Wall clock time and date at job start Tue Mar 31 2020 13:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38118 * 126.29808 * 2 1 4 4 C 1.47286 * 126.42681 * 0.02562 * 3 2 1 5 5 O 1.21530 * 119.99838 * 0.02562 * 4 3 2 6 6 O 1.34755 * 120.00361 * 179.72893 * 4 3 2 7 7 C 1.45201 * 117.00340 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47141 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47226 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47272 * 180.02562 * 9 8 7 11 11 C 1.34515 * 125.79292 * 89.71314 * 10 9 8 12 12 C 1.41376 * 106.84517 * 179.88886 * 11 10 9 13 13 C 1.34523 * 106.83822 * 0.37293 * 12 11 10 14 14 O 1.34297 * 108.42145 * 359.77345 * 13 12 11 15 15 C 1.41346 * 107.14834 * 180.28211 * 3 2 1 16 16 N 1.30428 * 108.00818 * 359.55458 * 15 3 2 17 17 N 1.34224 * 126.29320 * 180.02562 * 2 1 3 18 18 C 1.46500 * 125.74371 * 359.97438 * 17 2 1 19 19 C 1.50709 * 109.47141 * 89.99982 * 18 17 2 20 20 H 1.07996 * 119.99989 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99995 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00160 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00193 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47251 * 90.00164 * 23 21 19 25 25 H 1.48495 * 109.47386 * 210.00195 * 23 21 19 26 26 H 1.48509 * 109.47171 * 329.99895 * 23 21 19 27 27 H 1.08995 * 109.46837 * 89.97552 * 1 2 3 28 28 H 1.09000 * 109.47139 * 209.97876 * 1 2 3 29 29 H 1.08995 * 109.47016 * 329.97490 * 1 2 3 30 30 H 1.08996 * 109.47081 * 299.99559 * 7 6 4 31 31 H 1.08997 * 109.46773 * 59.99751 * 7 6 4 32 32 H 1.09001 * 109.47443 * 300.00074 * 8 7 6 33 33 H 1.09001 * 109.46982 * 59.99892 * 8 7 6 34 34 H 1.09009 * 109.46794 * 300.00066 * 9 8 7 35 35 H 1.09001 * 109.47255 * 60.00026 * 9 8 7 36 36 H 1.07999 * 126.57587 * 0.02656 * 11 10 9 37 37 H 1.08001 * 126.58738 * 180.16183 * 12 11 10 38 38 H 1.08000 * 125.78963 * 179.74621 * 13 12 11 39 39 H 1.07993 * 125.99458 * 179.71193 * 15 3 2 40 40 H 1.09000 * 109.47311 * 209.99337 * 18 17 2 41 41 H 1.08990 * 109.47330 * 329.99888 * 18 17 2 42 42 H 0.96998 * 120.00006 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7019 2.7872 0.0015 6 8 2.8015 3.5096 0.0060 7 6 2.2984 4.8716 0.0067 8 6 3.4747 5.8499 0.0138 9 6 2.9445 7.2850 0.0153 10 6 4.1032 8.2486 0.0216 11 6 4.7154 8.7499 -1.0662 12 6 5.7387 9.6076 -0.6015 13 6 5.6960 9.5727 0.7426 14 8 4.7035 8.7479 1.1144 15 6 3.6599 0.6495 -0.0067 16 7 3.6340 -0.6545 -0.0007 17 7 2.3015 -1.0818 -0.0005 18 6 1.8497 -2.4754 -0.0006 19 6 1.6943 -2.9530 -1.4215 20 1 1.9100 -2.2852 -2.2423 21 6 1.2767 -4.2426 -1.6735 22 7 1.1405 -4.6593 -2.9135 23 14 0.9042 -5.3980 -0.2538 24 1 -0.5266 -5.2732 0.1238 25 1 1.1870 -6.7963 -0.6662 26 1 1.7561 -5.0433 0.9098 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 1.6940 5.0361 -0.8852 31 1 1.6870 5.0325 0.8947 32 1 4.0789 5.6852 0.9060 33 1 4.0864 5.6890 -0.8739 34 1 2.3401 7.4500 -0.8768 35 1 2.3331 7.4456 0.9032 36 1 4.4706 8.5395 -2.0968 37 1 6.4255 10.1785 -1.2089 38 1 6.3494 10.1155 1.4096 39 1 4.5461 1.2667 -0.0128 40 1 2.5845 -3.0957 0.5128 41 1 0.8914 -2.5467 0.5136 42 1 0.8471 -5.5666 -3.0908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893252823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:21 Heat of formation + Delta-G solvation = -10.589529 kcal Electronic energy + Delta-G solvation = -24873.445800 eV Core-core repulsion = 21014.807878 eV Total energy + Delta-G solvation = -3858.637922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85767 -40.97576 -39.65585 -36.51712 -34.87559 -33.94951 -33.17132 -32.25454 -31.44068 -30.10465 -28.16072 -27.01619 -26.08929 -23.42403 -22.53712 -22.06250 -21.90801 -20.71596 -20.25347 -18.94500 -17.75056 -17.31793 -17.24756 -16.55300 -16.38439 -16.21675 -15.24277 -15.13034 -14.80635 -14.55639 -14.15183 -13.75860 -13.36385 -13.13756 -13.12081 -13.01543 -12.81809 -12.71956 -12.59464 -12.36353 -12.28214 -12.13317 -11.71666 -11.54410 -11.33742 -11.25479 -10.87266 -10.48641 -10.44549 -10.35525 -10.22429 -9.90649 -9.81004 -8.88004 -8.77175 -8.72951 -8.14218 -6.35832 -4.41088 1.40307 1.84657 2.29541 2.59493 2.63815 2.82497 3.07993 3.15497 3.16706 3.30806 3.61514 4.12943 4.27293 4.54361 4.70069 4.75437 4.79110 4.88762 4.91282 5.05550 5.08477 5.11793 5.24006 5.27797 5.42420 5.50928 5.57189 5.57748 5.75515 5.78196 5.82051 5.90698 5.96383 6.18375 6.19580 6.30225 6.40688 6.51640 6.69419 6.82798 6.98378 7.14042 7.45686 8.11294 8.15870 8.25467 8.67033 9.17582 10.76262 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001948 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.130114 B =14367.946317 C =14572.287544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.175 3.825 3 C -0.316 4.316 4 C 0.552 3.448 5 O -0.529 6.529 6 O -0.355 6.355 7 C 0.070 3.930 8 C -0.117 4.117 9 C -0.037 4.037 10 C -0.008 4.008 11 C -0.210 4.210 12 C -0.214 4.214 13 C -0.045 4.045 14 O -0.176 6.176 15 C 0.084 3.916 16 N -0.294 5.294 17 N -0.310 5.310 18 C 0.224 3.776 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.882 5.882 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 24.622 7.531 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.038 3.962 3 C -0.329 4.329 4 C 0.400 3.600 5 O -0.420 6.420 6 O -0.272 6.272 7 C -0.004 4.004 8 C -0.155 4.155 9 C -0.074 4.074 10 C -0.058 4.058 11 C -0.229 4.229 12 C -0.233 4.233 13 C -0.112 4.112 14 O -0.072 6.072 15 C -0.103 4.103 16 N -0.113 5.113 17 N -0.086 5.086 18 C 0.105 3.895 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.518 5.518 23 Si 0.698 3.302 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.218 0.782 39 H 0.204 0.796 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.509 23.216 7.708 24.874 hybrid contribution -0.450 0.241 0.225 0.557 sum 4.059 23.457 7.933 25.093 Atomic orbital electron populations 1.20646 0.86449 1.03910 1.04496 1.21447 0.94976 0.86340 0.93450 1.18817 0.93747 0.89369 1.30997 1.19995 0.83363 0.84906 0.71773 1.90762 1.17957 1.84557 1.48720 1.86519 1.39966 1.15659 1.85101 1.22883 0.96320 0.78477 1.02737 1.21549 0.97897 0.91333 1.04685 1.20000 0.92302 0.90341 1.04790 1.22331 0.98763 1.00499 0.84168 1.21640 0.99302 1.02286 0.99637 1.21858 1.02419 1.04178 0.94827 1.24038 0.93450 0.97474 0.96253 1.84024 1.39093 1.49034 1.35062 1.23951 0.96734 0.92016 0.97635 1.77224 0.97692 1.12486 1.23904 1.48951 1.02905 1.07531 1.49217 1.20204 0.95836 0.73068 1.00363 1.21075 1.48227 0.99270 0.89914 0.89971 1.24788 0.94257 0.97391 0.95899 1.69861 1.44986 1.18263 1.18668 0.86904 0.79505 0.81089 0.82673 1.19493 1.20316 1.18757 0.89136 0.90708 0.88703 0.91102 0.91200 0.90270 0.90075 0.88325 0.89545 0.83379 0.83483 0.78158 0.79594 0.92501 0.93302 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.57 36.01 0.34 -1.29 16 2 C 0.18 3.44 7.01 -81.59 -0.57 2.87 16 3 C -0.32 -5.81 6.13 -105.08 -0.64 -6.45 16 4 C 0.55 9.27 7.95 34.41 0.27 9.55 16 5 O -0.53 -9.48 14.63 -19.29 -0.28 -9.76 16 6 O -0.36 -5.00 10.07 -40.64 -0.41 -5.41 16 7 C 0.07 0.73 5.48 37.16 0.20 0.94 16 8 C -0.12 -0.96 5.58 -26.73 -0.15 -1.11 16 9 C -0.04 -0.25 5.75 -27.89 -0.16 -0.42 16 10 C -0.01 -0.07 6.58 -35.63 -0.23 -0.30 16 11 C -0.21 -1.76 10.81 -39.71 -0.43 -2.18 16 12 C -0.21 -1.64 10.91 -39.70 -0.43 -2.07 16 13 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 14 O -0.18 -1.66 10.65 5.71 0.06 -1.60 16 15 C 0.08 1.51 11.87 -16.97 -0.20 1.31 16 16 N -0.29 -6.25 12.50 30.87 0.39 -5.86 16 17 N -0.31 -6.77 3.56 -57.76 -0.21 -6.98 16 18 C 0.22 5.12 5.03 -5.19 -0.03 5.09 16 19 C -0.55 -14.77 9.94 -34.44 -0.34 -15.11 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 22 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 23 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.07 1.17 7.05 -51.93 -0.37 0.80 16 29 H 0.09 1.49 6.50 -51.93 -0.34 1.15 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.20 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 40 H 0.06 1.30 7.20 -51.93 -0.37 0.93 16 41 H 0.05 1.02 6.44 -51.93 -0.33 0.68 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -32.46 366.51 -6.59 -39.04 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.65 Total: 2.04 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.11 Total: -7.04 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.95 Total: -37.60 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.63 Total: -16.77 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.46 -6.59 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.453 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds