Wall clock time and date at job start Tue Mar 31 2020 13:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.40075 * 120.32586 * 2 1 4 4 C 1.38334 * 120.58109 * 48.58261 * 3 2 1 5 5 C 1.39084 * 119.79677 * 180.32862 * 4 3 2 6 6 N 1.39427 * 120.00738 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00343 * 213.11117 * 6 5 4 8 8 O 1.21791 * 119.99440 * 5.13229 * 7 6 5 9 9 C 1.41686 * 120.00200 * 185.12724 * 7 6 5 10 10 H 1.08002 * 119.99672 * 0.02562 * 9 7 6 11 11 C 1.40135 * 119.99789 * 179.97438 * 9 7 6 12 12 N 1.30626 * 120.00428 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99812 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47019 * 90.00466 * 13 11 9 15 15 H 1.48503 * 109.47237 * 210.00558 * 13 11 9 16 16 H 1.48501 * 109.47083 * 330.00366 * 13 11 9 17 17 C 1.39213 * 119.98958 * 0.04019 * 5 4 3 18 18 C 1.38057 * 120.18310 * 359.90568 * 17 5 4 19 19 C 1.38649 * 120.02927 * 0.23584 * 18 17 5 20 20 O 1.35914 * 120.41431 * 180.73506 * 19 18 17 21 21 C 1.42528 * 117.44646 * 104.22120 * 20 19 18 22 22 C 1.52715 * 110.45878 * 43.71388 * 21 20 19 23 23 C 1.53004 * 109.36967 * 283.75494 * 22 21 20 24 24 C 1.52999 * 109.36803 * 164.13172 * 22 21 20 25 25 C 1.35176 * 120.31857 * 180.02562 * 2 1 3 26 26 O 1.21292 * 120.16109 * 3.58065 * 25 2 1 27 27 H 1.09010 * 109.46910 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47547 * 120.00007 * 1 2 3 29 29 H 1.08997 * 109.47440 * 240.00378 * 1 2 3 30 30 H 1.08006 * 120.10111 * 0.30834 * 4 3 2 31 31 H 0.97009 * 119.99976 * 33.11111 * 6 5 4 32 32 H 0.96996 * 120.00748 * 179.97438 * 12 11 9 33 33 H 1.08007 * 119.90880 * 179.87591 * 17 5 4 34 34 H 1.07997 * 119.98868 * 179.97438 * 18 17 5 35 35 H 1.08997 * 109.30315 * 283.41156 * 21 20 19 36 36 H 1.08996 * 109.29886 * 164.01958 * 21 20 19 37 37 H 1.09001 * 109.47050 * 162.92547 * 23 22 21 38 38 H 1.09000 * 109.46926 * 282.92679 * 23 22 21 39 39 H 1.09002 * 109.46985 * 42.92483 * 23 22 21 40 40 H 1.09000 * 109.47012 * 299.37155 * 24 22 21 41 41 H 1.08998 * 109.47224 * 59.37136 * 24 22 21 42 42 H 1.09003 * 109.47471 * 179.37001 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1722 1.2091 0.0000 4 6 1.8475 2.2144 0.8931 5 6 2.5561 3.4110 0.8742 6 7 2.2329 4.4270 1.7728 7 6 2.3672 5.7174 1.4078 8 8 2.6808 5.9974 0.2647 9 6 2.1435 6.7482 2.3538 10 1 1.8657 6.4998 3.3675 11 6 2.2836 8.0899 1.9743 12 7 2.6201 8.3903 0.7484 13 14 1.9893 9.4490 3.2217 14 1 3.2634 9.7701 3.9136 15 1 1.4855 10.6598 2.5250 16 1 0.9851 8.9974 4.2181 17 6 3.5879 3.5944 -0.0421 18 6 3.9122 2.5903 -0.9324 19 6 3.2066 1.3968 -0.9193 20 8 3.5289 0.3974 -1.7822 21 6 4.2451 -0.7178 -1.2579 22 6 3.6519 -1.1515 0.0809 23 6 4.0911 -0.1724 1.1715 24 6 4.1556 -2.5537 0.4286 25 6 2.1473 -1.1669 -0.0005 26 8 1.5515 -2.2213 -0.0665 27 1 -0.3633 1.0278 -0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 -0.3634 -0.5138 0.8900 30 1 1.0460 2.0705 1.6026 31 1 1.9113 4.2051 2.6607 32 1 2.7167 9.3190 0.4856 33 1 4.1360 4.5250 -0.0570 34 1 4.7129 2.7360 -1.6422 35 1 5.2898 -0.4409 -1.1164 36 1 4.1874 -1.5468 -1.9631 37 1 3.4476 -0.2876 2.0438 38 1 5.1238 -0.3801 1.4518 39 1 4.0148 0.8480 0.7959 40 1 3.8397 -3.2551 -0.3435 41 1 5.2439 -2.5445 0.4879 42 1 3.7421 -2.8605 1.3894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886556269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:40 Heat of formation + Delta-G solvation = -83.860557 kcal Electronic energy + Delta-G solvation = -27516.719004 eV Core-core repulsion = 23654.903812 eV Total energy + Delta-G solvation = -3861.815192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.91631 -40.64884 -39.65194 -38.43612 -36.71847 -35.90795 -34.96409 -34.36955 -31.23249 -30.55195 -28.88919 -28.29011 -27.92842 -26.85824 -24.69993 -23.56914 -23.15885 -21.86576 -20.51896 -19.54477 -18.74452 -17.91573 -17.86708 -17.55262 -17.30274 -16.71281 -16.51685 -15.99557 -15.81644 -15.68596 -15.31973 -14.91117 -14.77074 -14.54591 -14.12394 -13.88505 -13.81327 -13.70768 -13.54458 -13.29223 -13.17767 -13.14535 -12.98008 -12.80628 -12.69486 -12.61163 -12.04830 -12.00699 -11.92801 -11.50378 -11.00675 -10.87278 -10.75208 -10.52102 -9.86490 -9.40359 -8.58091 -8.37940 -7.00811 0.09072 0.25737 1.33923 1.41751 1.42440 1.58131 1.69600 2.21774 2.26239 2.49821 2.79984 2.93515 3.18074 3.55229 3.64674 3.66257 3.83712 3.96616 4.24032 4.27397 4.32892 4.37995 4.45235 4.48495 4.53995 4.66202 4.67936 4.71334 4.74610 4.83030 4.89052 4.92667 5.15131 5.16982 5.23455 5.27337 5.39549 5.43757 5.57551 5.89716 6.06446 6.16554 6.28738 6.52165 6.75523 6.83874 7.37816 8.38374 8.56974 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.003260 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.442451 B = 8587.679789 C = 8886.346421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.561 5.561 3 C 0.145 3.855 4 C -0.165 4.165 5 C 0.192 3.808 6 N -0.691 5.691 7 C 0.531 3.469 8 O -0.609 6.609 9 C -0.563 4.563 10 H 0.091 0.909 11 C 0.034 3.966 12 N -0.798 5.798 13 Si 0.997 3.003 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.248 1.248 17 C -0.139 4.139 18 C -0.086 4.086 19 C 0.043 3.957 20 O -0.337 6.337 21 C 0.071 3.929 22 C -0.117 4.117 23 C -0.164 4.164 24 C -0.120 4.120 25 C 0.527 3.473 26 O -0.554 6.554 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.279 0.721 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 -15.759 2.531 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.287 5.287 3 C 0.052 3.948 4 C -0.188 4.188 5 C 0.092 3.908 6 N -0.335 5.335 7 C 0.341 3.659 8 O -0.496 6.496 9 C -0.597 4.597 10 H 0.110 0.890 11 C -0.184 4.184 12 N -0.426 5.426 13 Si 0.817 3.183 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.171 1.171 17 C -0.160 4.160 18 C -0.106 4.106 19 C -0.004 4.004 20 O -0.254 6.254 21 C -0.003 4.003 22 C -0.120 4.120 23 C -0.221 4.221 24 C -0.178 4.178 25 C 0.317 3.683 26 O -0.432 6.432 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.244 0.756 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.165 0.835 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.538 -15.972 1.426 16.235 hybrid contribution -0.485 0.768 0.837 1.235 sum 2.054 -15.204 2.262 15.508 Atomic orbital electron populations 1.21905 0.76861 1.04051 1.03018 1.45520 1.07752 1.03949 1.71483 1.17638 0.95116 0.86838 0.95238 1.20578 1.02987 0.93469 1.01762 1.17887 0.92165 0.88368 0.92358 1.43767 1.68627 1.04973 1.16104 1.17345 0.78598 0.81363 0.88624 1.90640 1.54153 1.82371 1.22439 1.20565 1.49282 0.91313 0.98574 0.89042 1.26954 0.91426 1.02525 0.97528 1.70140 1.32093 1.20554 1.19810 0.85008 0.79783 0.75794 0.77737 1.18541 1.19875 1.17150 1.21130 0.97770 0.99250 0.97893 1.21031 0.99376 0.91861 0.98328 1.18413 0.98105 0.90020 0.93830 1.85991 1.75313 1.29247 1.34811 1.23181 0.96197 0.87785 0.93185 1.21535 0.90102 1.01188 0.99218 1.22436 1.03301 0.99350 0.97022 1.21640 1.02430 0.91350 1.02335 1.21087 0.90825 0.82241 0.74104 1.90651 1.71643 1.30820 1.50061 0.89055 0.91573 0.90613 0.83503 0.75630 0.91070 0.86922 0.83466 0.88778 0.86458 0.92442 0.88962 0.91153 0.91774 0.88638 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 9.90 127.77 1.27 3.24 16 2 N -0.56 -15.79 2.98 -653.62 -1.95 -17.74 16 3 C 0.15 4.35 3.34 38.19 0.13 4.47 16 4 C -0.16 -5.11 8.88 22.50 0.20 -4.91 16 5 C 0.19 7.32 6.28 38.37 0.24 7.56 16 6 N -0.69 -28.79 5.31 -311.38 -1.65 -30.45 16 7 C 0.53 28.33 7.30 85.09 0.62 28.95 16 8 O -0.61 -37.45 12.52 -4.64 -0.06 -37.51 16 9 C -0.56 -29.20 9.31 23.58 0.22 -28.98 16 10 H 0.09 4.19 7.85 -2.91 -0.02 4.16 16 11 C 0.03 1.77 5.50 85.33 0.47 2.24 16 12 N -0.80 -45.37 11.73 21.85 0.26 -45.11 16 13 Si 1.00 37.64 29.56 68.60 2.03 39.67 16 14 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 15 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 16 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 17 C -0.14 -5.53 8.65 22.46 0.19 -5.33 16 18 C -0.09 -2.84 9.55 22.33 0.21 -2.63 16 19 C 0.04 1.31 4.08 22.71 0.09 1.40 16 20 O -0.34 -9.60 9.89 -92.58 -0.92 -10.52 16 21 C 0.07 1.47 5.86 71.89 0.42 1.89 16 22 C -0.12 -2.57 0.73 -53.03 -0.04 -2.61 16 23 C -0.16 -3.53 7.49 71.98 0.54 -2.99 16 24 C -0.12 -2.06 7.71 71.98 0.55 -1.50 16 25 C 0.53 14.98 6.15 87.59 0.54 15.52 16 26 O -0.55 -18.18 16.04 -3.07 -0.05 -18.23 16 27 H 0.09 2.01 7.47 -2.38 -0.02 1.99 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.15 3.90 7.94 -2.91 -0.02 3.87 16 31 H 0.41 14.10 8.77 -92.70 -0.81 13.28 16 32 H 0.28 14.34 8.29 -92.71 -0.77 13.57 16 33 H 0.11 5.35 6.37 -2.91 -0.02 5.33 16 34 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 36 H 0.12 2.06 8.03 -2.39 -0.02 2.04 16 37 H 0.06 1.28 8.01 -2.39 -0.02 1.26 16 38 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 39 H 0.07 1.80 3.55 -2.39 -0.01 1.79 16 40 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.26 340.97 3.57 -68.69 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.25 Total: 34.87 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.66 Total: 16.33 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -3.35 Total: -93.30 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -1.02 Total: -66.26 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -72.26 3.57 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886556269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.167 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds