Wall clock time and date at job start Tue Mar 31 2020 13:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 110.62105 * 2 1 4 4 C 1.38305 * 119.96300 * 271.08800 * 3 2 1 5 5 C 1.38255 * 120.14266 * 179.77054 * 4 3 2 6 6 C 1.38140 * 120.06961 * 0.50623 * 5 4 3 7 7 C 1.38849 * 119.92717 * 359.75177 * 6 5 4 8 8 N 1.39925 * 120.06893 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00065 * 324.89689 * 8 7 6 10 10 O 1.21284 * 120.00210 * 4.61789 * 9 8 7 11 11 C 1.50707 * 119.99571 * 184.62059 * 9 8 7 12 12 C 1.52999 * 109.46567 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47069 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00366 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47071 * 60.00201 * 17 15 13 19 19 H 1.48507 * 109.47329 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47239 * 300.00190 * 17 15 13 21 21 C 1.38087 * 119.96637 * 91.37066 * 3 2 1 22 22 C 1.54093 * 110.67286 * 237.23603 * 2 1 3 23 23 O 1.45696 * 104.00814 * 241.75336 * 22 2 1 24 24 C 1.33773 * 109.47744 * 359.75274 * 23 22 2 25 25 O 1.21515 * 123.07237 * 179.97438 * 24 23 22 26 26 N 1.33999 * 113.85635 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.47208 * 297.88429 * 1 2 3 28 28 H 1.08999 * 109.46915 * 57.87713 * 1 2 3 29 29 H 1.08998 * 109.47450 * 177.88480 * 1 2 3 30 30 H 1.07999 * 119.92791 * 0.02572 * 4 3 2 31 31 H 1.08001 * 119.96884 * 180.26184 * 5 4 3 32 32 H 1.07998 * 120.03586 * 179.72137 * 6 5 4 33 33 H 0.97007 * 119.99495 * 144.89062 * 8 7 6 34 34 H 1.08995 * 109.47170 * 299.99982 * 11 9 8 35 35 H 1.08999 * 109.47162 * 59.99741 * 11 9 8 36 36 H 1.09003 * 109.47300 * 299.99610 * 12 11 9 37 37 H 1.08999 * 109.47473 * 60.00076 * 12 11 9 38 38 H 0.96996 * 120.00197 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.04063 * 359.97438 * 21 3 2 40 40 H 1.08998 * 110.72550 * 123.02264 * 22 2 1 41 41 H 1.09002 * 110.42797 * 0.34115 * 22 2 1 42 42 H 0.97002 * 125.55839 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4104 0.0000 4 6 2.2827 2.0649 -1.1980 5 6 2.7651 3.3606 -1.2022 6 6 3.0368 4.0019 -0.0093 7 6 2.8200 3.3457 1.1950 8 7 3.0937 3.9927 2.4051 9 6 4.1339 4.8451 2.4933 10 8 4.7816 5.1160 1.5043 11 6 4.4922 5.4617 3.8210 12 6 5.7014 6.3826 3.6457 13 6 6.0602 6.9988 4.9734 14 1 5.4837 6.7573 5.8542 15 6 7.1250 7.8699 5.0639 16 7 7.8273 8.1636 3.9915 17 14 7.5693 8.6341 6.7095 18 1 7.9005 7.5606 7.6805 19 1 8.7430 9.5279 6.5395 20 1 6.4171 9.4219 7.2166 21 6 2.3304 2.0459 1.1959 22 6 2.0740 -0.7802 -1.2123 23 8 2.8245 -1.8782 -0.6173 24 6 2.7619 -1.7902 0.7161 25 8 3.3037 -2.5844 1.4592 26 7 2.0462 -0.7467 1.1574 27 1 -0.3634 0.4806 0.9084 28 1 -0.3633 0.5464 -0.8703 29 1 -0.3634 -1.0269 -0.0379 30 1 2.0749 1.5643 -2.1321 31 1 2.9334 3.8705 -2.1393 32 1 3.4178 5.0125 -0.0133 33 1 2.5346 3.8277 3.1805 34 1 3.6462 6.0391 4.1936 35 1 4.7363 4.6738 4.5335 36 1 6.5473 5.8047 3.2733 37 1 5.4578 7.1706 2.9331 38 1 8.5762 8.7767 4.0552 39 1 2.1608 1.5329 2.1310 40 1 2.7300 -0.1506 -1.8135 41 1 1.2526 -1.1629 -1.8182 42 1 1.8907 -0.5227 2.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882253989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:36 Heat of formation + Delta-G solvation = -112.146811 kcal Electronic energy + Delta-G solvation = -25792.881703 eV Core-core repulsion = 21929.839927 eV Total energy + Delta-G solvation = -3863.041776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.95186 -41.52113 -39.80650 -38.40350 -36.80183 -35.68431 -35.56909 -33.22750 -32.72192 -31.35533 -30.12751 -27.99728 -27.56046 -24.91281 -24.29333 -23.59503 -22.88223 -21.89910 -20.99505 -19.36646 -18.92093 -18.60587 -17.87031 -17.74752 -17.19062 -16.96355 -16.74244 -16.46600 -16.11636 -15.57294 -15.32415 -15.26666 -15.00438 -14.62328 -14.40613 -14.31484 -14.23845 -14.13207 -13.47598 -13.32936 -13.18719 -12.92091 -12.78849 -12.54389 -12.41061 -12.24590 -11.95054 -11.86395 -11.69928 -11.67302 -11.37780 -11.32401 -10.78939 -10.57812 -10.54304 -9.84788 -9.15536 -8.20236 -6.34380 0.22644 0.31417 1.41098 1.45204 1.52904 1.54625 1.58388 1.69129 2.05203 2.42013 2.50412 2.74242 3.09230 3.13100 3.32321 3.81935 3.82465 3.94096 4.08102 4.20187 4.29229 4.40523 4.46412 4.49355 4.49969 4.56314 4.60778 4.79107 4.88965 4.95378 5.02728 5.26263 5.30720 5.34026 5.45521 5.48310 5.54912 5.59175 5.73013 5.82153 6.00693 6.14415 6.17622 6.43115 6.83736 6.96477 7.17134 7.36148 8.92165 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002423 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.690907 B =11553.326737 C =12168.285116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.173 3.827 3 C -0.079 4.079 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.147 4.147 7 C 0.134 3.866 8 N -0.665 5.665 9 C 0.511 3.489 10 O -0.562 6.562 11 C -0.117 4.117 12 C 0.042 3.958 13 C -0.545 4.545 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.131 4.131 22 C 0.038 3.962 23 O -0.344 6.344 24 C 0.645 3.355 25 O -0.578 6.578 26 N -0.712 5.712 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.428 0.572 34 H 0.111 0.889 35 H 0.107 0.893 36 H -0.019 1.019 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 -16.922 -11.107 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.086 3.914 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.167 4.167 7 C 0.039 3.961 8 N -0.312 5.312 9 C 0.301 3.699 10 O -0.440 6.440 11 C -0.157 4.157 12 C 0.005 3.995 13 C -0.583 4.583 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.151 4.151 22 C -0.035 4.035 23 O -0.253 6.253 24 C 0.398 3.602 25 O -0.467 6.467 26 N -0.383 5.383 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.162 0.838 32 H 0.125 0.875 33 H 0.267 0.733 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.000 1.000 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -21.770 -17.223 -11.741 30.140 hybrid contribution 0.696 1.104 1.505 1.993 sum -21.074 -16.119 -10.235 28.438 Atomic orbital electron populations 1.22177 0.88297 1.04360 1.05485 1.20592 0.97477 0.87991 0.85303 1.19660 1.00341 0.94796 0.93298 1.21252 0.99821 0.94417 0.98364 1.21272 0.97502 0.95516 0.97476 1.21428 1.01502 1.00917 0.92898 1.17998 0.99692 0.92377 0.86000 1.43519 1.30703 1.44117 1.12850 1.21587 0.78621 0.77712 0.91950 1.90666 1.52753 1.60707 1.39850 1.21665 1.01024 1.00407 0.92587 1.18687 0.91998 0.93185 0.95669 1.21682 1.14465 1.26627 0.95495 0.90501 1.26123 0.96206 0.97246 1.00807 1.70160 1.20308 1.36093 1.31161 0.85391 0.77832 0.78395 0.78742 1.18808 1.21403 1.18562 1.20732 1.03320 0.91539 0.99528 1.25157 0.98081 0.85638 0.94645 1.87242 1.69778 1.50020 1.18287 1.18611 0.78154 0.81595 0.81808 1.91047 1.52503 1.46976 1.56138 1.46117 1.53875 1.27555 1.10789 0.90623 0.87923 0.90246 0.81521 0.83781 0.87507 0.73319 0.87052 0.87464 1.00038 0.99638 0.92836 0.84150 0.85709 0.83130 0.71457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.75 71.98 0.63 0.22 16 2 C 0.17 1.47 1.20 3.11 0.00 1.48 16 3 C -0.08 -1.02 4.87 -19.89 -0.10 -1.12 16 4 C -0.12 -1.46 8.74 22.29 0.19 -1.26 16 5 C -0.10 -1.87 10.04 22.25 0.22 -1.65 16 6 C -0.15 -4.03 8.70 22.39 0.19 -3.83 16 7 C 0.13 3.31 6.30 38.15 0.24 3.55 16 8 N -0.67 -17.11 5.34 -303.50 -1.62 -18.73 16 9 C 0.51 18.88 7.67 87.66 0.67 19.55 16 10 O -0.56 -26.33 13.42 -3.04 -0.04 -26.37 16 11 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 12 C 0.04 2.30 4.26 29.85 0.13 2.43 16 13 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 14 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 15 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 16 N -0.94 -59.18 13.29 21.44 0.28 -58.89 16 17 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 C -0.13 -2.26 9.26 22.39 0.21 -2.05 16 22 C 0.04 0.29 7.04 72.35 0.51 0.80 16 23 O -0.34 -6.55 11.09 -47.34 -0.52 -7.07 16 24 C 0.65 14.68 9.16 129.91 1.19 15.87 16 25 O -0.58 -18.90 18.04 19.64 0.35 -18.54 16 26 N -0.71 -9.88 5.12 -553.61 -2.84 -12.72 16 27 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.10 -0.07 8.14 -2.39 -0.02 -0.08 16 29 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.17 0.62 6.66 -2.91 -0.02 0.60 16 31 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.11 3.71 6.22 -2.91 -0.02 3.70 16 33 H 0.43 7.34 8.82 -92.70 -0.82 6.53 16 34 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 36 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 37 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.14 1.80 6.91 -2.91 -0.02 1.78 16 40 H 0.13 0.68 5.98 -2.39 -0.01 0.67 16 41 H 0.15 0.00 7.73 -2.39 -0.02 -0.02 16 42 H 0.44 4.88 8.04 -92.71 -0.75 4.13 16 Total: -1.00 -88.67 354.74 2.12 -86.55 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -0.48 Total: 10.33 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.96 Total: -0.53 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -4.17 Total: -90.34 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.21 Total: -51.99 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -88.67 2.12 -86.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882253989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.595 kcal (2) G-P(sol) polarization free energy of solvation -88.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds