 0.96684 1.21048 0.97645 0.94411 0.98096 1.21514 0.99583 1.01754 0.90856 1.17826 0.97426 0.91031 0.86818 1.43975 1.32132 1.45644 1.11588 1.21895 0.77837 0.77132 0.93146 1.90673 1.50556 1.58588 1.38589 1.21926 1.03139 1.00650 0.91144 1.18915 0.90442 0.93511 0.97176 1.21147 1.14352 1.26932 0.94435 0.92590 1.25018 0.96213 0.96544 0.96526 1.69976 1.19513 1.35036 1.28212 0.86635 0.77944 0.79204 0.84051 1.20199 1.21230 1.20216 1.20531 1.04484 0.92831 0.97783 1.24674 0.96977 0.86452 0.94792 1.87276 1.69027 1.48314 1.18993 1.18455 0.78382 0.81480 0.81573 1.91097 1.50180 1.44831 1.54626 1.46110 1.55154 1.28629 1.09761 0.90823 0.90017 0.91164 0.85724 0.85302 0.83774 0.75518 0.89750 0.89749 0.95724 0.95714 0.92796 0.86092 0.86773 0.87082 0.72200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.75 37.16 0.32 -0.24 16 2 C 0.17 1.05 1.20 -132.08 -0.16 0.89 16 3 C -0.08 -0.68 4.87 -104.65 -0.51 -1.19 16 4 C -0.14 -1.08 8.74 -39.55 -0.35 -1.42 16 5 C -0.09 -0.94 10.04 -39.61 -0.40 -1.33 16 6 C -0.12 -1.55 8.70 -39.39 -0.34 -1.89 16 7 C 0.16 2.06 6.30 -83.69 -0.53 1.53 16 8 N -0.69 -8.90 5.34 -9.86 -0.05 -8.95 16 9 C 0.51 9.06 7.67 -10.98 -0.08 8.98 16 10 O -0.51 -11.09 13.42 5.55 0.07 -11.01 16 11 C -0.13 -2.43 5.64 -27.88 -0.16 -2.59 16 12 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 13 C -0.53 -14.66 9.11 -34.44 -0.31 -14.98 16 14 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.14 -1.32 9.26 -39.39 -0.36 -1.68 16 22 C 0.05 0.27 7.04 37.73 0.27 0.54 16 23 O -0.33 -3.47 11.09 -37.84 -0.42 -3.89 16 24 C 0.65 7.80 9.16 53.71 0.49 8.29 16 25 O -0.52 -8.50 18.04 -19.12 -0.34 -8.84 16 26 N -0.72 -5.93 5.12 -53.09 -0.27 -6.20 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.12 0.58 6.66 -52.49 -0.35 0.23 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 2.26 6.22 -52.49 -0.33 1.94 16 33 H 0.41 3.82 8.82 -40.82 -0.36 3.46 16 34 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 0.94 6.91 -52.49 -0.36 0.58 16 40 H 0.11 0.58 5.98 -51.93 -0.31 0.27 16 41 H 0.11 0.32 7.73 -51.93 -0.40 -0.09 16 42 H 0.43 2.91 8.04 -40.82 -0.33 2.58 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -37.13 354.74 -7.65 -44.78 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.36 Total: 1.35 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.34 Total: -2.66 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.41 Total: -41.38 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.69 Total: -23.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.13 -7.65 -44.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882253989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.447 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds